Standard name | |
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Human Ortholog | |
Description | Swi2/Snf2-related ATPase; structural component of the SWR1 complex, which exchanges histone variant H2AZ (Htz1p) for chromatin-bound histone H2A; relocalizes to the cytosol in response to hypoxia; chronological aging factor that mediates lifespan extension by dietary restriction |
ensLOC | DeepLoc | |||||||||||||||||||||||
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Localization | WT1 | WT2 | WT3 | RAP60 | RAP140 | RAP220 | RAP300 | RAP380 | RAP460 | RAP540 | RAP620 | RAP700 | HU80 | HU120 | HU160 | rpd3Δ_1 | rpd3Δ_2 | rpd3Δ_3 | WT1 | WT2 | WT3 | AF100 | AF140 | AF180 |
Cortical Patches | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | – | 0 | 0 | 0 | 0 | 0 | – | – | 0 | 0 | 1 | 0 | 0 | 0 | 1 |
Bud | 0 | 0 | 0 | 1 | 2 | 2 | 6 | 12 | 4 | – | 6 | 9 | 0 | 0 | 5 | – | – | 1 | 0 | 5 | 0 | 2 | 6 | 7 |
Bud Neck | 1 | 0 | 1 | 0 | 1 | 0 | 2 | 1 | 1 | – | 2 | 0 | 0 | 0 | 0 | – | – | 0 | 1 | 2 | 3 | 1 | 1 | 3 |
Bud Site | 6 | 0 | 0 | 4 | 4 | 7 | 17 | 12 | 8 | – | 17 | 10 | 0 | 0 | 3 | – | – | 0 | – | – | – | – | – | – |
Cell Periphery | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | – | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Cytoplasm | 2 | 30 | 9 | 13 | 16 | 20 | 37 | 40 | 20 | – | 15 | 19 | 16 | 45 | 52 | – | – | 5 | 1 | 7 | 3 | 1 | 16 | 6 |
Endoplasmic Reticulum | 0 | 2 | 1 | 0 | 0 | 0 | 1 | 0 | 0 | – | 0 | 0 | 0 | 1 | 0 | – | – | 1 | 0 | 1 | 0 | 2 | 0 | 1 |
Endosome | 0 | 2 | 0 | 1 | 4 | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 1 | 0 | – | – | 2 | 10 | 11 | 4 | 2 | 2 | 7 |
Golgi | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | – | – | 0 | 1 | 3 | 0 | 0 | 0 | 2 |
Mitochondria | 6 | 107 | 93 | 86 | 92 | 165 | 268 | 304 | 139 | – | 242 | 227 | 18 | 8 | 68 | – | – | 2 | 2 | 8 | 9 | 1 | 7 | 7 |
Nucleus | 167 | 228 | 97 | 84 | 165 | 132 | 192 | 182 | 79 | – | 132 | 123 | 122 | 211 | 218 | – | – | 10 | 119 | 243 | 90 | 107 | 152 | 143 |
Nuclear Periphery | 0 | 2 | 0 | 0 | 1 | 0 | 2 | 1 | 0 | – | 1 | 0 | 0 | 0 | 0 | – | – | 0 | 1 | 2 | 0 | 0 | 0 | 2 |
Nucleolus | 15 | 11 | 1 | 1 | 7 | 3 | 5 | 8 | 4 | – | 4 | 10 | 4 | 8 | 15 | – | – | 1 | 40 | 30 | 17 | 20 | 29 | 54 |
Peroxisomes | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | – | – | 0 | 0 | 0 | 0 | 0 | 0 | 1 |
SpindlePole | 4 | 2 | 9 | 9 | 10 | 3 | 16 | 10 | 3 | – | 4 | 4 | 2 | 5 | 1 | – | – | 1 | 7 | 10 | 7 | 7 | 11 | 25 |
Vac/Vac Membrane | 1 | 12 | 0 | 1 | 2 | 4 | 1 | 5 | 2 | – | 2 | 8 | 3 | 9 | 8 | – | – | 2 | 24 | 53 | 24 | 15 | 39 | 37 |
Unique Cell Count | 182 | 331 | 159 | 131 | 233 | 232 | 381 | 408 | 185 | 282 | 269 | 148 | 270 | 307 | 17 | 215 | 386 | 168 | 166 | 272 | 308 | |||
Labelled Cell Count | 202 | 397 | 211 | 200 | 304 | 336 | 547 | 576 | 260 | 425 | 410 | 165 | 288 | 370 | 25 | 215 | 386 | 168 | 166 | 272 | 308 |
Screen | WT1 | WT2 | WT3 | RAP60 | RAP140 | RAP220 | RAP300 | RAP380 | RAP460 | RAP540 | RAP620 | RAP700 | HU80 | HU120 | HU160 | rpd3Δ_1 | rpd3Δ_2 | rpd3Δ_3 | AF100 | AF140 | AF180 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Mean Cell GFP Intensity (1e-4) | 4.9 | 4.1 | 3.5 | 3.7 | 3.8 | 3.3 | 3.2 | 3.1 | 2.8 | – | 2.8 | 2.6 | 4.9 | 5.1 | 4.2 | – | – | 6.3 | 4.9 | 4.2 | 5.0 |
Std Deviation (1e-4) | 0.8 | 1.0 | 1.0 | 1.8 | 1.6 | 1.1 | 1.2 | 1.0 | 0.9 | – | 0.9 | 0.9 | 1.1 | 1.2 | 0.9 | – | – | 2.1 | 1.5 | 1.0 | 1.3 |
