Standard name | |
---|---|
Human Ortholog | |
Description | RNA binding protein that negatively regulates growth rate; interacts with the 3' UTR of the mitochondrial porin (POR1) mRNA and enhances its degradation; overexpression impairs mitochondrial function; interacts with Dhh1p to mediate POR1 mRNA decay; expressed in stationary phase |
ensLOC | DeepLoc | |||||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Localization | WT1 | WT2 | WT3 | RAP60 | RAP140 | RAP220 | RAP300 | RAP380 | RAP460 | RAP540 | RAP620 | RAP700 | HU80 | HU120 | HU160 | rpd3Δ_1 | rpd3Δ_2 | rpd3Δ_3 | WT1 | WT2 | WT3 | AF100 | AF140 | AF180 |
Cortical Patches | 0 | 1 | 0 | 1 | 0 | 2 | 0 | – | 1 | 4 | 1 | 2 | 0 | 0 | 0 | 0 | 0 | – | 0 | 0 | 1 | 0 | 0 | 0 |
Bud | 0 | 0 | 0 | 0 | 1 | 2 | 1 | – | 0 | 0 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 1 |
Bud Neck | 0 | 0 | 0 | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | – | 0 | 0 | 1 | 0 | 0 | 0 |
Bud Site | 0 | 0 | 0 | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | – | – | – | – | – | – | – |
Cell Periphery | 0 | 6 | 6 | 7 | 7 | 6 | 7 | – | 3 | 12 | 13 | 13 | 0 | 7 | 4 | 10 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 |
Cytoplasm | 17 | 209 | 162 | 164 | 192 | 229 | 229 | – | 123 | 136 | 123 | 127 | 186 | 251 | 344 | 50 | 17 | – | 49 | 199 | 150 | 76 | 194 | 207 |
Endoplasmic Reticulum | 0 | 1 | 0 | 0 | 4 | 7 | 4 | – | 15 | 6 | 8 | 4 | 0 | 1 | 0 | 0 | 1 | – | 0 | 1 | 2 | 1 | 1 | 2 |
Endosome | 0 | 0 | 0 | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | – | 0 | 0 | 0 | 0 | 3 | 0 |
Golgi | 0 | 1 | 0 | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | – | 0 | 1 | 1 | 0 | 0 | 0 |
Mitochondria | 0 | 0 | 0 | 0 | 0 | 6 | 19 | – | 21 | 24 | 49 | 44 | 0 | 0 | 0 | 0 | 0 | – | 0 | 0 | 1 | 0 | 1 | 1 |
Nucleus | 0 | 1 | 1 | 0 | 2 | 1 | 1 | – | 1 | 2 | 1 | 3 | 1 | 0 | 1 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 1 |
Nuclear Periphery | 0 | 0 | 0 | 0 | 0 | 0 | 0 | – | 0 | 2 | 0 | 2 | 0 | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 1 |
Nucleolus | 0 | 0 | 0 | 0 | 1 | 0 | 1 | – | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 |
Peroxisomes | 0 | 0 | 0 | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 |
SpindlePole | 0 | 0 | 0 | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 |
Vac/Vac Membrane | 0 | 1 | 5 | 3 | 20 | 24 | 20 | – | 8 | 35 | 16 | 44 | 0 | 0 | 3 | 0 | 1 | – | 0 | 3 | 1 | 0 | 0 | 0 |
Unique Cell Count | 17 | 212 | 166 | 167 | 216 | 264 | 265 | 161 | 200 | 183 | 208 | 186 | 252 | 347 | 51 | 18 | 52 | 209 | 165 | 82 | 208 | 220 | ||
Labelled Cell Count | 17 | 220 | 174 | 175 | 227 | 277 | 282 | 172 | 221 | 212 | 241 | 187 | 259 | 353 | 61 | 19 | 52 | 209 | 165 | 82 | 208 | 220 |
Screen | WT1 | WT2 | WT3 | RAP60 | RAP140 | RAP220 | RAP300 | RAP380 | RAP460 | RAP540 | RAP620 | RAP700 | HU80 | HU120 | HU160 | rpd3Δ_1 | rpd3Δ_2 | rpd3Δ_3 | AF100 | AF140 | AF180 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Mean Cell GFP Intensity (1e-4) | 10.3 | 11.2 | 11.1 | 10.3 | 11.9 | 10.3 | 10.3 | – | 8.9 | 10.0 | 8.5 | 9.2 | 10.6 | 11.1 | 11.0 | 14.6 | 12.4 | – | 9.2 | 10.5 | 10.9 |
Std Deviation (1e-4) | 1.2 | 1.7 | 2.0 | 2.2 | 2.4 | 1.8 | 1.8 | – | 2.0 | 2.3 | 2.1 | 2.2 | 1.5 | 1.4 | 1.5 | 1.9 | 1.9 | – | 1.8 | 1.6 | 1.7 |
