Standard name | |
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Human Ortholog | |
Description | Component of conserved R2TP complex (Rvb1-Rvb2-Tah1-Pih1); R2TP complex interacts with Hsp90 (Hsp82p and Hsc82p) to mediate assembly of large protein complexes such as box C/D snoRNPs and RNA polymerase II; contains a single TPR domain with at least two TPR motifs; plays a role in determining prion variants |
ensLOC | DeepLoc | |||||||||||||||||||||||
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Localization | WT1 | WT2 | WT3 | RAP60 | RAP140 | RAP220 | RAP300 | RAP380 | RAP460 | RAP540 | RAP620 | RAP700 | HU80 | HU120 | HU160 | rpd3Δ_1 | rpd3Δ_2 | rpd3Δ_3 | WT1 | WT2 | WT3 | AF100 | AF140 | AF180 |
Cortical Patches | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 1 | 0 | 0 | 0 |
Bud | 0 | 0 | 7 | 5 | 0 | 1 | 3 | 4 | 4 | 3 | 10 | 8 | 1 | 2 | 0 | 0 | – | 0 | 1 | 1 | 1 | 0 | 0 | 5 |
Bud Neck | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | – | 0 | 0 | 1 | 1 | 0 | 0 | 1 |
Bud Site | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | – | 0 | – | – | – | – | – | – |
Cell Periphery | 0 | 1 | 0 | 2 | 2 | 1 | 2 | 1 | 1 | 5 | 4 | 6 | 2 | 2 | 5 | 3 | – | 5 | 0 | 0 | 0 | 0 | 0 | 0 |
Cytoplasm | 538 | 407 | 230 | 239 | 265 | 279 | 264 | 306 | 242 | 245 | 258 | 274 | 252 | 389 | 482 | 61 | – | 38 | 529 | 361 | 236 | 169 | 357 | 338 |
Endoplasmic Reticulum | 3 | 2 | 0 | 0 | 2 | 2 | 2 | 0 | 1 | 2 | 3 | 2 | 1 | 0 | 2 | 1 | – | 0 | 0 | 1 | 1 | 0 | 4 | 5 |
Endosome | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 1 | 1 | – | 0 | 5 | 2 | 0 | 0 | 0 | 2 |
Golgi | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | – | 0 | 1 | 0 | 1 | 2 | 5 | 5 |
Mitochondria | 4 | 0 | 14 | 40 | 13 | 73 | 113 | 147 | 184 | 140 | 232 | 234 | 1 | 0 | 0 | 0 | – | 1 | 3 | 3 | 1 | 0 | 4 | 1 |
Nucleus | 9 | 9 | 4 | 0 | 2 | 1 | 2 | 13 | 5 | 10 | 10 | 13 | 5 | 0 | 0 | 1 | – | 2 | 6 | 17 | 5 | 3 | 2 | 5 |
Nuclear Periphery | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 1 | 2 | 0 | 0 | 4 | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Nucleolus | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Peroxisomes | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
SpindlePole | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | – | 0 | 2 | 0 | 1 | 0 | 0 | 1 |
Vac/Vac Membrane | 3 | 8 | 5 | 4 | 3 | 5 | 10 | 31 | 28 | 13 | 32 | 31 | 1 | 0 | 0 | 27 | – | 12 | 9 | 11 | 3 | 2 | 5 | 5 |
Unique Cell Count | 549 | 416 | 241 | 253 | 276 | 306 | 332 | 419 | 359 | 349 | 424 | 438 | 256 | 389 | 485 | 79 | 50 | 563 | 409 | 257 | 179 | 390 | 378 | |
