Standard name | |
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Human Ortholog | |
Description | Protein with ubiquitin-like N terminus; subunit of Nuclear Excision Repair Factor 2 (NEF2) with Rad4p that binds damaged DNA; enhances protein deglycosylation activity of Png1p; also involved, with Rad4p, in ubiquitylated protein turnover; Rad4p-Rad23p heterodimer binds to promoters of DNA damage response genes to repress their transcription in the absence of DNA damage |
ensLOC | DeepLoc | |||||||||||||||||||||||
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Localization | WT1 | WT2 | WT3 | RAP60 | RAP140 | RAP220 | RAP300 | RAP380 | RAP460 | RAP540 | RAP620 | RAP700 | HU80 | HU120 | HU160 | rpd3Δ_1 | rpd3Δ_2 | rpd3Δ_3 | WT1 | WT2 | WT3 | AF100 | AF140 | AF180 |
Cortical Patches | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Bud | 0 | 0 | 0 | 0 | 0 | 0 | 11 | 7 | 4 | 7 | 7 | 5 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 2 | 1 | 6 | 4 |
Bud Neck | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Bud Site | 0 | 0 | 0 | 0 | 0 | 0 | 2 | 6 | 2 | 7 | 6 | 6 | 0 | 0 | 0 | 0 | 0 | 0 | – | – | – | – | – | – |
Cell Periphery | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Cytoplasm | 0 | 10 | 17 | 18 | 33 | 32 | 47 | 31 | 16 | 32 | 12 | 23 | 15 | 25 | 70 | 26 | 27 | 16 | 0 | 4 | 8 | 3 | 10 | 14 |
Endoplasmic Reticulum | 0 | 0 | 1 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 1 | 0 | 1 | 2 | 7 | 9 | 9 | 0 | 0 | 0 | 0 | 1 | 0 |
Endosome | 0 | 1 | 1 | 0 | 4 | 4 | 3 | 5 | 0 | 0 | 1 | 0 | 0 | 0 | 3 | 6 | 9 | 2 | 0 | 0 | 2 | 0 | 0 | 3 |
Golgi | 0 | 0 | 0 | 0 | 2 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 1 | 2 | 3 | 0 | 0 | 2 | 1 | 1 | 0 | 0 |
Mitochondria | 1 | 0 | 3 | 9 | 8 | 47 | 190 | 148 | 157 | 229 | 192 | 178 | 1 | 0 | 1 | 9 | 2 | 2 | 0 | 0 | 2 | 0 | 1 | 3 |
Nucleus | 18 | 80 | 99 | 123 | 162 | 139 | 315 | 253 | 207 | 306 | 207 | 265 | 176 | 139 | 168 | 79 | 70 | 54 | 57 | 108 | 130 | 45 | 107 | 116 |
Nuclear Periphery | 0 | 0 | 0 | 0 | 1 | 2 | 5 | 9 | 5 | 1 | 5 | 8 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 2 |
Nucleolus | 0 | 1 | 0 | 2 | 1 | 1 | 10 | 3 | 5 | 3 | 5 | 4 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 3 |
Peroxisomes | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
SpindlePole | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 3 | 3 |
Vac/Vac Membrane | 9 | 52 | 73 | 50 | 87 | 107 | 113 | 79 | 45 | 59 | 45 | 55 | 33 | 22 | 60 | 78 | 84 | 38 | 8 | 9 | 34 | 4 | 32 | 47 |
Unique Cell Count | 25 | 129 | 169 | 185 | 274 | 284 | 555 | 435 | 339 | 478 | 333 | 422 | 206 | 176 | 276 | 175 | 167 | 101 | 67 | 132 | 186 | 58 | 171 | 202 |
Labelled Cell Count | 28 | 144 | 194 | 202 | 298 | 332 | 697 | 541 | 441 | 644 | 480 | 545 | 226 | 188 | 305 | 208 | 204 | 121 | 67 | 132 | 186 | 58 | 171 | 202 |
Screen | WT1 | WT2 | WT3 | RAP60 | RAP140 | RAP220 | RAP300 | RAP380 | RAP460 | RAP540 | RAP620 | RAP700 | HU80 | HU120 | HU160 | rpd3Δ_1 | rpd3Δ_2 | rpd3Δ_3 | AF100 | AF140 | AF180 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Mean Cell GFP Intensity (1e-4) | 5.2 | 6.1 | 5.8 | 6.5 | 6.4 | 5.3 | 4.9 | 5.0 | 4.6 | 4.4 | 4.2 | 4.4 | 7.7 | 7.6 | 7.4 | 7.5 | 8.0 | 7.5 | 6.0 | 7.8 | 8.1 |
