ORF
Human Ortholog
Description Protein with similarity to ABC transporter family members; lacks predicted membrane-spanning regions; transcriptionally activated by Yrm1p along with genes involved in multidrug resistance
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Micrographs

ensLOC DeepLoc
Localization WT1 WT2 WT3 RAP60 RAP140 RAP220 RAP300 RAP380 RAP460 RAP540 RAP620 RAP700 HU80 HU120 HU160 rpd3Δ_1 rpd3Δ_2 rpd3Δ_3 WT1 WT2 WT3 AF100 AF140 AF180
Cortical Patches 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0.11 0 0 0 0 0 0
Bud 0 0 0 0.05 0 0 0 0 0 0.05 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Bud Neck 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Bud Site 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 – – – – – –
Cell Periphery 0 0.06 0 0 0 0 0 0 0 0 0 0 0 0 0 0.08 0.05 0.11 0 0 0 0 0 0
Cytoplasm 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0.14 0.09 0.08 0 0 0 0 0 0
Endoplasmic Reticulum 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Endosome 0 0 0 0 0.07 0 0 0 0 0 0 0 0 0 0 0.06 0.05 0 0 0 0 0 0.06 0
Golgi 0 0.05 0.08 0 0 0 0 0 0 0 0 0 0.05 0.06 0.13 0.44 0.59 0.51 0 0.08 0.05 0.08 0.09 0.07
Mitochondria 0.9 0.89 0.94 0.92 0.86 0.91 0.88 0.86 0.96 0.94 0.95 0.89 0.92 0.87 0.85 0.06 0.09 0.11 0.83 0.75 0.8 0.74 0.65 0.65
Nucleus 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Nuclear Periphery 0.07 0.06 0.05 0 0.05 0.11 0.11 0.12 0.08 0.1 0.12 0.07 0.05 0 0 0.06 0 0 0 0 0 0 0 0
Nucleolus 0.09 0 0 0 0 0.08 0.08 0.09 0.08 0.08 0.12 0.07 0 0 0 0 0 0 0 0 0 0 0 0
Peroxisomes 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0.05 0.06 0 0 0 0.08 0.06 0.09 0.07
SpindlePole 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Vac/Vac Membrane 0.11 0.13 0.07 0 0.08 0.06 0.06 0 0 0 0.05 0 0.09 0.1 0.09 0.15 0.24 0.24 0 0 0 0 0 0
ensLOC DeepLoc
Localization WT1 WT2 WT3 RAP60 RAP140 RAP220 RAP300 RAP380 RAP460 RAP540 RAP620 RAP700 HU80 HU120 HU160 rpd3Δ_1 rpd3Δ_2 rpd3Δ_3 WT1 WT2 WT3 AF100 AF140 AF180
Cortical Patches 0 0 4 1 0 0 1 0 1 0 0 1 0 1 1 1 1 4 1 3 3 4 5 9
Bud 1 2 0 12 5 7 12 14 10 20 5 3 3 1 1 0 2 0 1 2 0 0 0 1
Bud Neck 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 4
Bud Site 0 1 0 0 0 2 5 7 0 2 1 3 0 0 0 1 0 0 – – – – – –
Cell Periphery 1 14 12 5 4 0 2 3 0 4 0 3 4 6 7 8 5 4 0 1 0 0 0 0
Cytoplasm 6 3 0 6 6 3 9 8 3 3 2 4 5 8 7 14 10 3 0 1 0 3 0 0
Endoplasmic Reticulum 2 3 3 4 0 3 4 2 1 1 1 2 0 2 2 3 3 0 0 0 1 0 0 0
Endosome 1 3 5 5 20 7 9 18 0 1 1 3 3 3 4 6 5 1 5 7 10 3 12 8
Golgi 0 13 24 6 5 0 2 5 2 0 0 1 7 12 29 43 64 19 2 20 15 11 18 14
Mitochondria 126 220 285 232 257 382 475 427 316 362 177 167 138 165 192 6 10 4 110 194 242 107 129 143
Nucleus 2 1 1 1 0 4 5 5 2 1 1 2 1 0 1 3 2 1 0 0 0 0 0 0
Nuclear Periphery 10 14 16 9 16 45 61 58 25 37 23 14 7 5 5 6 1 0 0 1 1 1 2 1
Nucleolus 12 4 5 6 10 32 44 42 25 29 23 13 2 1 4 4 4 1 0 0 0 1 2 2
Peroxisomes 0 6 7 6 13 6 13 7 0 2 2 3 2 4 10 5 7 0 4 11 24 8 17 15
SpindlePole 1 1 0 1 5 3 16 12 0 4 0 2 0 1 0 3 4 0 0 0 0 0 2 0
Vac/Vac Membrane 15 32 20 2 25 26 33 21 9 11 10 7 13 18 20 15 26 9 2 9 2 1 3 9
Unique Cell Count 140 248 302 252 298 419 540 494 328 384 187 187 150 189 227 97 109 37 133 258 304 146 199 220
Labelled Cell Count 177 317 382 296 366 520 691 629 394 478 246 228 185 227 283 118 144 46 133 258 304 146 199 220