Intensity Change (Log2) | – | – | – | 0.09 | 0.13 | -0.1 | -0.13 | -0.16 | -0.34 | – | -0.31 | -0.41 | 0.48 | 0.54 | 0.27 | – | – | 0.83 | 0.47 | 0.27 | 0.52 |
Localization | RAP60 | RAP140 | RAP220 | RAP300 | RAP380 | RAP460 | RAP540 | RAP620 | RAP700 | HU80 | HU120 | HU160 | rpd3Δ_1 | rpd3Δ_2 | rpd3Δ_3 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Actin | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – |
Bud | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – |
Bud Neck | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – |
Bud Site | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – |
Cell Periphery | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – |
Cyto | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – |
Endoplasmic Reticulum | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – |
Endosome | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – |
Golgi | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – |
Mitochondria | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – |
Nuclear Periphery | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – |
Nuc | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – |
Nucleolus | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – |
Peroxisomes | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – |
SpindlePole | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – |
Vac | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – |
Cortical Patches | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – |
Cytoplasm | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – |
Nucleus | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – |
Vacuole | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – |
R1 | R2 | R3 | ||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
G1 Pre-START | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | G1 Pre-START | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | G1 Pre-START | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | |
Concentration | 3.1327 | 3.5325 | 3.3612 | 2.7862 | 3.3623 | 3.3349 | 1.4143 | 2.6574 | 2.3678 | 1.9886 | 1.819 | 2.5647 | 2.0331 | 2.4952 | 1.6238 | 1.7792 | 1.7317 | 1.6232 |
Actin | 0.0126 | 0 | 0.0009 | 0.0041 | 0.0079 | 0.0009 | 0.0038 | 0.0001 | 0.0142 | 0.0002 | 0.0013 | 0.0003 | 0.0113 | 0.001 | 0.0066 | 0.0288 | 0.0025 | 0.0001 |
Bud | 0.0004 | 0.0003 | 0.0001 | 0.0001 | 0.0009 | 0.0001 | 0.0006 | 0.0009 | 0.0006 | 0.0004 | 0.0012 | 0.0003 | 0.0001 | 0.0001 | 0.0001 | 0.0001 | 0.0022 | 0 |
Bud Neck | 0.0014 | 0.0005 | 0.0004 | 0.0004 | 0.0059 | 0.0035 | 0.0025 | 0.0009 | 0.0002 | 0.0005 | 0.003 | 0.0075 | 0.0003 | 0.0001 | 0.0003 | 0.0005 | 0.0038 | 0.0018 |
Bud Periphery | 0.0009 | 0.0002 | 0.0003 | 0.0001 | 0.0044 | 0.0002 | 0.0014 | 0.0002 | 0.0006 | 0.001 | 0.0047 | 0.0011 | 0.0001 | 0.0001 | 0.0001 | 0.0001 | 0.0092 | 0 |
Bud Site | 0.002 | 0.0016 | 0.0013 | 0.0005 | 0.0024 | 0.0005 | 0.0012 | 0.0012 | 0.0093 | 0.0009 | 0.0014 | 0.0006 | 0.0006 | 0.0005 | 0.0011 | 0.0006 | 0.0045 | 0.0001 |
Cell Periphery | 0.0004 | 0 | 0.0003 | 0.0001 | 0.0021 | 0 | 0.0005 | 0.0001 | 0.0001 | 0.0001 | 0.0005 | 0.0001 | 0.0001 | 0.0001 | 0.0001 | 0 | 0.0017 | 0 |
Cytoplasm | 0.0019 | 0.0004 | 0.0105 | 0.0083 | 0.0039 | 0.0002 | 0.0157 | 0.0036 | 0.0006 | 0.0004 | 0.0009 | 0.0005 | 0.0078 | 0.0013 | 0.0065 | 0.0035 | 0.005 | 0.0003 |
Cytoplasmic Foci | 0.002 | 0 | 0.0003 | 0.0102 | 0.0006 | 0.0021 | 0.0185 | 0.0159 | 0.0105 | 0.0014 | 0.0002 | 0.0002 | 0.0083 | 0.0025 | 0.0132 | 0.0118 | 0.0078 | 0 |