Std Deviation (1e-4) | 0.5 | 1.1 | 1.2 | 2.6 | 2.3 | 1.4 | 1.5 | 2.1 | 1.3 | 1.1 | 1.2 | 1.1 | 1.1 | 1.4 | 1.4 | 1.9 | 2.2 | 1.6 | 0.6 | 1.2 | 1.6 |
Intensity Change (Log2) | – | – | – | 0.16 | 0.14 | -0.13 | -0.25 | -0.21 | -0.35 | -0.39 | -0.48 | -0.41 | 0.41 | 0.39 | 0.35 | 0.37 | 0.47 | 0.36 | 0.04 | 0.42 | 0.47 |
Localization | RAP60 | RAP140 | RAP220 | RAP300 | RAP380 | RAP460 | RAP540 | RAP620 | RAP700 | HU80 | HU120 | HU160 | rpd3Δ_1 | rpd3Δ_2 | rpd3Δ_3 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Cortical Patches | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Bud | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Bud Neck | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Bud Site | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Cell Periphery | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Cytoplasm | -0.1 | 0.6 | 0.4 | -0.6 | -1.2 | -2.3 | -1.4 | -2.9 | -2.0 | -1.0 | 1.2 | 4.0 | 1.3 | 1.7 | 1.4 |
Endoplasmic Reticulum | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Endosome | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Golgi | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Mitochondria | 1.6 | 0 | 4.9 | 0 | 8.2 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1.7 | 0 | 0 |
Nucleus | 1.5 | 0.1 | -2.0 | -0.4 | -0.1 | 0.5 | 1.3 | 0.8 | 1.0 | 5.9 | 4.1 | 0.5 | -2.5 | -3.1 | -0.8 |
Nuclear Periphery | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Nucleolus | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Peroxisomes | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
SpindlePole | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Vacuole | -3.2 | -2.4 | -1.2 | -5.9 | -6.4 | -7.5 | -8.6 | -7.4 | -8.0 | -5.8 | -6.4 | -4.8 | 0.3 | 1.3 | -0.9 |
R1 | R2 | R3 | ||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
G1 Pre-START | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | G1 Pre-START | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | G1 Pre-START | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | |
Concentration | 5.4569 | 6.3858 | 5.4118 | 5.3702 | 4.5827 | 5.4238 | 3.5479 | 5.5206 | 4.6669 | 4.3953 | 4.8074 | 5.1338 | 4.4534 | 5.5372 | 4.7136 | 4.5284 | 4.643 | 4.7124 |
Actin | 0.0164 | 0 | 0.0004 | 0 | 0.0917 | 0.0019 | 0.0243 | 0 | 0.0044 | 0.0351 | 0 | 0.0326 | 0.0161 | 0.0001 | 0.0034 | 0.0109 | 0 | 0.0007 |
Bud | 0.0003 | 0 | 0.0001 | 0 | 0.0001 | 0.0013 | 0.0013 | 0 | 0.0004 | 0.0006 | 0 | 0.0023 | 0.0012 | 0.0001 | 0.0002 | 0.0003 | 0 | 0.0003 |
Bud Neck | 0.0008 | 0.0001 | 0.0002 | 0 | 0.0009 | 0.0011 | 0.0012 | 0 | 0.0002 | 0.0003 | 0.0004 | 0.0021 | 0.0011 | 0.0002 | 0.0008 | 0.0002 | 0.0001 | 0.0012 |
Bud Periphery | 0.0005 | 0 | 0.0001 | 0 | 0.0002 | 0.0012 | 0.0017 | 0 | 0.0004 | 0.0006 | 0 | 0.0021 | 0.0037 | 0.0001 | 0.0002 | 0.0005 | 0 | 0.0003 |
Bud Site | 0.0012 | 0.0001 | 0.0002 | 0 | 0.0004 | 0.0003 | 0.0036 | 0 | 0.0021 | 0.0011 | 0 | 0.0274 | 0.0018 | 0.0002 | 0.0047 | 0.0007 | 0 | 0.0007 |
Cell Periphery | 0.0001 | 0 | 0 | 0 | 0.0001 | 0.0001 | 0.0004 | 0 | 0.0001 | 0.0001 | 0 | 0.0002 | 0.0006 | 0.0001 | 0.0001 | 0.0001 | 0 | 0 |
Cytoplasm | 0.0037 | 0.008 | 0.0062 | 0.0002 | 0.0018 | 0.0027 | 0.0904 | 0.0022 | 0.0013 | 0.004 | 0.0009 | 0.0014 | 0.0019 | 0.0016 | 0.0131 | 0.0006 | 0.0016 | 0.0014 |
Cytoplasmic Foci | 0.0015 | 0 | 0.0005 | 0 | 0.006 | 0.0005 | 0.0269 | 0 | 0.0079 | 0.0165 | 0 | 0.003 | 0.0121 | 0 | 0.0118 | 0.0207 | 0 | 0.0051 |
