Standard name | |
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Human Ortholog | |
Description | Vacuolar membrane protein; vacuole-specific Myo2p receptor and Myo2p-Vac17p-Vac8p transport complex subunit required for vacuolar inheritance; required with Atg13p for the vesicle closure step of the cytoplasm-to-vacuole (CVT) pathway, for homotypic vacuole-vacuole fusion and for nucleus-vacuole junction formation with Nvy1p; contains 11 armadillo (ARM) repeats; myristoylated, palmitoylated, and phosphorylated |
ensLOC | DeepLoc | |||||||||||||||||||||||
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Localization | WT1 | WT2 | WT3 | RAP60 | RAP140 | RAP220 | RAP300 | RAP380 | RAP460 | RAP540 | RAP620 | RAP700 | HU80 | HU120 | HU160 | rpd3Δ_1 | rpd3Δ_2 | rpd3Δ_3 | WT1 | WT2 | WT3 | AF100 | AF140 | AF180 |
Cortical Patches | 1 | 0 | 0 | 0 | 0 | 0 | 1 | 7 | – | 3 | 6 | 3 | 1 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 |
Bud | 0 | 0 | 2 | 0 | 1 | 1 | 1 | 4 | – | 1 | 0 | 4 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 1 | 0 | 1 | 6 |
Bud Neck | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Bud Site | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | – | – | – | – | – | – |
Cell Periphery | 1 | 0 | 0 | 0 | 0 | 0 | 1 | 4 | – | 2 | 4 | 2 | 0 | 0 | 2 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 |
Cytoplasm | 3 | 0 | 12 | 8 | 15 | 10 | 19 | 29 | – | 31 | 39 | 29 | 9 | 13 | 17 | 19 | 12 | 11 | 0 | 0 | 0 | 0 | 0 | 1 |
Endoplasmic Reticulum | 0 | 0 | 2 | 0 | 0 | 7 | 12 | 16 | – | 25 | 10 | 17 | 1 | 4 | 0 | 11 | 1 | 11 | 0 | 0 | 0 | 0 | 1 | 1 |
Endosome | 14 | 1 | 30 | 49 | 33 | 18 | 19 | 44 | – | 19 | 11 | 30 | 76 | 45 | 49 | 23 | 19 | 13 | 25 | 10 | 92 | 16 | 22 | 27 |
Golgi | 12 | 4 | 14 | 11 | 47 | 49 | 93 | 86 | – | 63 | 24 | 66 | 44 | 53 | 71 | 17 | 12 | 24 | 1 | 1 | 3 | 0 | 3 | 1 |
Mitochondria | 26 | 15 | 109 | 103 | 36 | 95 | 105 | 180 | – | 157 | 123 | 123 | 27 | 11 | 10 | 14 | 12 | 9 | 6 | 1 | 24 | 6 | 4 | 4 |
Nucleus | 9 | 4 | 1 | 1 | 3 | 8 | 4 | 4 | – | 2 | 4 | 1 | 9 | 20 | 23 | 14 | 11 | 2 | 3 | 4 | 1 | 9 | 10 | 16 |
Nuclear Periphery | 11 | 4 | 13 | 11 | 7 | 17 | 19 | 22 | – | 8 | 8 | 7 | 30 | 16 | 12 | 20 | 20 | 21 | 10 | 1 | 42 | 8 | 15 | 9 |
Nucleolus | 74 | 23 | 159 | 113 | 59 | 64 | 51 | 87 | – | 58 | 47 | 40 | 289 | 219 | 296 | 62 | 39 | 56 | 13 | 5 | 8 | 9 | 13 | 23 |
Peroxisomes | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
SpindlePole | 0 | 0 | 0 | 1 | 1 | 0 | 0 | 0 | – | 0 | 0 | 0 | 11 | 3 | 4 | 5 | 4 | 2 | 1 | 0 | 3 | 2 | 0 | 0 |
