Standard name | |
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Human Ortholog | |
Description | Endoplasmic reticulum membrane protein; required for mannosylation of inositolphosphorylceramide and for growth at high calcium concentrations; protein abundance increases in response to DNA replication stress |
ensLOC | DeepLoc | |||||||||||||||||||||||
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Localization | WT1 | WT2 | WT3 | RAP60 | RAP140 | RAP220 | RAP300 | RAP380 | RAP460 | RAP540 | RAP620 | RAP700 | HU80 | HU120 | HU160 | rpd3Δ_1 | rpd3Δ_2 | rpd3Δ_3 | WT1 | WT2 | WT3 | AF100 | AF140 | AF180 |
Cortical Patches | 1 | 3 | 1 | 1 | 1 | 0 | 1 | 2 | 1 | 1 | 0 | 2 | 8 | 12 | 20 | 4 | 0 | 3 | 4 | 0 | 1 | 1 | 1 | 1 |
Bud | 0 | 0 | 1 | 0 | 0 | 1 | 2 | 5 | 4 | 7 | 1 | 7 | 1 | 4 | 4 | 0 | 0 | 0 | 4 | 9 | 2 | 4 | 5 | 6 |
Bud Neck | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 1 | 0 | 0 | 0 | 0 |
Bud Site | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | – | – | – | – | – | – |
Cell Periphery | 3 | 0 | 1 | 0 | 0 | 1 | 0 | 0 | 0 | 1 | 1 | 3 | 5 | 1 | 7 | 3 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Cytoplasm | 155 | 447 | 78 | 143 | 178 | 247 | 321 | 452 | 346 | 429 | 377 | 430 | 155 | 205 | 280 | 82 | 52 | 51 | 10 | 28 | 7 | 8 | 7 | 5 |
Endoplasmic Reticulum | 24 | 142 | 13 | 9 | 8 | 15 | 15 | 12 | 10 | 14 | 13 | 11 | 263 | 307 | 233 | 16 | 9 | 11 | 101 | 281 | 65 | 122 | 121 | 135 |
Endosome | 2 | 5 | 10 | 1 | 5 | 7 | 5 | 5 | 9 | 1 | 1 | 7 | 13 | 33 | 39 | 6 | 6 | 9 | 12 | 27 | 15 | 11 | 19 | 20 |
Golgi | 10 | 29 | 13 | 3 | 1 | 0 | 2 | 7 | 1 | 5 | 3 | 0 | 16 | 6 | 6 | 21 | 15 | 11 | 6 | 8 | 9 | 11 | 14 | 14 |
Mitochondria | 3 | 0 | 3 | 0 | 4 | 7 | 13 | 13 | 7 | 8 | 9 | 17 | 0 | 0 | 0 | 6 | 3 | 3 | 5 | 2 | 2 | 2 | 1 | 2 |
Nucleus | 8 | 3 | 14 | 4 | 8 | 32 | 42 | 35 | 21 | 20 | 10 | 9 | 1 | 3 | 0 | 117 | 56 | 50 | 3 | 1 | 2 | 4 | 1 | 1 |
Nuclear Periphery | 1 | 0 | 1 | 0 | 0 | 1 | 0 | 0 | 0 | 1 | 0 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 15 | 10 | 5 | 7 | 7 | 5 |
Nucleolus | 37 | 2 | 0 | 0 | 2 | 4 | 1 | 4 | 1 | 1 | 1 | 2 | 0 | 0 | 0 | 1 | 0 | 6 | 1 | 0 | 0 | 0 | 1 | 0 |
Peroxisomes | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
SpindlePole | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 1 | 0 | 1 | 0 | 1 | 0 | 0 |
Vac/Vac Membrane | 198 | 536 | 253 | 137 | 266 | 452 | 403 | 608 | 309 | 334 | 249 | 263 | 117 | 116 | 84 | 370 | 242 | 236 | 342 | 757 | 248 | 374 | 330 | 339 |
Unique Cell Count | 388 | 1011 | 345 | 241 | 404 | 651 | 675 | 966 | 597 | 689 | 542 | 625 | 496 | 614 | 587 | 521 | 339 | 327 | 514 | 1139 | 367 | 554 | 518 | 540 |