Labelled Cell Count | 558 | 427 | 260 | 291 | 289 | 362 | 396 | 504 | 468 | 418 | 550 | 573 | 263 | 393 | 490 | 94 | 58 | 563 | 409 | 257 | 179 | 390 | 378 |
Screen | WT1 | WT2 | WT3 | RAP60 | RAP140 | RAP220 | RAP300 | RAP380 | RAP460 | RAP540 | RAP620 | RAP700 | HU80 | HU120 | HU160 | rpd3Δ_1 | rpd3Δ_2 | rpd3Δ_3 | AF100 | AF140 | AF180 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Mean Cell GFP Intensity (1e-4) | 8.1 | 9.1 | 5.5 | 6.2 | 6.5 | 5.0 | 4.9 | 4.9 | 4.4 | 4.6 | 4.4 | 4.4 | 8.8 | 8.5 | 8.3 | 11.3 | – | 10.7 | 8.9 | 9.4 | 9.6 |
Std Deviation (1e-4) | 1.2 | 1.3 | 1.1 | 1.4 | 1.3 | 1.1 | 1.3 | 1.6 | 1.2 | 0.9 | 1.0 | 0.8 | 1.4 | 1.2 | 1.2 | 2.7 | – | 2.5 | 1.5 | 1.5 | 1.7 |
Intensity Change (Log2) | – | – | – | 0.2 | 0.26 | -0.13 | -0.16 | -0.16 | -0.31 | -0.23 | -0.31 | -0.32 | 0.69 | 0.65 | 0.61 | 1.06 | – | 0.97 | 0.71 | 0.79 | 0.82 |
Localization | RAP60 | RAP140 | RAP220 | RAP300 | RAP380 | RAP460 | RAP540 | RAP620 | RAP700 | HU80 | HU120 | HU160 | rpd3Δ_1 | rpd3Δ_2 | rpd3Δ_3 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Cortical Patches | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | – | 0 |
Bud | -0.7 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | – | 0 |
Bud Neck | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | – | 0 |
Bud Site | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | – | 0 |
Cell Periphery | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | – | 0 |
Cytoplasm | -0.5 | 0.3 | -1.9 | -5.5 | -7.1 | -8.2 | -7.6 | -9.7 | -9.4 | 2.0 | 4.3 | 3.6 | -4.9 | – | -4.6 |
Endoplasmic Reticulum | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | – | 0 |
Endosome | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | – | 0 |
Golgi | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | – | 0 |
Mitochondria | 3.6 | -0.6 | 5.7 | 0 | 8.4 | 0 | 0 | 0 | 0 | -3.5 | -4.8 | 0 | 0 | – | 0 |
Nucleus | 0 | 0 | 0 | 0 | 1.1 | 0 | 0.9 | 0.6 | 1.0 | 0 | 0 | 0 | 0 | – | 0 |
Nuclear Periphery | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | – | 0 |
Nucleolus | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | – | 0 |
Peroxisomes | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | – | 0 |
SpindlePole | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | – | 0 |
Vacuole | 0 | 0 | 0 | 0.7 | 2.9 | 3.0 | 1.1 | 3.0 | 2.8 | 0 | 0 | 0 | 8.3 | – | 0 |
R1 | R2 | R3 | ||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
