Standard name | |
---|---|
Human Ortholog | |
Description | RNA polymerase I enhancer binding protein; DNA binding protein that binds to genes transcribed by both RNA polymerase I and RNA polymerase II; required for termination of RNA polymerase I transcription; Reb1p bound to DNA acts to block RNA polymerase II readthrough transcription |
ensLOC | DeepLoc | |||||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Localization | WT1 | WT2 | WT3 | RAP60 | RAP140 | RAP220 | RAP300 | RAP380 | RAP460 | RAP540 | RAP620 | RAP700 | HU80 | HU120 | HU160 | rpd3Δ_1 | rpd3Δ_2 | rpd3Δ_3 | WT1 | WT2 | WT3 | AF100 | AF140 | AF180 |
Cortical Patches | 0 | 0 | 0 | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Bud | 0 | 0 | 0 | 0 | 0 | 1 | 3 | – | 3 | 2 | 3 | 5 | 1 | 1 | 0 | 0 | 1 | 0 | 3 | 5 | 1 | 0 | 3 | 3 |
Bud Neck | 0 | 0 | 1 | 0 | 2 | 1 | 3 | – | 6 | 4 | 5 | 2 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 1 |
Bud Site | 0 | 0 | 0 | 0 | 0 | 4 | 5 | – | 8 | 5 | 10 | 9 | 0 | 1 | 2 | 0 | 0 | 0 | – | – | – | – | – | – |
Cell Periphery | 0 | 1 | 0 | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Cytoplasm | 1 | 4 | 7 | 11 | 20 | 6 | 12 | – | 6 | 10 | 10 | 8 | 11 | 23 | 42 | 10 | 7 | 6 | 0 | 0 | 2 | 0 | 0 | 0 |
Endoplasmic Reticulum | 0 | 0 | 0 | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 1 | 1 | 3 | 0 | 0 | 1 | 0 | 1 | 1 |
Endosome | 0 | 2 | 1 | 0 | 1 | 0 | 0 | – | 1 | 0 | 0 | 1 | 1 | 1 | 0 | 1 | 0 | 3 | 0 | 2 | 3 | 1 | 2 | 5 |
Golgi | 0 | 0 | 0 | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 1 | 1 | 0 | 1 | 0 | 1 | 2 |
Mitochondria | 0 | 8 | 0 | 4 | 4 | 16 | 17 | – | 19 | 31 | 42 | 19 | 3 | 2 | 2 | 6 | 2 | 2 | 1 | 0 | 1 | 0 | 4 | 11 |
Nucleus | 257 | 245 | 302 | 277 | 363 | 236 | 323 | – | 276 | 277 | 360 | 353 | 334 | 378 | 346 | 97 | 94 | 100 | 248 | 250 | 327 | 237 | 254 | 248 |
Nuclear Periphery | 0 | 0 | 0 | 3 | 3 | 4 | 7 | – | 3 | 6 | 9 | 2 | 2 | 2 | 1 | 1 | 2 | 1 | 0 | 0 | 0 | 0 | 0 | 6 |
Nucleolus | 37 | 25 | 24 | 20 | 64 | 80 | 132 | – | 206 | 182 | 250 | 220 | 59 | 67 | 100 | 13 | 19 | 22 | 13 | 6 | 13 | 50 | 97 | 102 |
Peroxisomes | 0 | 1 | 1 | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 3 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 |
SpindlePole | 0 | 1 | 0 | 0 | 1 | 0 | 2 | – | 0 | 2 | 1 | 3 | 1 | 2 | 4 | 0 | 1 | 1 | 3 | 1 | 2 | 1 | 0 | 4 |
Vac/Vac Membrane | 3 | 0 | 2 | 1 | 1 | 1 | 1 | – | 2 | 3 | 2 | 6 | 0 | 4 | 1 | 6 | 2 | 7 | 2 | 4 | 5 | 24 | 51 | 64 |