Vac/Vac Membrane | 179 | 71 | 218 | 128 | 189 | 227 | 244 | 240 | – | 196 | 171 | 243 | 581 | 707 | 868 | 208 | 107 | 153 | 199 | 90 | 201 | 206 | 285 | 294 |
Unique Cell Count | 244 | 90 | 365 | 275 | 272 | 364 | 428 | 558 | 419 | 350 | 435 | 830 | 876 | 1063 | 287 | 154 | 199 | 263 | 117 | 385 | 263 | 361 | 388 | |
Labelled Cell Count | 330 | 122 | 560 | 425 | 391 | 496 | 569 | 723 | 565 | 447 | 565 | 1078 | 1091 | 1352 | 394 | 237 | 303 | 263 | 117 | 385 | 263 | 361 | 388 |
Screen | WT1 | WT2 | WT3 | RAP60 | RAP140 | RAP220 | RAP300 | RAP380 | RAP460 | RAP540 | RAP620 | RAP700 | HU80 | HU120 | HU160 | rpd3Δ_1 | rpd3Δ_2 | rpd3Δ_3 | AF100 | AF140 | AF180 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Mean Cell GFP Intensity (1e-4) | 21.9 | 24.6 | 22.3 | 20.2 | 20.7 | 18.1 | 17.6 | 17.3 | – | 16.4 | 16.0 | 17.5 | 21.4 | 24.0 | 25.9 | 14.9 | 15.2 | 21.7 | 24.2 | 26.4 | 27.8 |
Std Deviation (1e-4) | 5.5 | 7.2 | 6.0 | 5.2 | 5.7 | 5.0 | 4.6 | 4.6 | – | 3.9 | 3.8 | 4.3 | 6.0 | 6.4 | 6.4 | 5.3 | 6.7 | 8.2 | 7.1 | 8.4 | 8.6 |
Intensity Change (Log2) | – | – | – | -0.14 | -0.11 | -0.3 | -0.34 | -0.37 | – | -0.44 | -0.47 | -0.35 | -0.06 | 0.11 | 0.22 | -0.58 | -0.55 | -0.04 | 0.12 | 0.24 | 0.32 |
Localization | RAP60 | RAP140 | RAP220 | RAP300 | RAP380 | RAP460 | RAP540 | RAP620 | RAP700 | HU80 | HU120 | HU160 | rpd3Δ_1 | rpd3Δ_2 | rpd3Δ_3 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Cortical Patches | 0 | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Bud | 0 | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Bud Neck | 0 | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Bud Site | 0 | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Cell Periphery | 0 | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Cytoplasm | -0.3 | 1.4 | -0.4 | 0.8 | 1.4 | – | 2.5 | 4.1 | 2.2 | -2.7 | -2.1 | -2.0 | 2.0 | 2.2 | 1.3 |
Endoplasmic Reticulum | 0 | 0 | 0 | 2.4 | 2.5 | – | 4.2 | 2.4 | 3.1 | 0 | 0 | 0 | 3.0 | 0 | 0 |
Endosome | 3.7 | 1.6 | -1.8 | -2.2 | -0.2 | – | -2.1 | -2.9 | -0.7 | 0.5 | -2.1 | -2.6 | -0.1 | 1.5 | -0.7 |
Golgi | 0.1 | 5.7 | 4.6 | 7.4 | 5.5 | – | 5.3 | 1.8 | 5.3 | 1.1 | 1.6 | 2.0 | 1.2 | 1.9 | 3.7 |
Mitochondria | 2.0 | -5.0 | -1.1 | -1.7 | 0.8 | – | 2.2 | 1.5 | -0.5 | -13.3 | -15.5 | -17.2 | -8.1 | -5.4 | -7.1 |
Nucleus | 0 | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 2.5 | 2.4 | 3.9 | 0 | 0 |
Nuclear Periphery | 0.3 | -0.7 | 0.8 | 0.6 | 0.3 | – | -1.4 | -1.0 | -1.8 | 0 | -1.8 | -3.1 | 2.0 | 4.0 | 3.3 |
Nucleolus | -0.6 | -5.8 | -7.6 | -10.1 | -9.4 | – | -9.3 | -8.9 | -11.2 | -2.9 | -6.5 | -5.6 | -5.9 | -3.9 | -3.6 |
Peroxisomes | 0 | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
