Standard name | |
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Human Ortholog | |
Description | Component of the HAT/Core module of the SAGA, SLIK, and ADA complexes; HAT/Core module also contains Gcn5p, Ngg1p, and Ada2p; binds methylated histone H3K4; involved in transcriptional regulation through SAGA and TBP recruitment to target promoters and H3 acetylation |
ensLOC | DeepLoc | |||||||||||||||||||||||
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Localization | WT1 | WT2 | WT3 | RAP60 | RAP140 | RAP220 | RAP300 | RAP380 | RAP460 | RAP540 | RAP620 | RAP700 | HU80 | HU120 | HU160 | rpd3Δ_1 | rpd3Δ_2 | rpd3Δ_3 | WT1 | WT2 | WT3 | AF100 | AF140 | AF180 |
Cortical Patches | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Bud | 0 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 1 |
Bud Neck | 0 | 0 | 0 | 1 | 0 | 0 | 1 | 0 | 1 | 3 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Bud Site | 0 | 0 | 0 | 0 | 0 | 0 | 6 | 4 | 6 | 3 | 2 | 2 | 0 | 1 | 1 | 0 | 0 | 0 | – | – | – | – | – | – |
Cell Periphery | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Cytoplasm | 0 | 3 | 6 | 17 | 16 | 15 | 15 | 19 | 14 | 9 | 5 | 6 | 2 | 20 | 21 | 7 | 5 | 3 | 0 | 2 | 0 | 0 | 1 | 0 |
Endoplasmic Reticulum | 0 | 2 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 4 | 1 | 3 | 0 | 0 | 0 | 0 | 0 | 0 |
Endosome | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 1 | 1 | 0 | 1 | 2 | 1 | 1 | 1 | 2 | 0 | 1 | 1 |
Golgi | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 1 | 0 | 0 | 1 |
Mitochondria | 0 | 8 | 1 | 4 | 1 | 5 | 4 | 2 | 19 | 25 | 10 | 18 | 0 | 1 | 0 | 8 | 3 | 1 | 0 | 2 | 1 | 0 | 0 | 1 |
Nucleus | 85 | 60 | 227 | 487 | 259 | 175 | 234 | 209 | 141 | 221 | 59 | 85 | 36 | 160 | 145 | 135 | 134 | 141 | 91 | 72 | 215 | 60 | 121 | 93 |
Nuclear Periphery | 0 | 0 | 1 | 0 | 0 | 1 | 3 | 1 | 1 | 1 | 0 | 1 | 1 | 0 | 4 | 2 | 1 | 4 | 0 | 0 | 0 | 0 | 0 | 0 |
Nucleolus | 22 | 15 | 22 | 59 | 15 | 20 | 38 | 38 | 78 | 88 | 45 | 52 | 8 | 7 | 14 | 15 | 21 | 29 | 10 | 5 | 24 | 8 | 18 | 24 |
Peroxisomes | 2 | 0 | 0 | 1 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
SpindlePole | 2 | 0 | 2 | 0 | 0 | 0 | 1 | 3 | 0 | 0 | 0 | 1 | 2 | 3 | 5 | 1 | 1 | 2 | 1 | 0 | 1 | 0 | 0 | 3 |
Vac/Vac Membrane | 0 | 1 | 2 | 2 | 2 | 4 | 2 | 5 | 1 | 1 | 0 | 0 | 3 | 2 | 4 | 3 | 3 | 0 | 1 | 3 | 6 | 2 | 10 | 10 |
Unique Cell Count | 89 | 70 | 245 | 539 | 286 | 203 | 280 | 257 | 193 | 281 | 86 | 126 | 46 | 186 | 178 | 149 | 150 | 162 | 110 | 91 | 257 | 77 | 161 | 140 |
Labelled Cell Count | 111 | 90 | 261 | 572 | 293 | 220 | 305 | 283 | 262 | 352 | 121 | 165 | 53 | 195 | 195 | 176 | 171 | 184 | 110 | 91 | 257 | 77 | 161 | 140 |
Screen | WT1 | WT2 | WT3 | RAP60 | RAP140 | RAP220 | RAP300 | RAP380 | RAP460 | RAP540 | RAP620 | RAP700 | HU80 | HU120 | HU160 | rpd3Δ_1 | rpd3Δ_2 | rpd3Δ_3 | AF100 | AF140 | AF180 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Mean Cell GFP Intensity (1e-4) | 8.5 | 6.2 | 8.9 | 8.4 | 9.5 | 7.5 | 7.1 | 7.2 | 6.3 | 6.5 | 5.9 | 5.8 | 7.6 | 8.1 | 7.8 | 6.6 | 8.5 | 8.4 | 9.4 | 9.6 | 8.8 |
Std Deviation (1e-4) | 1.7 | 1.2 | 1.6 | 1.8 | 3.2 | 1.6 | 1.7 | 1.8 | 1.9 | 1.6 | 1.6 | 1.2 | 1.9 | 2.3 | 2.3 | 1.4 | 2.2 | 2.1 | 2.0 | 2.0 | 1.9 |