Unique Cell Count | 272 | 263 | 324 | 295 | 431 | 307 | 440 | 444 | 437 | 546 | 522 | 364 | 425 | 435 | 125 | 117 | 134 | 275 | 276 | 366 | 321 | 424 | 455 | |
Labelled Cell Count | 298 | 287 | 338 | 316 | 459 | 349 | 505 | 530 | 522 | 692 | 628 | 412 | 481 | 502 | 135 | 130 | 146 | 275 | 276 | 366 | 321 | 424 | 455 |
Screen | WT1 | WT2 | WT3 | RAP60 | RAP140 | RAP220 | RAP300 | RAP380 | RAP460 | RAP540 | RAP620 | RAP700 | HU80 | HU120 | HU160 | rpd3Δ_1 | rpd3Δ_2 | rpd3Δ_3 | AF100 | AF140 | AF180 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Mean Cell GFP Intensity (1e-4) | 15.9 | 15.3 | 12.9 | 12.4 | 13.0 | 10.1 | 10.7 | – | 10.8 | 11.0 | 10.1 | 11.4 | 13.8 | 13.6 | 12.9 | 15.3 | 17.7 | 14.9 | 13.0 | 13.7 | 13.8 |
Std Deviation (1e-4) | 6.4 | 5.7 | 3.8 | 6.2 | 4.6 | 3.9 | 3.9 | – | 3.6 | 4.0 | 3.9 | 4.3 | 4.6 | 5.1 | 4.7 | 8.5 | 7.4 | 6.0 | 4.5 | 4.8 | 4.0 |
Intensity Change (Log2) | – | – | – | -0.06 | 0.01 | -0.36 | -0.27 | – | -0.26 | -0.23 | -0.36 | -0.18 | 0.09 | 0.07 | -0.01 | 0.24 | 0.45 | 0.21 | 0.01 | 0.08 | 0.1 |
Localization | RAP60 | RAP140 | RAP220 | RAP300 | RAP380 | RAP460 | RAP540 | RAP620 | RAP700 | HU80 | HU120 | HU160 | rpd3Δ_1 | rpd3Δ_2 | rpd3Δ_3 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Cortical Patches | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Bud | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Bud Neck | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Bud Site | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Cell Periphery | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Cytoplasm | 1.2 | 1.8 | -0.2 | 0.5 | – | -0.9 | 0.1 | -0.3 | -0.7 | 0.7 | 2.2 | 4.2 | 0 | 0 | 0 |
Endoplasmic Reticulum | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Endosome | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Golgi | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Mitochondria | 0 | 0 | 4.2 | 3.6 | – | 3.8 | 4.9 | 5.1 | 3.5 | 0 | 0 | 0 | 0 | 0 | 0 |
Nucleus | 0.3 | -3.8 | -5.8 | -7.0 | – | -9.8 | -9.5 | -9.1 | -8.7 | -0.7 | -2.0 | -5.3 | -4.7 | -3.9 | -5.5 |
Nuclear Periphery | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Nucleolus | -0.3 | 3.2 | 6.3 | 7.7 | – | 11.7 | 10.5 | 11.8 | 10.8 | 3.5 | 3.5 | 5.7 | 1.0 | 2.8 | 2.9 |
Peroxisomes | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
SpindlePole | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Vacuole | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
