Standard name | |
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Human Ortholog | |
Description | Component of the SSU and 90S preribosomes; involved in pre-18S rRNA processing; binds to U3 snoRNA and Mpp10p; multicopy suppressor of sensitivity to Brefeldin A; expression is induced during lag phase and also by cold shock |
ensLOC | DeepLoc | |||||||||||||||||||||||
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Localization | WT1 | WT2 | WT3 | RAP60 | RAP140 | RAP220 | RAP300 | RAP380 | RAP460 | RAP540 | RAP620 | RAP700 | HU80 | HU120 | HU160 | rpd3Δ_1 | rpd3Δ_2 | rpd3Δ_3 | WT1 | WT2 | WT3 | AF100 | AF140 | AF180 |
Cortical Patches | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Bud | 0 | 0 | 0 | 0 | 2 | 3 | 2 | 4 | 3 | 7 | 0 | 2 | 0 | 1 | 0 | 0 | 0 | 1 | 1 | 0 | 1 | 2 | 6 | 4 |
Bud Neck | 1 | 2 | 3 | 5 | 5 | 2 | 2 | 8 | 1 | 2 | 0 | 2 | 10 | 6 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 4 |
Bud Site | 0 | 0 | 2 | 5 | 2 | 8 | 31 | 8 | 13 | 21 | 3 | 10 | 3 | 0 | 0 | 0 | 3 | 0 | – | – | – | – | – | – |
Cell Periphery | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Cytoplasm | 0 | 3 | 7 | 5 | 4 | 6 | 8 | 13 | 4 | 3 | 4 | 4 | 49 | 51 | 61 | 7 | 10 | 11 | 0 | 1 | 0 | 1 | 0 | 0 |
Endoplasmic Reticulum | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 |
Endosome | 1 | 3 | 1 | 2 | 5 | 4 | 6 | 7 | 5 | 5 | 1 | 1 | 4 | 12 | 21 | 1 | 0 | 0 | 2 | 4 | 7 | 1 | 2 | 5 |
Golgi | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 4 | 2 |
Mitochondria | 20 | 8 | 27 | 26 | 48 | 88 | 114 | 110 | 108 | 116 | 10 | 41 | 11 | 10 | 8 | 20 | 10 | 8 | 0 | 0 | 2 | 2 | 4 | 0 |
Nucleus | 50 | 60 | 48 | 19 | 18 | 33 | 42 | 44 | 25 | 28 | 4 | 7 | 35 | 27 | 25 | 31 | 12 | 19 | 30 | 36 | 37 | 9 | 20 | 19 |
Nuclear Periphery | 1 | 0 | 2 | 2 | 1 | 2 | 2 | 3 | 1 | 3 | 0 | 2 | 1 | 0 | 0 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 3 |
Nucleolus | 263 | 211 | 267 | 253 | 324 | 294 | 346 | 406 | 262 | 309 | 40 | 100 | 417 | 446 | 440 | 155 | 82 | 102 | 262 | 180 | 223 | 218 | 266 | 246 |
Peroxisomes | 0 | 1 | 2 | 1 | 0 | 2 | 3 | 3 | 1 | 3 | 0 | 0 | 2 | 16 | 16 | 2 | 0 | 2 | 0 | 0 | 1 | 0 | 0 | 1 |
SpindlePole | 1 | 3 | 31 | 68 | 84 | 65 | 114 | 133 | 62 | 84 | 11 | 27 | 19 | 55 | 54 | 3 | 2 | 1 | 13 | 3 | 30 | 23 | 43 | 32 |
Vac/Vac Membrane | 1 | 0 | 3 | 2 | 1 | 2 | 2 | 3 | 3 | 2 | 0 | 0 | 1 | 0 | 3 | 3 | 2 | 1 | 0 | 5 | 5 | 4 | 4 | 11 |
Unique Cell Count | 292 | 230 | 302 | 277 | 355 | 346 | 424 | 498 | 328 | 373 | 49 | 120 | 492 | 532 | 546 | 178 | 103 | 124 | 316 | 234 | 314 | 269 | 362 | 340 |
Labelled Cell Count | 338 | 291 | 393 | 388 | 494 | 509 | 672 | 742 | 488 | 583 | 73 | 196 | 552 | 625 | 628 | 223 | 122 | 146 | 316 | 234 | 314 | 269 | 362 | 340 |
Screen | WT1 | WT2 | WT3 | RAP60 | RAP140 | RAP220 | RAP300 | RAP380 | RAP460 | RAP540 | RAP620 | RAP700 | HU80 | HU120 | HU160 | rpd3Δ_1 | rpd3Δ_2 | rpd3Δ_3 | AF100 | AF140 | AF180 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Mean Cell GFP Intensity (1e-4) | 19.9 | 16.5 | 10.8 | 9.8 | 8.6 | 7.4 | 5.8 | 6.3 | 6.3 | 5.8 | 5.7 | 5.4 | 15.2 | 14.8 | 13.3 | 19.9 | 22.5 | 24.3 | 14.9 | 14.3 | 15.6 |
