Standard name | |
---|---|
Human Ortholog | |
Description | Transcriptional regulator; partially nonfunctional in S288C strains but has a major role in catabolite repression and ethanol response in some other strains; involved in response to toxic agents; phosphorylation by Snf1p or the Mec1p pathway inactivates Mig3p, allowing induction of damage response genes |
ensLOC | DeepLoc | |||||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Localization | WT1 | WT2 | WT3 | RAP60 | RAP140 | RAP220 | RAP300 | RAP380 | RAP460 | RAP540 | RAP620 | RAP700 | HU80 | HU120 | HU160 | rpd3Δ_1 | rpd3Δ_2 | rpd3Δ_3 | WT1 | WT2 | WT3 | AF100 | AF140 | AF180 |
Cortical Patches | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 1 | 2 | 0 | 1 | 3 |
Bud | 1 | 1 | 3 | 4 | 10 | 14 | 11 | 17 | 11 | 17 | 17 | 9 | 0 | 0 | 0 | 1 | 0 | 0 | 3 | 7 | 7 | 6 | 5 | 5 |
Bud Neck | 0 | 0 | 1 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 1 | 0 | 3 | 1 | 1 | 1 | 0 | 1 | 1 | 2 | 2 | 3 | 4 | 6 |
Bud Site | 0 | 0 | 2 | 1 | 2 | 13 | 8 | 11 | 17 | 29 | 26 | 15 | 0 | 0 | 0 | 0 | 0 | 0 | – | – | – | – | – | – |
Cell Periphery | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 1 | 0 | 1 | 2 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Cytoplasm | 50 | 52 | 106 | 75 | 146 | 186 | 165 | 115 | 106 | 115 | 113 | 96 | 78 | 102 | 212 | 154 | 142 | 121 | 49 | 37 | 76 | 106 | 168 | 280 |
Endoplasmic Reticulum | 1 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 24 | 18 | 16 | 0 | 0 | 4 | 1 | 1 | 1 |
Endosome | 0 | 2 | 25 | 8 | 15 | 0 | 3 | 6 | 1 | 0 | 0 | 0 | 5 | 6 | 23 | 20 | 18 | 23 | 5 | 3 | 15 | 6 | 7 | 12 |
Golgi | 0 | 1 | 0 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 2 | 0 | 0 | 1 | 0 | 1 | 0 | 0 | 0 |
Mitochondria | 96 | 24 | 108 | 109 | 143 | 377 | 500 | 389 | 401 | 457 | 410 | 472 | 1 | 0 | 0 | 20 | 20 | 11 | 17 | 5 | 45 | 9 | 11 | 11 |
Nucleus | 24 | 57 | 104 | 72 | 71 | 85 | 120 | 148 | 118 | 140 | 100 | 113 | 250 | 245 | 156 | 91 | 59 | 48 | 54 | 91 | 150 | 57 | 23 | 10 |
Nuclear Periphery | 0 | 0 | 0 | 0 | 0 | 1 | 1 | 3 | 0 | 1 | 1 | 6 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 3 | 0 | 0 | 0 |
Nucleolus | 0 | 0 | 0 | 0 | 1 | 1 | 3 | 3 | 4 | 10 | 2 | 3 | 0 | 1 | 0 | 1 | 1 | 0 | 1 | 4 | 19 | 4 | 2 | 1 |
Peroxisomes | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 2 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
SpindlePole | 0 | 0 | 11 | 16 | 2 | 2 | 4 | 8 | 9 | 4 | 4 | 2 | 5 | 9 | 8 | 5 | 10 | 4 | 16 | 11 | 45 | 30 | 27 | 26 |
Vac/Vac Membrane | 13 | 41 | 33 | 24 | 32 | 32 | 38 | 35 | 21 | 22 | 31 | 39 | 14 | 30 | 66 | 72 | 62 | 99 | 42 | 36 | 88 | 51 | 32 | 20 |