SpindlePole | 0 | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Vacuole | -3.3 | 2.5 | 0.7 | -0.8 | -5.0 | – | -3.6 | -2.9 | -1.1 | 3.5 | 7.7 | 8.5 | 3.4 | 2.1 | 4.1 |
R1 | R2 | R3 | ||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
G1 Pre-START | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | G1 Pre-START | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | G1 Pre-START | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | |
Concentration | 14.5519 | 20.4514 | 18.5575 | 16.7711 | 17.2692 | 18.5163 | 18.5766 | 21.0952 | 18.9966 | 20.2168 | 19.9982 | 19.4878 | 18.4812 | 23.1801 | 21.4737 | 19.7743 | 19.2333 | 21.0324 |
Actin | 0.0026 | 0 | 0.0165 | 0.0015 | 0.0212 | 0 | 0.0154 | 0 | 0.0044 | 0 | 0 | 0.0083 | 0.0068 | 0 | 0.0012 | 0.0001 | 0 | 0.0004 |
Bud | 0.0003 | 0 | 0.0002 | 0.0003 | 0.0001 | 0 | 0.0001 | 0 | 0.0001 | 0 | 0 | 0.0001 | 0.0001 | 0 | 0 | 0 | 0 | 0 |
Bud Neck | 0.0002 | 0 | 0.0009 | 0.0002 | 0.0001 | 0 | 0.0002 | 0.0001 | 0.0017 | 0 | 0 | 0.0003 | 0.0019 | 0 | 0.0001 | 0 | 0 | 0 |
Bud Periphery | 0.0005 | 0.0001 | 0.0003 | 0.0006 | 0.0002 | 0.0002 | 0.0001 | 0.0001 | 0.0002 | 0 | 0 | 0.0002 | 0.0003 | 0.0001 | 0.0001 | 0 | 0.0001 | 0.0001 |
Bud Site | 0.0007 | 0 | 0.008 | 0.0015 | 0.0001 | 0 | 0.0001 | 0.0001 | 0.0002 | 0 | 0 | 0.0003 | 0.0021 | 0 | 0.0001 | 0 | 0 | 0 |
Cell Periphery | 0.0032 | 0.0031 | 0.0016 | 0.0013 | 0.0008 | 0.0013 | 0.0016 | 0.0025 | 0.0019 | 0.0007 | 0.0003 | 0.0012 | 0.0021 | 0.0011 | 0.0014 | 0.0023 | 0.001 | 0.0017 |
Cytoplasm | 0.0096 | 0.0002 | 0.0042 | 0.0005 | 0.0006 | 0.0001 | 0.0004 | 0.0001 | 0.0007 | 0 | 0 | 0.0002 | 0.0016 | 0 | 0.0004 | 0 | 0 | 0.0005 |
Cytoplasmic Foci | 0.0074 | 0.0006 | 0.0106 | 0.0018 | 0.0008 | 0.0137 | 0.0063 | 0.0017 | 0.0104 | 0.0008 | 0.0005 | 0.0065 | 0.0062 | 0.0009 | 0.0083 | 0.0002 | 0.0002 | 0.0017 |
Eisosomes | 0.0001 | 0 | 0.0001 | 0.0001 | 0.0001 | 0 | 0.0002 | 0 | 0.0002 | 0 | 0 | 0 | 0.0002 | 0 | 0 | 0 | 0 | 0 |
Endoplasmic Reticulum | 0.0028 | 0.0001 | 0.0006 | 0.0007 | 0.0023 | 0.0001 | 0.008 | 0.0001 | 0.0009 | 0 | 0.0001 | 0.0003 | 0.0022 | 0.0001 | 0.0001 | 0 | 0.0001 | 0.0001 |
Endosome | 0.0195 | 0.0042 | 0.0147 | 0.0063 | 0.0189 | 0.0035 | 0.0177 | 0.0066 | 0.0121 | 0.006 | 0.0059 | 0.0087 | 0.0188 | 0.0058 | 0.0077 | 0.0028 | 0.0057 | 0.0054 |
Golgi | 0.003 | 0.0003 | 0.0057 | 0.001 | 0.0028 | 0.0005 | 0.0128 | 0.0014 | 0.0094 | 0.001 | 0.0013 | 0.0064 | 0.0041 | 0.0012 | 0.0025 | 0.0004 | 0.0006 | 0.0015 |
Lipid Particles | 0.0429 | 0.018 | 0.0283 | 0.0144 | 0.006 | 0.0288 | 0.23 | 0.0819 | 0.0774 | 0.0704 | 0.0561 | 0.1554 | 0.0923 | 0.0563 | 0.0679 | 0.0337 | 0.0253 | 0.1094 |