Std Deviation (1e-4) | 7.5 | 5.1 | 4.3 | 5.6 | 3.5 | 3.5 | 2.3 | 2.3 | 1.9 | 1.7 | 1.6 | 1.5 | 7.3 | 7.3 | 7.2 | 9.1 | 13.2 | 12.9 | 5.5 | 5.0 | 5.9 |
Intensity Change (Log2) | – | – | – | -0.13 | -0.33 | -0.54 | -0.9 | -0.77 | -0.77 | -0.88 | -0.91 | -0.99 | 0.5 | 0.46 | 0.31 | 0.88 | 1.06 | 1.17 | 0.47 | 0.41 | 0.54 |
Localization | RAP60 | RAP140 | RAP220 | RAP300 | RAP380 | RAP460 | RAP540 | RAP620 | RAP700 | HU80 | HU120 | HU160 | rpd3Δ_1 | rpd3Δ_2 | rpd3Δ_3 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Cortical Patches | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Bud | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Bud Neck | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Bud Site | 0 | 0 | 0 | 4.2 | 0 | 2.7 | 3.5 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Cell Periphery | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Cytoplasm | -0.4 | -1.2 | -0.5 | -0.4 | 0.3 | -1.1 | 0 | 0 | 0 | 4.1 | 4.0 | 4.5 | 1.0 | 0 | 3.1 |
Endoplasmic Reticulum | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Endosome | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 3.1 | 0 | 0 | 0 |
Golgi | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Mitochondria | 0.2 | 1.8 | 5.5 | 6.0 | 4.8 | 7.3 | 7.0 | 2.4 | 6.4 | -4.3 | -4.8 | -5.2 | 0.8 | 0.2 | -0.8 |
Nucleus | -3.4 | -4.6 | -2.4 | -2.4 | -3.0 | -3.2 | -3.4 | -1.4 | -2.8 | -3.9 | -5.2 | -5.6 | 0.4 | -1.0 | -0.1 |
Nuclear Periphery | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Nucleolus | 1.2 | 1.2 | -1.3 | -2.5 | -2.6 | -2.9 | -2.0 | -1.3 | -1.4 | -1.4 | -1.8 | -2.9 | -0.4 | -2.2 | -1.7 |
Peroxisomes | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 2.2 | 2.2 | 0 | 0 | 0 |
SpindlePole | 4.6 | 4.5 | 3.0 | 5.5 | 5.6 | 3.1 | 4.2 | 2.4 | 3.3 | -3.6 | 0 | -0.2 | -3.5 | -2.7 | -3.4 |
Vacuole | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
R1 | R2 | R3 | ||||||||||||||||
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G1 Pre-START | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | G1 Pre-START | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | G1 Pre-START | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | |
Concentration | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – |
Actin | 0 | 0 | 0 | 0.0009 | 0.0323 | 0 | 0.0464 | 0 | 0.0036 | 0.0008 | 0.0022 | 0 | – | – | – | – | – | – |
Bud | 0.0001 | 0.0001 | 0 | 0.0002 | 0.0005 | 0 | 0.0005 | 0 | 0.0002 | 0.0001 | 0.0002 | 0 | – | – | – | – | – | – |
Bud Neck | 0.0002 | 0.0002 | 0.0001 | 0.001 | 0.0016 | 0.0002 | 0.0007 | 0.0001 | 0.0004 | 0.0004 | 0.0028 | 0.0001 | – | – | – | – | – | – |
Bud Periphery | 0.0001 | 0 | 0 | 0.0003 | 0.0009 | 0 | 0.0009 | 0 | 0.0002 | 0.0001 | 0.0004 | 0.0001 | – | – | – | – | – | – |
Bud Site | 0.0004 | 0.0003 | 0.0008 | 0.0009 | 0.001 | 0 | 0.0017 | 0.0001 | 0.003 | 0.0006 | 0.0015 | 0.0002 | – | – | – | – | – | – |
Cell Periphery | 0.0005 | 0.0001 | 0.0002 | 0.0004 | 0.0001 | 0.0001 | 0.0003 | 0.0001 | 0.0003 | 0.0002 | 0.0005 | 0.0001 | – | – | – | – | – | – |