Unique Cell Count | 160 | 159 | 338 | 255 | 348 | 541 | 643 | 550 | 511 | 579 | 511 | 555 | 345 | 369 | 439 | 339 | 291 | 284 | 204 | 208 | 492 | 290 | 298 | 397 |
Labelled Cell Count | 185 | 178 | 393 | 310 | 423 | 713 | 854 | 735 | 688 | 797 | 705 | 756 | 357 | 395 | 467 | 393 | 332 | 323 | 204 | 208 | 492 | 290 | 298 | 397 |
Screen | WT1 | WT2 | WT3 | RAP60 | RAP140 | RAP220 | RAP300 | RAP380 | RAP460 | RAP540 | RAP620 | RAP700 | HU80 | HU120 | HU160 | rpd3Δ_1 | rpd3Δ_2 | rpd3Δ_3 | AF100 | AF140 | AF180 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Mean Cell GFP Intensity (1e-4) | 3.3 | 4.4 | 3.9 | 3.8 | 3.8 | 3.2 | 3.1 | 3.3 | 3.0 | 3.1 | 2.6 | 2.8 | 5.6 | 5.8 | 5.4 | 6.0 | 5.4 | 5.6 | 5.4 | 5.6 | 5.4 |
Std Deviation (1e-4) | 0.5 | 0.7 | 1.0 | 1.2 | 1.5 | 1.3 | 1.1 | 0.9 | 0.9 | 0.8 | 0.8 | 0.5 | 0.9 | 1.0 | 0.9 | 1.5 | 1.4 | 1.3 | 1.2 | 1.7 | 1.4 |
Intensity Change (Log2) | – | – | – | -0.04 | -0.03 | -0.26 | -0.31 | -0.25 | -0.36 | -0.35 | -0.56 | -0.46 | 0.54 | 0.57 | 0.46 | 0.63 | 0.48 | 0.53 | 0.47 | 0.53 | 0.48 |
Localization | RAP60 | RAP140 | RAP220 | RAP300 | RAP380 | RAP460 | RAP540 | RAP620 | RAP700 | HU80 | HU120 | HU160 | rpd3Δ_1 | rpd3Δ_2 | rpd3Δ_3 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Actin | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – |
Bud | – | – | – | – | – | – | – | – | – | – | – | – | 0 | 0 | 0 |
Bud Neck | – | – | – | – | – | – | – | – | – | – | – | – | 0 | 0 | 0 |
Bud Site | – | – | – | – | – | – | – | – | – | – | – | – | 0 | 0 | 0 |
Cell Periphery | – | – | – | – | – | – | – | – | – | – | – | – | 0 | 0 | 0 |
Cyto | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – |
Endoplasmic Reticulum | – | – | – | – | – | – | – | – | – | – | – | – | 0 | 0 | 0 |
Endosome | – | – | – | – | – | – | – | – | – | – | – | – | 0 | 0 | 0 |
Golgi | – | – | – | – | – | – | – | – | – | – | – | – | 0 | 0 | 0 |
Mitochondria | – | – | – | – | – | – | – | – | – | – | – | – | 0 | 0 | 0 |
Nuclear Periphery | – | – | – | – | – | – | – | – | – | – | – | – | 0 | 0 | 0 |
Nuc | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – |
Nucleolus | – | – | – | – | – | – | – | – | – | – | – | – | 0 | 0 | 0 |
Peroxisomes | – | – | – | – | – | – | – | – | – | – | – | – | 0 | 0 | 0 |
SpindlePole | – | – | – | – | – | – | – | – | – | – | – | – | 0 | 0 | 0 |
Vac | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – |
Cortical Patches | – | – | – | – | – | – | – | – | – | – | – | – | 0 | 0 | 0 |
Cytoplasm | – | – | – | – | – | – | – | – | – | – | – | – | 0 | 0 | 0 |
Nucleus | – | – | – | – | – | – | – | – | – | – | – | – | 0 | 0 | 0 |