Labelled Cell Count | 442 | 1167 | 388 | 298 | 473 | 767 | 805 | 1144 | 709 | 822 | 665 | 752 | 580 | 687 | 673 | 626 | 384 | 381 | 514 | 1139 | 367 | 554 | 518 | 540 |
Screen | WT1 | WT2 | WT3 | RAP60 | RAP140 | RAP220 | RAP300 | RAP380 | RAP460 | RAP540 | RAP620 | RAP700 | HU80 | HU120 | HU160 | rpd3Δ_1 | rpd3Δ_2 | rpd3Δ_3 | AF100 | AF140 | AF180 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Mean Cell GFP Intensity (1e-4) | 19.7 | 18.4 | 13.3 | 13.9 | 14.0 | 12.7 | 11.3 | 12.2 | 12.3 | 12.0 | 11.3 | 11.7 | 16.1 | 13.9 | 12.2 | 17.5 | 15.8 | 14.1 | 20.0 | 19.6 | 20.8 |
Std Deviation (1e-4) | 6.4 | 3.7 | 4.0 | 3.3 | 3.8 | 3.9 | 4.2 | 3.9 | 4.2 | 3.8 | 3.7 | 4.1 | 3.2 | 2.7 | 2.4 | 5.8 | 5.6 | 5.4 | 4.7 | 5.0 | 4.7 |
Intensity Change (Log2) | – | – | – | 0.07 | 0.08 | -0.06 | -0.23 | -0.12 | -0.11 | -0.15 | -0.23 | -0.18 | 0.28 | 0.07 | -0.12 | 0.4 | 0.26 | 0.09 | 0.59 | 0.56 | 0.65 |
Localization | RAP60 | RAP140 | RAP220 | RAP300 | RAP380 | RAP460 | RAP540 | RAP620 | RAP700 | HU80 | HU120 | HU160 | rpd3Δ_1 | rpd3Δ_2 | rpd3Δ_3 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Cortical Patches | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 3.1 | 0 | 0 | 0 |
Bud | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Bud Neck | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Bud Site | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Cell Periphery | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Cytoplasm | 9.0 | 6.2 | 4.9 | 7.7 | 7.9 | 10.5 | 12.0 | 13.6 | 13.8 | 2.8 | 3.5 | 7.6 | -2.6 | -2.4 | -2.3 |
Endoplasmic Reticulum | 0 | -1.5 | -1.3 | -1.4 | -2.9 | -2.0 | -1.7 | -1.2 | -1.9 | 15.0 | 14.6 | 12.0 | -0.6 | -0.8 | -0.3 |
Endosome | 0 | -1.6 | -2.1 | -2.7 | 0 | -1.5 | 0 | 0 | -2.0 | -0.2 | 1.8 | 2.5 | -1.9 | -1.0 | -0.1 |
Golgi | -1.8 | -3.5 | 0 | -4.4 | -4.0 | -4.4 | -3.5 | -3.5 | 0 | -0.4 | -3.0 | -2.9 | 0.2 | 0.4 | -0.3 |
Mitochondria | 0 | 0 | 0 | 1.3 | 0 | 0 | 0 | 0 | 1.9 | 0 | 0 | 0 | 0 | 0 | 0 |
Nucleus | -1.7 | -1.7 | 0.6 | 1.4 | -0.4 | -0.4 | -1.0 | -2.0 | -2.6 | -4.2 | -4.0 | -4.9 | 7.4 | 5.4 | 5.0 |
Nuclear Periphery | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Nucleolus | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Peroxisomes | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
SpindlePole | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Vacuole | -4.2 | -2.2 | -1.3 | -4.3 | -3.5 | -6.5 | -7.6 | -8.0 | -9.3 | -14.3 | -16.6 | -18.1 | -0.7 | -0.6 | -0.3 |
R1 | R2 | R3 | ||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