Intensity Change (Log2) | – | – | – | -0.09 | 0.09 | -0.26 | -0.33 | -0.31 | -0.51 | -0.47 | -0.59 | -0.63 | -0.23 | -0.13 | -0.19 | -0.44 | -0.07 | -0.1 | 0.08 | 0.1 | -0.03 |
Localization | RAP60 | RAP140 | RAP220 | RAP300 | RAP380 | RAP460 | RAP540 | RAP620 | RAP700 | HU80 | HU120 | HU160 | rpd3Δ_1 | rpd3Δ_2 | rpd3Δ_3 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Cortical Patches | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Bud | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Bud Neck | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Bud Site | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Cell Periphery | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Cytoplasm | 0.5 | 1.8 | 2.5 | 1.7 | 2.5 | 2.4 | 0.5 | 0 | 0 | 0 | 3.6 | 3.9 | 0 | 0 | 0 |
Endoplasmic Reticulum | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Endosome | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Golgi | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Mitochondria | 0 | 0 | 0 | 0 | 0 | 4.7 | 4.5 | 0 | 5.7 | 0 | 0 | 0 | 0 | 0 | 0 |
Nucleus | -1.0 | -0.9 | -2.2 | -3.2 | -3.8 | -5.6 | -4.5 | -5.6 | -6.3 | -3.0 | -2.3 | -3.5 | -0.7 | -1.1 | -1.9 |
Nuclear Periphery | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Nucleolus | 0.8 | -1.7 | 0.3 | 1.6 | 2.0 | 7.8 | 6.3 | 8.6 | 7.4 | 0 | -2.1 | -0.4 | 0.4 | 1.6 | 2.7 |
Peroxisomes | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
SpindlePole | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Vacuole | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
R1 | R2 | R3 | ||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
G1 Pre-START | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | G1 Pre-START | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | G1 Pre-START | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | |
Concentration | 3.2278 | 2.9085 | 2.9698 | 2.1086 | 2.4898 | 2.773 | 6.0845 | 6.0837 | 6.1375 | 6.0522 | 5.6588 | 5.8158 | 3.2857 | 3.5777 | 3.2223 | 2.9003 | 2.6304 | 3.0867 |
Actin | 0.036 | 0.0003 | 0.007 | 0 | 0.0016 | 0.0004 | 0.0089 | 0 | 0.0009 | 0 | 0.0241 | 0.0003 | 0.0013 | 0 | 0.0043 | 0.0035 | 0.035 | 0.0028 |
Bud | 0.0005 | 0.0001 | 0.0005 | 0 | 0.0001 | 0.0001 | 0.0004 | 0 | 0.0002 | 0 | 0.0006 | 0.0004 | 0.0006 | 0 | 0.0002 | 0.0002 | 0.0007 | 0.0001 |
Bud Neck | 0.0012 | 0.0002 | 0.0015 | 0.0001 | 0.0007 | 0.0005 | 0.0045 | 0.0002 | 0.001 | 0.0001 | 0.0004 | 0.0008 | 0.0017 | 0.0001 | 0.0004 | 0.0003 | 0.0027 | 0.0025 |
Bud Periphery | 0.0012 | 0.0006 | 0.0009 | 0 | 0.0003 | 0.0005 | 0.0008 | 0 | 0.0004 | 0 | 0.0012 | 0.001 | 0.0016 | 0 | 0.0004 | 0.0003 | 0.0006 | 0.0002 |
Bud Site | 0.0024 | 0.0003 | 0.0027 | 0 | 0.0003 | 0.0002 | 0.0056 | 0.0001 | 0.0016 | 0 | 0.0012 | 0.0008 | 0.0014 | 0.0001 | 0.0014 | 0.0007 | 0.0077 | 0.0002 |
Cell Periphery | 0.0006 | 0.0002 | 0.0002 | 0 | 0.0001 | 0.0002 | 0.0003 | 0 | 0.0002 | 0 | 0.0001 | 0.0003 | 0.0004 | 0 | 0.0001 | 0.0001 | 0.0002 | 0.0001 |
Cytoplasm | 0.0013 | 0 | 0.0013 | 0 | 0.0001 | 0.0003 | 0.0027 | 0 | 0.0002 | 0 | 0.0004 | 0.0007 | 0.0023 | 0 | 0.008 | 0.0002 | 0.0095 | 0.0004 |
Cytoplasmic Foci | 0.0074 | 0.0003 | 0.0054 | 0 | 0.0192 | 0.0002 | 0.0104 | 0 | 0.0001 | 0 | 0.0021 | 0.0023 | 0.0051 | 0 | 0.0031 | 0.0083 | 0.0313 | 0.0004 |