Intensity Change (Log2) | – | – | – | -0.1 | 0.1 | -0.11 | -0.11 | – | -0.31 | -0.15 | -0.39 | -0.27 | -0.06 | 0.01 | -0.02 | 0.39 | 0.17 | – | -0.26 | -0.08 | -0.03 |
Localization | RAP60 | RAP140 | RAP220 | RAP300 | RAP380 | RAP460 | RAP540 | RAP620 | RAP700 | HU80 | HU120 | HU160 | rpd3Δ_1 | rpd3Δ_2 | rpd3Δ_3 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Cortical Patches | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | – |
Bud | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | – |
Bud Neck | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | – |
Bud Site | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | – |
Cell Periphery | 0.3 | -0.2 | 0 | -0.6 | – | 0 | 1.1 | 1.4 | 1.2 | 0 | -0.5 | 0 | 0 | 0 | – |
Cytoplasm | 0.4 | -3.2 | -3.8 | -3.9 | – | -5.7 | -7.2 | -7.3 | -8.4 | 2.1 | 1.9 | 1.4 | 0.2 | -0.8 | – |
Endoplasmic Reticulum | 0 | 0 | 0 | 0 | – | 4.0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | – |
Endosome | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | – |
Golgi | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | – |
Mitochondria | 0 | 0 | 0 | 3.5 | – | 4.8 | 4.6 | 7.2 | 6.3 | 0 | 0 | 0 | 0 | 0 | – |
Nucleus | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | – |
Nuclear Periphery | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | – |
Nucleolus | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | – |
Peroxisomes | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | – |
SpindlePole | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | – |
Vacuole | 0 | 2.4 | 2.4 | 2.0 | – | 0.9 | 4.4 | 2.2 | 5.2 | 0 | 0 | 0 | 0 | 0 | – |
R1 | R2 | R3 | ||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
G1 Pre-START | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | G1 Pre-START | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | G1 Pre-START | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | |
Concentration | 4.5299 | 5.3963 | 5.3157 | 5.2003 | 3.4751 | 5.2344 | 6.1797 | 7.6477 | 6.9097 | 6.2253 | 5.9414 | 7.2387 | 7.6508 | 8.4193 | 7.6815 | 7.7508 | 7.2862 | 7.8984 |
Actin | 0.0057 | 0.0084 | 0.0071 | 0.0004 | 0.0036 | 0.0138 | 0.0323 | 0.0007 | 0.003 | 0.0354 | 0.0473 | 0.0019 | 0.0212 | 0.0006 | 0.002 | 0.0002 | 0.0006 | 0.0008 |
Bud | 0.0002 | 0.0002 | 0.0023 | 0.0001 | 0.0007 | 0.0004 | 0.0034 | 0.0054 | 0.0034 | 0.0043 | 0.0004 | 0.0015 | 0.0004 | 0.0011 | 0.0005 | 0.0001 | 0.0001 | 0.0005 |
Bud Neck | 0.007 | 0.0003 | 0.0003 | 0.0003 | 0.0009 | 0.0011 | 0.0016 | 0.0001 | 0.0003 | 0.0015 | 0.0011 | 0.0012 | 0.0022 | 0.0002 | 0.0003 | 0.0003 | 0.0003 | 0.0009 |
Bud Periphery | 0.0001 | 0.0001 | 0.001 | 0 | 0.0003 | 0.0004 | 0.0018 | 0.0017 | 0.0013 | 0.0031 | 0.0006 | 0.0005 | 0.0005 | 0.0004 | 0.0006 | 0 | 0 | 0.0003 |
Bud Site | 0.0037 | 0.0012 | 0.001 | 0 | 0.0114 | 0.0007 | 0.0117 | 0.005 | 0.0013 | 0.02 | 0.0008 | 0.0001 | 0.001 | 0.0008 | 0.0003 | 0 | 0.0002 | 0.0001 |
Cell Periphery | 0.0002 | 0.0002 | 0.0001 | 0 | 0.0001 | 0.0001 | 0.0003 | 0.0001 | 0.0002 | 0.0003 | 0.0001 | 0 | 0.0001 | 0.0001 | 0.0001 | 0 | 0 | 0 |
Cytoplasm | 0.85 | 0.9186 | 0.9054 | 0.9462 | 0.847 | 0.9275 | 0.7858 | 0.9708 | 0.9124 | 0.8048 | 0.825 | 0.9638 | 0.8951 | 0.9872 | 0.965 | 0.9865 | 0.9288 | 0.9811 |