R1 | R2 | R3 | ||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
G1 Pre-START | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | G1 Pre-START | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | G1 Pre-START | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | |
Concentration | 15.4111 | 13.5445 | 13.4265 | 13.7997 | 12.3975 | 13.5174 | 14.1355 | 12.2336 | 11.5954 | 13.1531 | 9.1041 | 11.2537 | 15.6601 | 12.9366 | 11.6319 | 12.2175 | 10.4317 | 11.7883 |
Actin | 0.0187 | 0 | 0.0059 | 0 | 0.0048 | 0 | 0.0053 | 0 | 0.0059 | 0.0004 | 0.0253 | 0.0016 | 0.0151 | 0 | 0.0008 | 0 | 0.0057 | 0.0001 |
Bud | 0.0006 | 0 | 0.0001 | 0 | 0.0002 | 0 | 0.0002 | 0 | 0.0007 | 0.0001 | 0.0021 | 0.0002 | 0.0003 | 0 | 0.0002 | 0 | 0.0005 | 0.0001 |
Bud Neck | 0.0005 | 0 | 0.0002 | 0 | 0.0012 | 0.0004 | 0.0002 | 0 | 0.0001 | 0 | 0.0007 | 0.0003 | 0.0004 | 0 | 0.0002 | 0 | 0.0002 | 0.0003 |
Bud Periphery | 0.0007 | 0 | 0.0001 | 0 | 0.0004 | 0.0001 | 0.0003 | 0 | 0.0012 | 0.0002 | 0.0026 | 0.0005 | 0.0004 | 0 | 0.0001 | 0 | 0.0008 | 0.0001 |
Bud Site | 0.0009 | 0.0003 | 0.0004 | 0 | 0.0005 | 0.0001 | 0.0005 | 0.0001 | 0.0016 | 0.0003 | 0.0033 | 0.0003 | 0.0011 | 0 | 0.0026 | 0 | 0.001 | 0.0001 |
Cell Periphery | 0.0004 | 0 | 0.0001 | 0 | 0.0003 | 0.0001 | 0.0002 | 0 | 0.0003 | 0.0001 | 0.0019 | 0.0001 | 0.0001 | 0 | 0.0001 | 0 | 0.0009 | 0.0001 |
Cytoplasm | 0.0025 | 0 | 0.0007 | 0 | 0.0009 | 0 | 0.001 | 0 | 0.0009 | 0.0001 | 0.0032 | 0.0009 | 0.0045 | 0 | 0.0008 | 0 | 0.0133 | 0.0005 |
Cytoplasmic Foci | 0.0099 | 0 | 0.0022 | 0 | 0.0035 | 0 | 0.0088 | 0.0001 | 0.0064 | 0.0026 | 0.0067 | 0.0031 | 0.0066 | 0 | 0.0067 | 0 | 0.0465 | 0.0019 |
Eisosomes | 0.0001 | 0 | 0.0001 | 0 | 0.0001 | 0 | 0 | 0 | 0.0001 | 0.0001 | 0.0001 | 0 | 0.0001 | 0 | 0.0001 | 0 | 0.0002 | 0 |
Endoplasmic Reticulum | 0.0013 | 0 | 0.0003 | 0 | 0.0011 | 0 | 0.0007 | 0 | 0.0015 | 0 | 0.0034 | 0.0028 | 0.0044 | 0 | 0.0003 | 0 | 0.0009 | 0.0008 |
Endosome | 0.0068 | 0 | 0.0011 | 0 | 0.0107 | 0 | 0.014 | 0 | 0.0084 | 0.0002 | 0.0157 | 0.0081 | 0.0131 | 0 | 0.001 | 0 | 0.0064 | 0.002 |
Golgi | 0.0021 | 0 | 0.0005 | 0 | 0.0022 | 0 | 0.004 | 0 | 0.0037 | 0.0002 | 0.0044 | 0.0014 | 0.0037 | 0 | 0.0007 | 0 | 0.0032 | 0.0002 |
Lipid Particles | 0.0123 | 0 | 0.0021 | 0 | 0.0056 | 0 | 0.0052 | 0 | 0.0038 | 0.0041 | 0.004 | 0.0008 | 0.0076 | 0 | 0.0033 | 0 | 0.0314 | 0.0011 |