G1 Pre-START | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | G1 Pre-START | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | G1 Pre-START | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | |
Concentration | 8.2969 | 11.3953 | 9.7719 | 10.2031 | 8.454 | 10.3499 | 13.6974 | 17.7025 | 15.0178 | 13.9321 | 13.9888 | 15.3495 | 13.3784 | 16.2725 | 14.7703 | 14.2465 | 14.9613 | 15.5727 |
Actin | 0.001 | 0.0001 | 0.0015 | 0.0001 | 0.0005 | 0.0006 | 0.0004 | 0 | 0.0003 | 0.0001 | 0.0001 | 0.0001 | 0.0092 | 0.0002 | 0.0002 | 0 | 0.0011 | 0.0001 |
Bud | 0.0012 | 0.0027 | 0.0044 | 0.0004 | 0.0007 | 0.001 | 0.0001 | 0.0002 | 0.0005 | 0.0004 | 0.0004 | 0.0004 | 0.0004 | 0.0004 | 0.0004 | 0.0004 | 0.0003 | 0.0004 |
Bud Neck | 0.0012 | 0.0015 | 0.0015 | 0.0014 | 0.0016 | 0.0021 | 0.0004 | 0.0016 | 0.0028 | 0.0012 | 0.0029 | 0.0013 | 0.0007 | 0.0027 | 0.001 | 0.0011 | 0.0025 | 0.0018 |
Bud Periphery | 0.0013 | 0.0013 | 0.0023 | 0.0016 | 0.0015 | 0.0033 | 0.0009 | 0.0009 | 0.0023 | 0.0022 | 0.003 | 0.002 | 0.001 | 0.0011 | 0.001 | 0.0013 | 0.0014 | 0.0016 |
Bud Site | 0.0045 | 0.0049 | 0.0059 | 0.0012 | 0.0032 | 0.0019 | 0.0004 | 0.0004 | 0.0018 | 0.0009 | 0.0005 | 0.001 | 0.0006 | 0.0013 | 0.0008 | 0.0013 | 0.0006 | 0.0004 |
Cell Periphery | 0.009 | 0.0117 | 0.0099 | 0.0176 | 0.0045 | 0.008 | 0.0256 | 0.0314 | 0.0212 | 0.0267 | 0.0357 | 0.0158 | 0.0065 | 0.0222 | 0.0187 | 0.021 | 0.0251 | 0.0095 |
Cytoplasm | 0.0413 | 0.07 | 0.0355 | 0.0374 | 0.03 | 0.0287 | 0.0188 | 0.0068 | 0.0219 | 0.0107 | 0.0084 | 0.0144 | 0.0316 | 0.0848 | 0.0436 | 0.0294 | 0.0626 | 0.0346 |
Cytoplasmic Foci | 0.0234 | 0.0047 | 0.0183 | 0.0051 | 0.0243 | 0.0097 | 0.0021 | 0.0003 | 0.0024 | 0.0006 | 0.0005 | 0.0013 | 0.0081 | 0.0027 | 0.0032 | 0.0104 | 0.0023 | 0.0032 |
Eisosomes | 0.0001 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0.0002 | 0 | 0 | 0 | 0 | 0 |
Endoplasmic Reticulum | 0.2702 | 0.2453 | 0.2367 | 0.1462 | 0.2275 | 0.2392 | 0.4411 | 0.4229 | 0.3762 | 0.3441 | 0.2885 | 0.3737 | 0.4544 | 0.3063 | 0.3367 | 0.1187 | 0.2494 | 0.3252 |
Endosome | 0.1451 | 0.0584 | 0.1339 | 0.1164 | 0.1238 | 0.0781 | 0.0516 | 0.0155 | 0.0513 | 0.0213 | 0.0182 | 0.0335 | 0.061 | 0.0311 | 0.0596 | 0.0653 | 0.0246 | 0.0418 |
Golgi | 0.0095 | 0.0014 | 0.0071 | 0.0028 | 0.0065 | 0.0063 | 0.0023 | 0.0007 | 0.0066 | 0.0006 | 0.0008 | 0.0009 | 0.004 | 0.001 | 0.0019 | 0.0013 | 0.0008 | 0.0013 |
Lipid Particles | 0.0287 | 0.0115 | 0.0125 | 0.0061 | 0.0484 | 0.0071 | 0.0125 | 0.0043 | 0.0161 | 0.0078 | 0.0121 | 0.0087 | 0.0136 | 0.0104 | 0.0087 | 0.0051 | 0.0081 | 0.0059 |