Cytoplasmic Foci | 0.0312 | 0.0044 | 0.0176 | 0.0026 | 0.0457 | 0.0069 | 0.0382 | 0.0027 | 0.0143 | 0.0185 | 0.029 | 0.0106 | 0.0129 | 0.0022 | 0.0043 | 0.002 | 0.0116 | 0.0032 |
Eisosomes | 0.0001 | 0.0001 | 0.0001 | 0 | 0 | 0.0001 | 0.0002 | 0 | 0 | 0.0001 | 0.0002 | 0 | 0.0001 | 0 | 0 | 0 | 0 | 0 |
Endoplasmic Reticulum | 0.0139 | 0.0033 | 0.0027 | 0.0364 | 0.0039 | 0.0053 | 0.0159 | 0.0019 | 0.0086 | 0.0092 | 0.0016 | 0.0053 | 0.0108 | 0.0013 | 0.005 | 0.0028 | 0.0033 | 0.0022 |
Endosome | 0.0168 | 0.007 | 0.0096 | 0.003 | 0.0509 | 0.009 | 0.0259 | 0.0011 | 0.0123 | 0.0202 | 0.0076 | 0.0047 | 0.0209 | 0.0009 | 0.0075 | 0.002 | 0.0234 | 0.0035 |
Golgi | 0.0097 | 0.0101 | 0.0134 | 0.0001 | 0.021 | 0.0039 | 0.0087 | 0.0001 | 0.0109 | 0.0045 | 0.02 | 0.0019 | 0.003 | 0.0001 | 0.0013 | 0.0001 | 0.0013 | 0.0004 |
Lipid Particles | 0.0066 | 0.0009 | 0.0026 | 0 | 0.0015 | 0.0051 | 0.007 | 0 | 0.0027 | 0.0179 | 0.0095 | 0 | 0.0012 | 0 | 0.0012 | 0 | 0.0067 | 0.0005 |
Mitochondria | 0.001 | 0.0017 | 0.01 | 0.0001 | 0.0028 | 0.0014 | 0.0086 | 0.0008 | 0.0013 | 0.0193 | 0.0127 | 0.0012 | 0.0031 | 0.0001 | 0.0008 | 0.0001 | 0.0005 | 0.0002 |
None | 0.0292 | 0.0363 | 0.0124 | 0.0018 | 0.0014 | 0.0013 | 0.0158 | 0.006 | 0.0143 | 0.0077 | 0.0036 | 0.0021 | 0.0075 | 0.0018 | 0.0029 | 0.0014 | 0.0034 | 0.0016 |
Nuclear Periphery | 0.0032 | 0.0026 | 0.0009 | 0.0043 | 0.0009 | 0.0065 | 0.0168 | 0.0008 | 0.0007 | 0.0035 | 0.0009 | 0.0009 | 0.0088 | 0.0005 | 0.0011 | 0.0008 | 0.005 | 0.0008 |
Nucleolus | 0.0007 | 0.0001 | 0 | 0 | 0.0001 | 0.0006 | 0.0005 | 0.0001 | 0.0001 | 0.0005 | 0.0001 | 0 | 0.0004 | 0 | 0.0001 | 0 | 0.0002 | 0 |
Nucleus | 0.0019 | 0.002 | 0.001 | 0.0034 | 0.0012 | 0.0027 | 0.0048 | 0.0016 | 0.0014 | 0.005 | 0.0008 | 0.0014 | 0.0036 | 0.0021 | 0.0019 | 0.0025 | 0.0048 | 0.0024 |
Peroxisomes | 0.0076 | 0.0002 | 0.01 | 0 | 0.0037 | 0.0011 | 0.0129 | 0.0001 | 0.0094 | 0.0177 | 0.0083 | 0.0016 | 0.0023 | 0 | 0.0009 | 0 | 0.0012 | 0.0003 |
Punctate Nuclear | 0.0093 | 0.0006 | 0.0014 | 0.0001 | 0.0008 | 0.0103 | 0.0046 | 0.0005 | 0.0007 | 0.0014 | 0.0295 | 0.0004 | 0.0022 | 0.0002 | 0.0005 | 0.0001 | 0.0067 | 0.0005 |
Vacuole | 0.0013 | 0.0013 | 0.0008 | 0.0007 | 0.0016 | 0.0015 | 0.0022 | 0.0005 | 0.0013 | 0.0037 | 0.0004 | 0.0005 | 0.0017 | 0.0003 | 0.003 | 0.001 | 0.0012 | 0.0004 |
Vacuole Periphery | 0.0005 | 0.0003 | 0.0002 | 0.0002 | 0.0006 | 0.0005 | 0.0013 | 0.0001 | 0.0002 | 0.0012 | 0.0003 | 0.0002 | 0.0009 | 0.0001 | 0.0007 | 0.0002 | 0.0005 | 0.0001 |
R1 | R2 | |||||||||
---|---|---|---|---|---|---|---|---|---|---|
G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | |
Gene Expression | 33.6104 | 35.1754 | 26.1016 | 35.9651 | 28.6973 | 40.4194 | 40.7525 | 42.508 | 38.8957 | 36.6677 |
Translational Efficiency | 1.3108 | 1.3691 | 1.607 | 1.2707 | 1.4354 | 1.3969 | 1.1792 | 1.3567 | 1.4003 | 1.3031 |
Dataset | Hit |
---|---|
Protein Concentration | ✘ |
Protein Localization | ✘ |
Gene Expression | ✘ |
Translational Efficiency | ✔ |
Temp | Actin Patch (Sac6-tdTomato) | Cortical Patch (Sla1-GFP) | Late Endosome (Snf7-GFP) | Vacuole (Vph1-GFP) |
---|---|---|---|---|
37℃ | ||||
RT |
Gene / Allele | Actin Patch (Sac6-tdTomato) | Cortical Patch (Sla1-GFP) | Late Endosome (Snf7-GFP) | Vacuole (Sac6-tdTomato) |
---|
Gene | Images |
---|
Gene | Images |
---|