Mitochondria | 0.0103 | 0.0002 | 0.0007 | 0.0001 | 0.0016 | 0.0002 | 0.0037 | 0.0003 | 0.0083 | 0.0147 | 0.0196 | 0.0017 | 0.0024 | 0.0003 | 0.0017 | 0.0004 | 0.0239 | 0.0003 |
None | 0.0039 | 0 | 0.0008 | 0 | 0.0015 | 0 | 0.0006 | 0 | 0.0012 | 0.0007 | 0.0016 | 0.0004 | 0.0088 | 0 | 0.0025 | 0 | 0.016 | 0.0002 |
Nuclear Periphery | 0.0097 | 0.0002 | 0.0018 | 0.0009 | 0.0068 | 0.0001 | 0.0031 | 0.0002 | 0.0083 | 0.0012 | 0.0064 | 0.0095 | 0.0154 | 0.0003 | 0.0021 | 0.0016 | 0.004 | 0.0043 |
Nucleolus | 0.0861 | 0.043 | 0.0373 | 0.0124 | 0.281 | 0.151 | 0.0693 | 0.0261 | 0.0379 | 0.0507 | 0.2849 | 0.1488 | 0.0224 | 0.0315 | 0.0201 | 0.089 | 0.2667 | 0.1309 |
Nucleus | 0.8205 | 0.9556 | 0.9397 | 0.9865 | 0.6597 | 0.8478 | 0.8568 | 0.9719 | 0.9016 | 0.9189 | 0.5979 | 0.8109 | 0.8708 | 0.9675 | 0.9501 | 0.9082 | 0.5343 | 0.8492 |
Peroxisomes | 0.0047 | 0 | 0.0003 | 0 | 0.0007 | 0 | 0.0024 | 0 | 0.0009 | 0.0006 | 0.002 | 0.0011 | 0.004 | 0 | 0.0018 | 0 | 0.0115 | 0.0002 |
Punctate Nuclear | 0.0038 | 0.0005 | 0.0047 | 0.0001 | 0.015 | 0.0001 | 0.0224 | 0.0013 | 0.005 | 0.0025 | 0.0047 | 0.0045 | 0.0148 | 0.0003 | 0.0038 | 0.0001 | 0.0221 | 0.0073 |
Vacuole | 0.0023 | 0 | 0.0005 | 0 | 0.0014 | 0.0001 | 0.0006 | 0 | 0.0009 | 0.0005 | 0.005 | 0.0009 | 0.0027 | 0 | 0.0005 | 0.0001 | 0.0035 | 0.0002 |
Vacuole Periphery | 0.0019 | 0 | 0.0005 | 0 | 0.0008 | 0.0001 | 0.0006 | 0 | 0.0013 | 0.0018 | 0.0046 | 0.002 | 0.0012 | 0.0001 | 0.0007 | 0.0003 | 0.0067 | 0.0002 |
R1 | R2 | |||||||||
---|---|---|---|---|---|---|---|---|---|---|
G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | |
Gene Expression | 30.6123 | 40.947 | 20.156 | 28.9082 | 34.3982 | 17.6773 | 40.2742 | 41.3614 | 28.5946 | 36.3838 |
Translational Efficiency | 1.8525 | 1.9067 | 2.3593 | 1.6346 | 1.709 | 2.5751 | 1.7143 | 1.4831 | 1.7868 | 1.6397 |
Dataset | Hit |
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Protein Concentration | ✘ |
Protein Localization | ✘ |
Gene Expression | ✘ |
Translational Efficiency | ✘ |
Temp | Actin Patch (Sac6-tdTomato) | Cortical Patch (Sla1-GFP) | Late Endosome (Snf7-GFP) | Vacuole (Vph1-GFP) |
---|---|---|---|---|
37℃ | ||||
RT |
Gene / Allele | Actin Patch (Sac6-tdTomato) | Cortical Patch (Sla1-GFP) | Late Endosome (Snf7-GFP) | Vacuole (Sac6-tdTomato) |
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Gene | Images |
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Gene | Images |
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