Cytoplasm | 0.0001 | 0 | 0 | 0.0001 | 0.0254 | 0 | 0.0086 | 0 | 0.0013 | 0 | 0.0001 | 0 | – | – | – | – | – | – |
Cytoplasmic Foci | 0.0007 | 0.0001 | 0.0003 | 0.0054 | 0.0691 | 0.0001 | 0.0222 | 0.0004 | 0.0177 | 0.0087 | 0.0069 | 0.0002 | – | – | – | – | – | – |
Eisosomes | 0 | 0 | 0 | 0.0001 | 0.0005 | 0 | 0.0002 | 0 | 0.0001 | 0.0001 | 0.0001 | 0 | – | – | – | – | – | – |
Endoplasmic Reticulum | 0 | 0 | 0 | 0.0002 | 0.0005 | 0 | 0.0038 | 0 | 0.0003 | 0 | 0.0001 | 0 | – | – | – | – | – | – |
Endosome | 0.0001 | 0 | 0 | 0.0179 | 0.0174 | 0 | 0.0445 | 0 | 0.0084 | 0.0024 | 0.004 | 0 | – | – | – | – | – | – |
Golgi | 0.0001 | 0 | 0 | 0.0108 | 0.0096 | 0 | 0.0214 | 0 | 0.0027 | 0.003 | 0.0074 | 0 | – | – | – | – | – | – |
Lipid Particles | 0.0005 | 0.0001 | 0.0003 | 0.0532 | 0.0279 | 0.0003 | 0.0687 | 0.0014 | 0.0154 | 0.0802 | 0.0316 | 0.0008 | – | – | – | – | – | – |
Mitochondria | 0.0006 | 0.0002 | 0.0003 | 0.0071 | 0.0234 | 0.0001 | 0.0153 | 0.0004 | 0.0067 | 0.0095 | 0.0197 | 0.0018 | – | – | – | – | – | – |
None | 0.0001 | 0 | 0 | 0.0001 | 0.0007 | 0 | 0.0076 | 0 | 0.0009 | 0.0002 | 0.0002 | 0 | – | – | – | – | – | – |
Nuclear Periphery | 0.0005 | 0.0001 | 0 | 0.0005 | 0.0114 | 0 | 0.0419 | 0 | 0.0015 | 0.0002 | 0.0015 | 0 | – | – | – | – | – | – |
Nucleolus | 0.7948 | 0.8013 | 0.9392 | 0.8321 | 0.6533 | 0.9444 | 0.5187 | 0.8943 | 0.8684 | 0.8316 | 0.8234 | 0.9145 | – | – | – | – | – | – |
Nucleus | 0.1793 | 0.1968 | 0.0581 | 0.0589 | 0.0532 | 0.0542 | 0.1514 | 0.1022 | 0.0475 | 0.0447 | 0.0639 | 0.0812 | – | – | – | – | – | – |
Peroxisomes | 0 | 0 | 0.0001 | 0.0027 | 0.0052 | 0 | 0.0101 | 0.0001 | 0.0056 | 0.0138 | 0.0053 | 0.0002 | – | – | – | – | – | – |
Punctate Nuclear | 0.021 | 0.0005 | 0.0002 | 0.0009 | 0.0608 | 0.0004 | 0.0286 | 0.0004 | 0.0136 | 0.0026 | 0.0239 | 0.0005 | – | – | – | – | – | – |
Vacuole | 0.0006 | 0.0001 | 0.0003 | 0.0042 | 0.0032 | 0.0001 | 0.0031 | 0.0003 | 0.0011 | 0.0005 | 0.0011 | 0.0001 | – | – | – | – | – | – |
Vacuole Periphery | 0.0003 | 0.0001 | 0 | 0.002 | 0.0018 | 0 | 0.0035 | 0.0001 | 0.001 | 0.0003 | 0.0031 | 0.0001 | – | – | – | – | – | – |
R1 | R2 | |||||||||
---|---|---|---|---|---|---|---|---|---|---|
G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | |
Gene Expression | 42.9675 | 33.8011 | 26.906 | 29.9864 | 46.35 | 22.6743 | 25.3215 | 25.1636 | 20.9069 | 33.6989 |
Translational Efficiency | 2.8437 | 3.2473 | 2.954 | 2.4412 | 2.0643 | 3.0814 | 1.8502 | 1.5494 | 1.7583 | 2.1461 |
Dataset | Hit |
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Protein Concentration | – |
Protein Localization | ✘ |
Gene Expression | ✘ |
Translational Efficiency | ✘ |
Temp | Actin Patch (Sac6-tdTomato) | Cortical Patch (Sla1-GFP) | Late Endosome (Snf7-GFP) | Vacuole (Vph1-GFP) |
---|---|---|---|---|
37℃ | ||||
RT |
Gene / Allele | Actin Patch (Sac6-tdTomato) | Cortical Patch (Sla1-GFP) | Late Endosome (Snf7-GFP) | Vacuole (Sac6-tdTomato) |
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Gene | Images |
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Gene | Images |
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