Mitochondria

(Huh et al. Nature 2003 425:686)
Screen WT1 WT2 WT3 RAP60 RAP140 RAP220 RAP300 RAP380 RAP460 RAP540 RAP620 RAP700 HU80 HU120 HU160 rpd3Δ_1 rpd3Δ_2 rpd3Δ_3 AF100 AF140 AF180
Mean Cell GFP Intensity (1e-4) 6.5 8.0 7.4 6.7 7.0 6.3 5.7 6.2 6.1 5.4 5.6 5.8 7.4 7.7 7.9 11.0 12.7 13.9 7.9 7.8 8.7
Std Deviation (1e-4) 1.4 1.4 1.3 1.3 1.4 1.1 1.3 1.3 1.2 1.3 1.1 1.7 1.5 1.4 1.4 3.1 2.9 3.1 2.4 2.0 1.7
Intensity Change (Log2) – – – -0.13 -0.08 -0.24 -0.37 -0.24 -0.28 -0.44 -0.39 -0.35 0.0 0.06 0.1 0.57 0.78 0.91 0.1 0.08 0.23


Localization RAP60 RAP140 RAP220 RAP300 RAP380 RAP460 RAP540 RAP620 RAP700 HU80 HU120 HU160 rpd3Δ_1 rpd3Δ_2 rpd3Δ_3
Cortical Patches 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Bud 3.8 0 0 0 3.0 0 4.0 0 0 0 0 0 0 0 0
Bud Neck 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Bud Site 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Cell Periphery -1.4 -2.0 -4.1 -3.9 -3.4 -3.6 -2.5 0 -1.5 -0.7 -0.5 -0.5 0 0 0
Cytoplasm 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Endoplasmic Reticulum 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Endosome 0 3.1 0 0 1.6 0 0 0 0 0 0 0 0 0 0
Golgi -2.9 -3.6 -5.9 -6.1 -5.1 -4.6 -5.6 -4.0 -3.6 -1.3 -0.7 1.8 8.3 11.1 0
Mitochondria -1.1 -3.4 -1.6 -3.0 -3.5 1.2 -0.1 0.1 -2.1 -1.0 -2.8 -3.7 -17.0 -16.9 -13.5
Nucleus 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Nuclear Periphery -1.0 0 2.6 2.9 3.0 1.2 2.1 2.8 1.0 -0.3 -1.4 -1.8 0.3 0 0
Nucleolus 0.6 1.3 3.6 3.9 4.0 3.5 3.5 4.9 3.0 0 0 0 0 0 0
Peroxisomes 0 1.4 -0.9 0.1 -0.9 0 0 0 0 0 0 1.3 0 0 0
SpindlePole 0 0 0 3.0 0 0 0 0 0 0 0 0 0 0 0
Vacuole -3.5 0.8 -0.2 -0.3 -1.5 -2.3 -2.4 -0.6 -1.4 0.8 1.2 0.9 2.7 4.9 0