G1 Pre-START | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | G1 Pre-START | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | G1 Pre-START | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | |
Concentration | 3.7092 | 5.4591 | 4.688 | 4.1523 | 3.5537 | 4.6421 | 3.2137 | 4.3053 | 3.8186 | 3.3488 | 3.1898 | 4.0262 | 4.4246 | 6.9346 | 5.2257 | 5.2467 | 4.6491 | 5.2717 |
Actin | 0.0392 | 0.0005 | 0.028 | 0.0475 | 0.0894 | 0.0163 | 0.0503 | 0.0011 | 0.034 | 0.0617 | 0.0536 | 0.0003 | 0.014 | 0.0005 | 0.0014 | 0.0009 | 0.0003 | 0.0006 |
Bud | 0.0003 | 0.0003 | 0.0009 | 0.0002 | 0.0005 | 0.0001 | 0.0022 | 0.0001 | 0.0022 | 0.0013 | 0.0006 | 0.001 | 0.0002 | 0.0003 | 0.0002 | 0.0002 | 0.0001 | 0.0002 |
Bud Neck | 0.0006 | 0.0002 | 0.0007 | 0.0008 | 0.0046 | 0.0012 | 0.0023 | 0.0001 | 0.0005 | 0.0016 | 0.0011 | 0.0008 | 0.0031 | 0.0005 | 0.0003 | 0.0004 | 0.0004 | 0.0012 |
Bud Periphery | 0.0002 | 0.0001 | 0.0014 | 0.0001 | 0.0005 | 0.0001 | 0.0031 | 0.0001 | 0.0022 | 0.0021 | 0.0006 | 0.0004 | 0.0002 | 0.0001 | 0.0001 | 0 | 0 | 0 |
Bud Site | 0.0008 | 0.0035 | 0.0025 | 0.0032 | 0.002 | 0.0001 | 0.0085 | 0.0004 | 0.0018 | 0.002 | 0.0027 | 0.0001 | 0.0008 | 0.0076 | 0.0003 | 0.0002 | 0.0003 | 0.0001 |
Cell Periphery | 0.0001 | 0 | 0.0002 | 0 | 0.0001 | 0 | 0.0004 | 0.0001 | 0.0001 | 0.0004 | 0 | 0 | 0.0001 | 0.0001 | 0 | 0 | 0.0001 | 0 |
Cytoplasm | 0.8364 | 0.97 | 0.8677 | 0.9144 | 0.7666 | 0.9285 | 0.7416 | 0.9698 | 0.8794 | 0.8196 | 0.8047 | 0.9354 | 0.8844 | 0.95 | 0.9319 | 0.9379 | 0.9281 | 0.938 |
Cytoplasmic Foci | 0.0239 | 0.0021 | 0.0106 | 0.0044 | 0.0232 | 0.0071 | 0.0409 | 0.0024 | 0.0087 | 0.0232 | 0.0071 | 0.0063 | 0.0108 | 0.0045 | 0.0046 | 0.0031 | 0.0035 | 0.0051 |
Eisosomes | 0.0001 | 0 | 0.0002 | 0.0001 | 0.0004 | 0.0001 | 0.0002 | 0 | 0.0001 | 0.0002 | 0.0001 | 0 | 0.0001 | 0 | 0 | 0 | 0 | 0 |
Endoplasmic Reticulum | 0.0047 | 0.0012 | 0.0033 | 0.0011 | 0.0041 | 0.0023 | 0.0126 | 0.001 | 0.003 | 0.0081 | 0.0038 | 0.0031 | 0.008 | 0.0015 | 0.0028 | 0.0013 | 0.0059 | 0.0039 |
Endosome | 0.0108 | 0.0012 | 0.0103 | 0.0009 | 0.0479 | 0.0068 | 0.041 | 0.0007 | 0.0081 | 0.0087 | 0.0382 | 0.0046 | 0.0047 | 0.0014 | 0.0027 | 0.0011 | 0.0019 | 0.0038 |
Golgi | 0.0055 | 0.0001 | 0.0084 | 0.0006 | 0.0119 | 0.002 | 0.012 | 0.0001 | 0.004 | 0.0075 | 0.0141 | 0.0001 | 0.0013 | 0.0002 | 0.0003 | 0.0001 | 0.0001 | 0.0001 |
Lipid Particles | 0.0077 | 0 | 0.0022 | 0.0003 | 0.0081 | 0.0024 | 0.0092 | 0 | 0.0007 | 0.0088 | 0.0021 | 0 | 0.0033 | 0 | 0.0002 | 0 | 0.0001 | 0.0001 |