Mitochondria | 0.0151 | 0.0014 | 0.009 | 0.0071 | 0.0015 | 0.0034 | 0.0241 | 0.0089 | 0.0467 | 0.0016 | 0.0023 | 0.0157 | 0.0314 | 0.0022 | 0.031 | 0.0616 | 0.0014 | 0.0039 |
None | 0.0025 | 0.0001 | 0.0009 | 0.0006 | 0.0008 | 0 | 0.0003 | 0 | 0.0041 | 0 | 0 | 0.0002 | 0.0049 | 0 | 0.003 | 0 | 0 | 0.0006 |
Nuclear Periphery | 0.0409 | 0.0108 | 0.0131 | 0.0063 | 0.0209 | 0.0067 | 0.0083 | 0.0219 | 0.0047 | 0.0014 | 0.004 | 0.0137 | 0.0134 | 0.0333 | 0.0102 | 0.0006 | 0.0139 | 0.0149 |
Nucleolus | 0.0221 | 0.0261 | 0.0224 | 0.0109 | 0.0021 | 0.0256 | 0.019 | 0.0248 | 0.0155 | 0.0033 | 0.0013 | 0.0088 | 0.0435 | 0.0072 | 0.0147 | 0.0081 | 0.0021 | 0.0309 |
Nucleus | 0.0323 | 0.0059 | 0.0093 | 0.0112 | 0.0018 | 0.0112 | 0.0028 | 0.0024 | 0.0039 | 0.0005 | 0.0004 | 0.0016 | 0.0064 | 0.0015 | 0.0036 | 0.001 | 0.001 | 0.0042 |
Peroxisomes | 0.0018 | 0.0001 | 0.0051 | 0.0005 | 0.0003 | 0.0001 | 0.0014 | 0.0003 | 0.0024 | 0.0001 | 0.0001 | 0.0036 | 0.0014 | 0.0001 | 0.0012 | 0.0001 | 0.0001 | 0.0003 |
Punctate Nuclear | 0.0031 | 0 | 0.0031 | 0.0047 | 0.0021 | 0 | 0.0001 | 0.0001 | 0.0055 | 0 | 0 | 0.0006 | 0.0033 | 0.0001 | 0.0048 | 0 | 0 | 0.0034 |
Vacuole | 0.2064 | 0.2596 | 0.2076 | 0.2576 | 0.1854 | 0.1272 | 0.0858 | 0.1508 | 0.1405 | 0.1564 | 0.0789 | 0.0939 | 0.1316 | 0.1296 | 0.1194 | 0.1708 | 0.1565 | 0.0852 |
Vacuole Periphery | 0.583 | 0.6694 | 0.6376 | 0.671 | 0.731 | 0.7775 | 0.5653 | 0.6963 | 0.6572 | 0.7576 | 0.8488 | 0.6741 | 0.6255 | 0.7606 | 0.7222 | 0.7184 | 0.7921 | 0.7355 |
R1 | R2 | |||||||||
---|---|---|---|---|---|---|---|---|---|---|
G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | |
Gene Expression | 62.5707 | 48.2683 | 66.1564 | 83.18 | 68.3597 | 60.314 | 71.34 | 75.9544 | 82.5317 | 79.8039 |
Translational Efficiency | 1.0308 | 1.3152 | 1.0247 | 1.0182 | 0.9361 | 1.0597 | 1.0921 | 0.9308 | 0.9892 | 0.8809 |
Dataset | Hit |
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Protein Concentration | ✘ |
Protein Localization | ✘ |
Gene Expression | ✔ |
Translational Efficiency | ✘ |
Temp | Actin Patch (Sac6-tdTomato) | Cortical Patch (Sla1-GFP) | Late Endosome (Snf7-GFP) | Vacuole (Vph1-GFP) |
---|---|---|---|---|
37℃ | ||||
RT |
Gene / Allele | Actin Patch (Sac6-tdTomato) | Cortical Patch (Sla1-GFP) | Late Endosome (Snf7-GFP) | Vacuole (Sac6-tdTomato) |
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Gene | Images |
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Gene | Images |
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