Images

Circle plot not available

Protein Concentration and Protein Localization Data

R1 R2 R3
G1 Pre-START G1 Post-START S/G2 Metaphase Anaphase Telophase G1 Pre-START G1 Post-START S/G2 Metaphase Anaphase Telophase G1 Pre-START G1 Post-START S/G2 Metaphase Anaphase Telophase
Concentration – – – – – – – – – – – – – – – – – –
Actin 0.0542 0.0276 0.0221 0.0008 0.0011 0.007 0.0562 0.0095 0.0237 0.0016 0.0046 0.0032 0.1132 0.0766 0.0464 0.0007 0.0034 0.0254
Bud 0.0004 0.0016 0.0061 0.0002 0.0002 0.0007 0.001 0.0005 0.0011 0.0002 0.0043 0.0002 0.0003 0.0005 0.0009 0.0001 0.0003 0.0001
Bud Neck 0.0004 0.0004 0.0033 0.0001 0.0002 0.0009 0.0011 0.0003 0.0014 0 0.0003 0.0002 0.0004 0.0006 0.0009 0.0006 0.0001 0.0005
Bud Periphery 0.0009 0.0018 0.0229 0.0005 0.0005 0.003 0.0018 0.0011 0.0014 0.0011 0.0273 0.0004 0.0004 0.0007 0.0031 0.0001 0.0012 0.0003
Bud Site 0.0013 0.0195 0.0117 0.0002 0.0004 0.0004 0.0056 0.003 0.0344 0.0002 0.0009 0.0002 0.0008 0.0017 0.0033 0.0001 0.0002 0.0002
Cell Periphery 0.0003 0.0003 0.0122 0.0001 0.0002 0.0005 0.0008 0.0004 0.0027 0.0003 0.0019 0.0001 0.0002 0.0001 0.0007 0.0002 0.0002 0.0002
Cytoplasm 0.0021 0.001 0.0013 0 0.0001 0.0003 0.0057 0.0003 0.0045 0.0011 0.0005 0.0018 0 0.0006 0.0007 0.0001 0.0001 0.0001
Cytoplasmic Foci 0.0054 0.0138 0.0034 0.001 0.0034 0.0031 0.0604 0.0239 0.0281 0.0027 0.0146 0.0163 0.0017 0.0093 0.0061 0.0272 0.0007 0.0038
Eisosomes 0.0012 0.0005 0.0014 0.0001 0.0001 0.0003 0.0008 0.0005 0.001 0.0003 0.0003 0.0002 0.0017 0.0005 0.0015 0.0001 0.0003 0.0003
Endoplasmic Reticulum 0.0035 0.0007 0.0006 0.0001 0.0002 0.0008 0.0457 0.0002 0.0003 0.0007 0.0001 0.001 0.0001 0.0001 0.0003 0.0001 0.0003 0.0001
Endosome 0.0168 0.024 0.0049 0.0089 0.0231 0.0202 0.1005 0.0088 0.0263 0.0154 0.0084 0.018 0.0036 0.0086 0.0082 0.0066 0.0119 0.0057
Golgi 0.0167 0.0207 0.0101 0.008 0.022 0.0172 0.0596 0.0147 0.0191 0.0037 0.0161 0.032 0.027 0.0393 0.0308 0.0153 0.0168 0.0184
Lipid Particles 0.0169 0.0384 0.011 0.0013 0.0302 0.0096 0.0567 0.0533 0.0136 0.0017 0.0625 0.0311 0.0033 0.0015 0.001 0.0508 0.0022 0.0086
Mitochondria 0.8109 0.798 0.8642 0.9724 0.8947 0.9047 0.5136 0.8559 0.7794 0.959 0.7754 0.8441 0.8396 0.8331 0.8782 0.798 0.9544 0.9203
None 0.0068 0.0002 0.0003 0 0.0001 0.0002 0.0045 0.0001 0.0007 0.0018 0.0004 0.0112 0.0001 0.0001 0.0011 0 0.0001 0.0001
Nuclear Periphery 0.0184 0.0002 0.0006 0.0001 0.0001 0.0017 0.0304 0.0001 0.0001 0.0002 0.0001 0.0003 0 0 0.0001 0 0.0002 0.0001
Nucleolus 0.0008 0.0008 0.0004 0 0.0003 0.0001 0.0006 0.0004 0.0003 0.0001 0.0004 0.0001 0 0 0.0001 0.0002 0.0001 0.0001
Nucleus 0.0045 0.0002 0.0003 0.0001 0.0002 0.0002 0.0028 0.0001 0.0002 0.0002 0.0002 0.0001 0 0 0.0001 0.0001 0.0001 0.0001
Peroxisomes 0.025 0.0453 0.0164 0.0025 0.0154 0.022 0.0349 0.0248 0.0529 0.0056 0.0777 0.0369 0.0065 0.0258 0.0143 0.0968 0.0011 0.013
Punctate Nuclear 0.0062 0.0001 0.0001 0 0.0001 0.0001 0.0095 0.0006 0.0002 0 0.0007 0.0003 0 0.0001 0 0.0002 0 0.0001
Vacuole 0.0029 0.0026 0.0032 0.0012 0.0032 0.0026 0.0039 0.0008 0.0037 0.0023 0.0017 0.0008 0.0002 0.0002 0.0007 0.0011 0.0018 0.0008
Vacuole Periphery 0.0043 0.0024 0.0037 0.0022 0.0042 0.0044 0.004 0.0007 0.0048 0.0018 0.0016 0.0013 0.0006 0.0004 0.0015 0.0018 0.0044 0.0019

Sequencing Data

R1 R2
G1 Post-START S/G2 Metaphase Anaphase Telophase G1 Post-START S/G2 Metaphase Anaphase Telophase
Gene Expression 12.9412 18.2662 18.5242 19.2755 12.8049 21.1028 27.0878 28.878 24.5089 23.8271
Translational Efficiency 0.5351 0.8275 0.5444 0.6254 0.8241 0.5074 0.6944 0.5124 0.6439 0.6135

Hit Data

Dataset Hit
Protein Concentration –
Protein Localization ✘
Gene Expression ✔
Translational Efficiency ✘
ORF
Human Ortholog
Description Protein with similarity to ABC transporter family members; lacks predicted membrane-spanning regions; transcriptionally activated by Yrm1p along with genes involved in multidrug resistance
Localization
Cell Percentages cytoplasm (100%)
Cell Cycle Regulation No
Subcompartmental Group cytoplasm-7

YDR061W

YDR061W


Nearest neighbours ( genes)

correlation threshold

0.6

1.0

0.80


Biological Process (Gene Ontology)
Molecular Function (Gene Ontology)
Cellular Component (Gene Ontology)

Endocytosis
Temp Actin Patch (Sac6-tdTomato) Cortical Patch (Sla1-GFP) Late Endosome (Snf7-GFP) Vacuole (Vph1-GFP)
37℃
RT
Cell Cycle Omics

CYCLoPs (Ydr061w-GFP)
Gene / Allele Actin Patch (Sac6-tdTomato) Cortical Patch (Sla1-GFP) Late Endosome (Snf7-GFP) Vacuole (Sac6-tdTomato)
Gene Images
Gene Images
Images are not yet available
Images are not yet available