Eisosomes | 0.0002 | 0.0001 | 0.0001 | 0 | 0 | 0 | 0.0001 | 0 | 0.0001 | 0 | 0.0001 | 0 | 0 | 0 | 0 | 0.0001 | 0.0001 | 0 |
Endoplasmic Reticulum | 0.0037 | 0.0001 | 0.0015 | 0 | 0 | 0.0007 | 0.0015 | 0 | 0.0002 | 0 | 0.0041 | 0.0004 | 0.0005 | 0 | 0.0004 | 0.0006 | 0.0014 | 0.0007 |
Endosome | 0.0107 | 0.0002 | 0.0127 | 0 | 0.0007 | 0.0007 | 0.0082 | 0 | 0.0002 | 0 | 0.0091 | 0.0011 | 0.0023 | 0 | 0.007 | 0.0175 | 0.0385 | 0.0041 |
Golgi | 0.0046 | 0.0002 | 0.0049 | 0 | 0.0009 | 0.0001 | 0.0035 | 0 | 0.0001 | 0 | 0.0063 | 0.0011 | 0.0017 | 0 | 0.0047 | 0.0121 | 0.0083 | 0.0086 |
Lipid Particles | 0.0067 | 0.0043 | 0.0123 | 0 | 0.0053 | 0.0009 | 0.0084 | 0 | 0.0002 | 0 | 0.0015 | 0.0018 | 0.006 | 0 | 0.0056 | 0.0357 | 0.0099 | 0.0006 |
Mitochondria | 0.0052 | 0.0058 | 0.008 | 0.0001 | 0.0011 | 0.0041 | 0.0036 | 0.0001 | 0.0014 | 0 | 0.0156 | 0.0007 | 0.0057 | 0.0003 | 0.0036 | 0.0394 | 0.0024 | 0.0028 |
None | 0.0011 | 0.0002 | 0.001 | 0 | 0.0002 | 0.0002 | 0.006 | 0 | 0.0003 | 0 | 0.0006 | 0.0001 | 0.0008 | 0 | 0.0002 | 0.0002 | 0.0031 | 0.0001 |
Nuclear Periphery | 0.0089 | 0.0072 | 0.0064 | 0.0002 | 0.0012 | 0.0102 | 0.0117 | 0.0003 | 0.0007 | 0.0001 | 0.0244 | 0.0002 | 0.0046 | 0.0001 | 0.0011 | 0.0023 | 0.0026 | 0.0023 |
Nucleolus | 0.0406 | 0.0363 | 0.028 | 0.0102 | 0.1817 | 0.0802 | 0.0447 | 0.0252 | 0.0184 | 0.0165 | 0.0852 | 0.0773 | 0.0449 | 0.0251 | 0.0162 | 0.0197 | 0.0886 | 0.0738 |
Nucleus | 0.846 | 0.9398 | 0.892 | 0.9893 | 0.7717 | 0.8972 | 0.8496 | 0.9729 | 0.9726 | 0.9831 | 0.8141 | 0.9058 | 0.8925 | 0.974 | 0.939 | 0.8478 | 0.7386 | 0.899 |
Peroxisomes | 0.0015 | 0.0006 | 0.0037 | 0 | 0.011 | 0.0001 | 0.0041 | 0 | 0.0001 | 0 | 0.0022 | 0.0028 | 0.0086 | 0 | 0.0024 | 0.0045 | 0.0043 | 0.0001 |
Punctate Nuclear | 0.0173 | 0.0018 | 0.0061 | 0.0001 | 0.0031 | 0.001 | 0.0223 | 0.001 | 0.0008 | 0.0001 | 0.0041 | 0.0005 | 0.0144 | 0.0001 | 0.0004 | 0.0011 | 0.0121 | 0.0003 |
Vacuole | 0.002 | 0.0005 | 0.0023 | 0 | 0.0004 | 0.001 | 0.0018 | 0 | 0.0003 | 0 | 0.0008 | 0.0013 | 0.0026 | 0 | 0.0011 | 0.0029 | 0.002 | 0.0007 |
Vacuole Periphery | 0.0011 | 0.001 | 0.0014 | 0 | 0.0002 | 0.0011 | 0.001 | 0 | 0.0001 | 0 | 0.0016 | 0.0001 | 0.001 | 0 | 0.0004 | 0.0025 | 0.0005 | 0.0005 |
R1 | R2 | |||||||||
---|---|---|---|---|---|---|---|---|---|---|
G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | |
Gene Expression | 29.707 | 26.5563 | 23.4594 | 28.532 | 28.4288 | 46.6567 | 31.3262 | 33.2248 | 44.3713 | 32.6404 |
Translational Efficiency | 1.0841 | 0.9471 | 1.051 | 1.1002 | 1.0051 | 0.6182 | 0.7548 | 0.8854 | 0.6382 | 0.7614 |
Dataset | Hit |
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Protein Concentration | ✘ |
Protein Localization | ✘ |
Gene Expression | ✘ |
Translational Efficiency | ✘ |
Temp | Actin Patch (Sac6-tdTomato) | Cortical Patch (Sla1-GFP) | Late Endosome (Snf7-GFP) | Vacuole (Vph1-GFP) |
---|---|---|---|---|
37℃ | ||||
RT |
Gene / Allele | Actin Patch (Sac6-tdTomato) | Cortical Patch (Sla1-GFP) | Late Endosome (Snf7-GFP) | Vacuole (Sac6-tdTomato) |
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Gene | Images |
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Gene | Images |
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