Eisosomes | 0.0002 | 0 | 0.0001 | 0 | 0.0005 | 0 | 0 | 0 | 0.0001 | 0 | 0.0001 | 0 | 0.0001 | 0 | 0.0002 | 0.0001 | 0.0001 | 0.0003 |
Endoplasmic Reticulum | 0.0051 | 0 | 0.001 | 0.0022 | 0.005 | 0 | 0.0023 | 0.0003 | 0.0003 | 0.0001 | 0.0006 | 0.0001 | 0.0022 | 0.0041 | 0.0012 | 0.0002 | 0.0011 | 0 |
Endosome | 0.01 | 0.0001 | 0.0032 | 0.0288 | 0.0079 | 0.0009 | 0.0116 | 0.0011 | 0.0045 | 0.0041 | 0.0023 | 0.0004 | 0.0185 | 0.0193 | 0.0079 | 0.0032 | 0.0133 | 0.0001 |
Golgi | 0.0045 | 0 | 0.0011 | 0.0041 | 0.0019 | 0.0008 | 0.0012 | 0.0004 | 0.0055 | 0.0014 | 0.0003 | 0.0002 | 0.0035 | 0.0028 | 0.0043 | 0.0092 | 0.0087 | 0 |
Lipid Particles | 0.0055 | 0 | 0.0007 | 0.0183 | 0.005 | 0.0005 | 0.0013 | 0.0023 | 0.0024 | 0.0022 | 0.0004 | 0.0011 | 0.0136 | 0.0109 | 0.011 | 0.0005 | 0.0242 | 0.0001 |
Mitochondria | 0.0162 | 0.0002 | 0.0036 | 0.0009 | 0.0444 | 0.0004 | 0.003 | 0.0006 | 0.0048 | 0.0053 | 0.0064 | 0.0011 | 0.0009 | 0.0036 | 0.0015 | 0.0038 | 0.0103 | 0.0001 |
None | 0.0026 | 0.0007 | 0.0018 | 0.0048 | 0.0014 | 0.0001 | 0.004 | 0.003 | 0.0003 | 0.0003 | 0.0006 | 0.0002 | 0.0256 | 0.0004 | 0.0384 | 0.005 | 0.0011 | 0.0053 |
Nuclear Periphery | 0.0059 | 0.0013 | 0.0022 | 0.0038 | 0.0336 | 0.0004 | 0.0116 | 0.0021 | 0.0009 | 0.0027 | 0.019 | 0.0047 | 0.0409 | 0.0058 | 0.0081 | 0.0044 | 0.0041 | 0.0008 |
Nucleolus | 0.0408 | 0.0545 | 0.0372 | 0.0337 | 0.0521 | 0.0779 | 0.0542 | 0.0285 | 0.0252 | 0.0305 | 0.0608 | 0.086 | 0.0224 | 0.0218 | 0.0173 | 0.0194 | 0.0586 | 0.0542 |
Nucleus | 0.8692 | 0.9364 | 0.9301 | 0.8251 | 0.7905 | 0.8863 | 0.8248 | 0.9178 | 0.9133 | 0.9412 | 0.8822 | 0.8844 | 0.8197 | 0.9206 | 0.8646 | 0.8927 | 0.7962 | 0.9274 |
Peroxisomes | 0.0032 | 0 | 0.0001 | 0.0198 | 0.0013 | 0.0023 | 0.0196 | 0.0039 | 0.0048 | 0.0022 | 0.0002 | 0.0008 | 0.0088 | 0.0008 | 0.0056 | 0.011 | 0.01 | 0 |
Punctate Nuclear | 0.008 | 0.0035 | 0.004 | 0.0325 | 0.0072 | 0.0228 | 0.0117 | 0.0167 | 0.0016 | 0.003 | 0.0068 | 0.0094 | 0.0116 | 0.0024 | 0.0114 | 0.0051 | 0.0188 | 0.0093 |
Vacuole | 0.0046 | 0.0003 | 0.0006 | 0.0017 | 0.0154 | 0.0002 | 0.0085 | 0.0004 | 0.0002 | 0.0013 | 0.0047 | 0.0009 | 0.0017 | 0.0012 | 0.0005 | 0.0001 | 0.0148 | 0.0001 |
Vacuole Periphery | 0.0026 | 0 | 0.0003 | 0.0006 | 0.0055 | 0 | 0.0021 | 0.0001 | 0.0001 | 0.0009 | 0.0025 | 0.0002 | 0.0018 | 0.0007 | 0.0002 | 0.0001 | 0.0022 | 0 |
R1 | R2 | |||||||||
---|---|---|---|---|---|---|---|---|---|---|
G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | |
Gene Expression | 19.6646 | 17.796 | 24.6394 | 24.8864 | 18.5712 | 22.8081 | 25.6188 | 29.1022 | 29.1453 | 23.0907 |
Translational Efficiency | 0.3264 | 0.3388 | 0.2344 | 0.256 | 0.2067 | 0.2859 | 0.2767 | 0.2124 | 0.1963 | 0.2284 |
Dataset | Hit |
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Protein Concentration | ✘ |
Protein Localization | ✘ |
Gene Expression | ✔ |
Translational Efficiency | ✘ |
Temp | Actin Patch (Sac6-tdTomato) | Cortical Patch (Sla1-GFP) | Late Endosome (Snf7-GFP) | Vacuole (Vph1-GFP) |
---|---|---|---|---|
37℃ | ||||
RT |
Gene / Allele | Actin Patch (Sac6-tdTomato) | Cortical Patch (Sla1-GFP) | Late Endosome (Snf7-GFP) | Vacuole (Sac6-tdTomato) |
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Gene | Images |
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Gene | Images |
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