Eisosomes | 0.0004 | 0 | 0 | 0 | 0.0005 | 0 | 0.0002 | 0 | 0 | 0.0004 | 0 | 0.0001 | 0.0013 | 0 | 0 | 0.0002 | 0 | 0 |
Endoplasmic Reticulum | 0.0026 | 0 | 0.0007 | 0 | 0.0009 | 0.0003 | 0.0094 | 0 | 0.0005 | 0.0023 | 0.0001 | 0.0002 | 0.0017 | 0.0002 | 0.0013 | 0.0008 | 0 | 0.0002 |
Endosome | 0.0062 | 0 | 0.0016 | 0 | 0.0075 | 0.003 | 0.0536 | 0 | 0.0131 | 0.0206 | 0 | 0.006 | 0.0061 | 0.0001 | 0.0097 | 0.0223 | 0 | 0.0067 |
Golgi | 0.0025 | 0 | 0.0003 | 0 | 0.0055 | 0.0014 | 0.0232 | 0 | 0.0042 | 0.0227 | 0 | 0.0148 | 0.0019 | 0 | 0.0057 | 0.0305 | 0 | 0.0033 |
Lipid Particles | 0.0024 | 0 | 0.0012 | 0 | 0.0079 | 0.0009 | 0.0072 | 0 | 0.0048 | 0.0149 | 0 | 0.0026 | 0.0022 | 0 | 0.0066 | 0.0843 | 0 | 0.0009 |
Mitochondria | 0.0053 | 0.0001 | 0.0036 | 0.0001 | 0.0008 | 0.0031 | 0.0102 | 0.0002 | 0.0081 | 0.0604 | 0.0003 | 0.0039 | 0.0152 | 0.0004 | 0.0069 | 0.014 | 0.0001 | 0.0016 |
None | 0.0008 | 0.0007 | 0.0001 | 0 | 0.0051 | 0.0054 | 0.0058 | 0 | 0.0005 | 0.0014 | 0 | 0.0001 | 0.0009 | 0.0001 | 0.0008 | 0.0004 | 0 | 0.0001 |
Nuclear Periphery | 0.0217 | 0.0031 | 0.0117 | 0.0018 | 0.011 | 0.0029 | 0.0332 | 0.0073 | 0.0069 | 0.0148 | 0.0069 | 0.0076 | 0.0093 | 0.0064 | 0.0052 | 0.0063 | 0.0019 | 0.0021 |
Nucleolus | 0.0021 | 0.0021 | 0.002 | 0.0006 | 0.0035 | 0.0061 | 0.0042 | 0.0013 | 0.0046 | 0.004 | 0.0033 | 0.0038 | 0.0046 | 0.0031 | 0.0009 | 0.0009 | 0.0017 | 0.0031 |
Nucleus | 0.9199 | 0.9854 | 0.964 | 0.9972 | 0.8043 | 0.9639 | 0.6577 | 0.988 | 0.9281 | 0.7487 | 0.9865 | 0.8848 | 0.9084 | 0.9859 | 0.9175 | 0.7835 | 0.9941 | 0.9697 |
Peroxisomes | 0.0037 | 0 | 0.0045 | 0 | 0.0327 | 0.0002 | 0.0016 | 0 | 0.0018 | 0.0105 | 0 | 0.0028 | 0.0016 | 0 | 0.008 | 0.0174 | 0 | 0.0012 |
Punctate Nuclear | 0.0064 | 0.0002 | 0.001 | 0.0001 | 0.0186 | 0.0016 | 0.0206 | 0.0003 | 0.0048 | 0.0388 | 0.0011 | 0.0006 | 0.0019 | 0.0004 | 0.0012 | 0.0021 | 0.0003 | 0.0008 |
Vacuole | 0.0008 | 0.0001 | 0.0012 | 0 | 0.0002 | 0.0013 | 0.0165 | 0.0003 | 0.0033 | 0.0005 | 0.0002 | 0.0009 | 0.004 | 0.0006 | 0.001 | 0.001 | 0.0001 | 0.0006 |
Vacuole Periphery | 0.0008 | 0 | 0.0005 | 0 | 0.0003 | 0.0008 | 0.0069 | 0.0001 | 0.0024 | 0.0016 | 0.0001 | 0.0005 | 0.0025 | 0.0003 | 0.0008 | 0.0025 | 0 | 0.0002 |
R1 | R2 | |||||||||
---|---|---|---|---|---|---|---|---|---|---|
G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | |
Gene Expression | 92.1808 | 84.0521 | 103.9505 | 95.8599 | 75.2954 | 93.0511 | 110.1889 | 98.4103 | 116.2416 | 76.7464 |
Translational Efficiency | 2.6828 | 3.6268 | 2.6468 | 2.9144 | 3.147 | 2.8323 | 2.0206 | 2.7267 | 1.9622 | 2.3483 |
Dataset | Hit |
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Protein Concentration | ✘ |
Protein Localization | ✘ |
Gene Expression | ✘ |
Translational Efficiency | ✘ |
Temp | Actin Patch (Sac6-tdTomato) | Cortical Patch (Sla1-GFP) | Late Endosome (Snf7-GFP) | Vacuole (Vph1-GFP) |
---|---|---|---|---|
37℃ | ||||
RT |
Gene / Allele | Actin Patch (Sac6-tdTomato) | Cortical Patch (Sla1-GFP) | Late Endosome (Snf7-GFP) | Vacuole (Sac6-tdTomato) |
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Gene | Images |
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Gene | Images |
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