Mitochondria | 0.0014 | 0.0001 | 0.0108 | 0.0003 | 0.0021 | 0.0006 | 0.0113 | 0.0001 | 0.0085 | 0.0025 | 0.0069 | 0.0002 | 0.0004 | 0.0002 | 0.0002 | 0.0001 | 0.0001 | 0.0002 |
None | 0.0419 | 0.0159 | 0.0356 | 0.0071 | 0.0054 | 0.0089 | 0.0231 | 0.0168 | 0.0212 | 0.0169 | 0.0416 | 0.008 | 0.0404 | 0.0221 | 0.0421 | 0.0446 | 0.0385 | 0.0225 |
Nuclear Periphery | 0.0028 | 0.0007 | 0.0024 | 0.0013 | 0.0143 | 0.0041 | 0.0088 | 0.0007 | 0.0033 | 0.0029 | 0.0037 | 0.003 | 0.0032 | 0.001 | 0.0016 | 0.0014 | 0.004 | 0.002 |
Nucleolus | 0.0001 | 0 | 0.0002 | 0 | 0.0004 | 0.0001 | 0.0004 | 0 | 0.0001 | 0.0001 | 0.0001 | 0 | 0.0002 | 0 | 0 | 0 | 0 | 0 |
Nucleus | 0.0073 | 0.0033 | 0.0074 | 0.0145 | 0.0065 | 0.0141 | 0.0066 | 0.0055 | 0.0082 | 0.0077 | 0.0097 | 0.0343 | 0.0153 | 0.0087 | 0.0097 | 0.007 | 0.0144 | 0.0199 |
Peroxisomes | 0.0122 | 0.0001 | 0.0048 | 0.0021 | 0.0031 | 0.001 | 0.0157 | 0 | 0.0117 | 0.0215 | 0.0052 | 0.0001 | 0.004 | 0.0002 | 0.0002 | 0.0001 | 0 | 0.0001 |
Punctate Nuclear | 0.0027 | 0.0002 | 0.0008 | 0.0008 | 0.0062 | 0.0031 | 0.0034 | 0.0004 | 0.0009 | 0.002 | 0.001 | 0.0009 | 0.0044 | 0.0007 | 0.001 | 0.001 | 0.0009 | 0.0013 |
Vacuole | 0.001 | 0.0005 | 0.0011 | 0.0003 | 0.0019 | 0.0009 | 0.0044 | 0.0004 | 0.0008 | 0.001 | 0.0016 | 0.0011 | 0.0009 | 0.0003 | 0.0004 | 0.0004 | 0.0011 | 0.0008 |
Vacuole Periphery | 0.0002 | 0.0001 | 0.0006 | 0.0001 | 0.0009 | 0.0003 | 0.0022 | 0 | 0.0006 | 0.0003 | 0.0014 | 0.0003 | 0.0002 | 0 | 0.0001 | 0.0001 | 0.0001 | 0.0002 |
R1 | R2 | |||||||||
---|---|---|---|---|---|---|---|---|---|---|
G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | |
Gene Expression | 44.3332 | 38.1634 | 32.6756 | 40.1245 | 38.32 | 62.3604 | 51.944 | 39.0654 | 48.6266 | 55.1707 |
Translational Efficiency | 2.5175 | 2.2792 | 1.8711 | 1.4606 | 2.1828 | 2.1046 | 1.56 | 2.246 | 1.7851 | 1.329 |
Dataset | Hit |
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Protein Concentration | ✘ |
Protein Localization | ✘ |
Gene Expression | ✔ |
Translational Efficiency | ✘ |
Temp | Actin Patch (Sac6-tdTomato) | Cortical Patch (Sla1-GFP) | Late Endosome (Snf7-GFP) | Vacuole (Vph1-GFP) |
---|---|---|---|---|
37℃ | ||||
RT |
Gene / Allele | Actin Patch (Sac6-tdTomato) | Cortical Patch (Sla1-GFP) | Late Endosome (Snf7-GFP) | Vacuole (Sac6-tdTomato) |
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Gene | Images |
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Gene | Images |
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