Mitochondria | 0.0154 | 0.0022 | 0.0053 | 0.0027 | 0.0109 | 0.0058 | 0.0022 | 0.0002 | 0.0023 | 0.0003 | 0.0017 | 0.0009 | 0.003 | 0.001 | 0.0016 | 0.0008 | 0.0007 | 0.0012 |
None | 0.0036 | 0.0005 | 0.002 | 0.0002 | 0.0007 | 0.0015 | 0.0004 | 0 | 0.0002 | 0.0001 | 0.0001 | 0.0002 | 0.003 | 0.0007 | 0.0007 | 0.0002 | 0.0015 | 0.0003 |
Nuclear Periphery | 0.064 | 0.0332 | 0.0383 | 0.0209 | 0.0338 | 0.0514 | 0.044 | 0.0229 | 0.0319 | 0.0339 | 0.0379 | 0.0379 | 0.0764 | 0.0475 | 0.053 | 0.02 | 0.0351 | 0.0749 |
Nucleolus | 0.0068 | 0.0044 | 0.0052 | 0.0015 | 0.0123 | 0.002 | 0.0005 | 0.0017 | 0.0006 | 0.0003 | 0.0006 | 0.0005 | 0.0032 | 0.0031 | 0.0013 | 0.001 | 0.0009 | 0.0008 |
Nucleus | 0.0129 | 0.0119 | 0.0099 | 0.0045 | 0.007 | 0.0113 | 0.005 | 0.0025 | 0.0026 | 0.0029 | 0.0054 | 0.0039 | 0.0209 | 0.0176 | 0.0085 | 0.0054 | 0.008 | 0.0255 |
Peroxisomes | 0.0036 | 0.0002 | 0.0025 | 0.0001 | 0.0105 | 0.0013 | 0.0001 | 0 | 0.0001 | 0 | 0 | 0 | 0.0031 | 0 | 0.0001 | 0.0001 | 0.0002 | 0 |
Punctate Nuclear | 0.0086 | 0.0026 | 0.0039 | 0.0002 | 0.001 | 0.0015 | 0.0007 | 0 | 0.0001 | 0.0001 | 0.0001 | 0.0001 | 0.0061 | 0.0017 | 0.0006 | 0.0003 | 0.0054 | 0.0008 |
Vacuole | 0.3186 | 0.5111 | 0.433 | 0.6015 | 0.4215 | 0.5087 | 0.3673 | 0.4699 | 0.4321 | 0.5304 | 0.5532 | 0.4738 | 0.271 | 0.4425 | 0.4241 | 0.6651 | 0.5538 | 0.4297 |
Vacuole Periphery | 0.0301 | 0.0205 | 0.0303 | 0.032 | 0.0299 | 0.0304 | 0.0235 | 0.0176 | 0.0269 | 0.0154 | 0.03 | 0.0297 | 0.0219 | 0.0218 | 0.0344 | 0.0516 | 0.0158 | 0.0408 |
R1 | R2 | |||||||||
---|---|---|---|---|---|---|---|---|---|---|
G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | |
Gene Expression | 84.5675 | 73.5982 | 83.7004 | 80.5189 | 75.4175 | 81.3903 | 91.4011 | 88.44 | 105.7234 | 81.8325 |
Translational Efficiency | 0.9994 | 1.0575 | 0.9147 | 1.0595 | 0.8565 | 1.1239 | 0.9512 | 0.9807 | 0.8614 | 0.8473 |
Dataset | Hit |
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Protein Concentration | ✘ |
Protein Localization | ✔ |
Gene Expression | ✘ |
Translational Efficiency | ✘ |
Temp | Actin Patch (Sac6-tdTomato) | Cortical Patch (Sla1-GFP) | Late Endosome (Snf7-GFP) | Vacuole (Vph1-GFP) |
---|---|---|---|---|
37℃ | ||||
RT |
Gene / Allele | Actin Patch (Sac6-tdTomato) | Cortical Patch (Sla1-GFP) | Late Endosome (Snf7-GFP) | Vacuole (Sac6-tdTomato) |
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Gene | Images |
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Gene | Images |
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