Vacuole | – | – | – | – | – | – | – | – | – | – | – | – | 4.1 | 4.0 | 7.6 |
R1 | R2 | R3 | ||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
G1 Pre-START | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | G1 Pre-START | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | G1 Pre-START | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | |
Concentration | 2.7293 | 2.413 | 1.3183 | 0.8554 | 1.5197 | 1.3333 | 1.0049 | 0.1419 | 0.251 | 0.7255 | 0.2358 | 0.3551 | -0.211 | -0.1852 | 0.0558 | 0.7203 | -0.2576 | -0.0745 |
Actin | 0.0481 | 0.0005 | 0.0025 | 0.0005 | 0.0004 | 0.0056 | 0.0486 | 0.0023 | 0.0054 | 0.0477 | 0.0212 | 0.0048 | 0.0097 | 0.0003 | 0.0093 | 0.0091 | 0.0001 | 0.0013 |
Bud | 0.0097 | 0.0074 | 0.0055 | 0.0003 | 0.0001 | 0.0023 | 0.0011 | 0.0007 | 0.0004 | 0.0083 | 0.0087 | 0.0005 | 0.0003 | 0.0002 | 0.0002 | 0.0009 | 0 | 0.0001 |
Bud Neck | 0.0064 | 0.001 | 0.0016 | 0.0019 | 0.0114 | 0.0182 | 0.011 | 0.0008 | 0.0011 | 0.0016 | 0.0012 | 0.0148 | 0.0017 | 0.0007 | 0.0007 | 0.004 | 0.0005 | 0.0025 |
Bud Periphery | 0.0027 | 0.0011 | 0.0008 | 0.0004 | 0.0001 | 0.0022 | 0.0019 | 0.0007 | 0.0005 | 0.0186 | 0.0437 | 0.0008 | 0.0005 | 0.0002 | 0.0002 | 0.0023 | 0 | 0.0002 |
Bud Site | 0.0444 | 0.009 | 0.0042 | 0.0016 | 0.0002 | 0.0018 | 0.017 | 0.0075 | 0.0024 | 0.0099 | 0.0022 | 0.0014 | 0.0036 | 0.0008 | 0.0011 | 0.0023 | 0.0001 | 0.0001 |
Cell Periphery | 0.0007 | 0.0003 | 0.0001 | 0 | 0 | 0.0001 | 0.0006 | 0.0001 | 0.0001 | 0.0008 | 0.0006 | 0.0001 | 0.0003 | 0 | 0.0001 | 0.0003 | 0 | 0 |
Cytoplasm | 0.0777 | 0.1448 | 0.0564 | 0.067 | 0.0621 | 0.0651 | 0.0896 | 0.1523 | 0.0826 | 0.1386 | 0.0745 | 0.0974 | 0.0871 | 0.091 | 0.0681 | 0.0614 | 0.0264 | 0.0554 |
Cytoplasmic Foci | 0.0412 | 0.0153 | 0.0253 | 0.0101 | 0.0189 | 0.0039 | 0.0202 | 0.0049 | 0.005 | 0.006 | 0.004 | 0.0081 | 0.0203 | 0.0018 | 0.0103 | 0.0128 | 0.0075 | 0.0025 |
Eisosomes | 0.0004 | 0.0001 | 0.0001 | 0 | 0.0001 | 0.0001 | 0.0006 | 0 | 0.0001 | 0.0001 | 0.0001 | 0.0001 | 0.0002 | 0 | 0.0001 | 0.0001 | 0 | 0.0001 |
Endoplasmic Reticulum | 0.0127 | 0.005 | 0.0025 | 0.0012 | 0.0016 | 0.0011 | 0.006 | 0.003 | 0.0015 | 0.0039 | 0.002 | 0.0033 | 0.0048 | 0.0028 | 0.0027 | 0.0051 | 0.0007 | 0.0008 |
Endosome | 0.057 | 0.0059 | 0.0065 | 0.0018 | 0.0543 | 0.0032 | 0.0248 | 0.0034 | 0.0042 | 0.0382 | 0.0034 | 0.0087 | 0.0118 | 0.0019 | 0.0072 | 0.0144 | 0.0014 | 0.0023 |
Golgi | 0.0203 | 0.0006 | 0.0032 | 0.0007 | 0.001 | 0.0009 | 0.0086 | 0.0002 | 0.0007 | 0.0074 | 0.0005 | 0.0016 | 0.0021 | 0.0001 | 0.0022 | 0.0027 | 0.0005 | 0.0008 |
Lipid Particles | 0.0254 | 0.0023 | 0.0161 | 0.001 | 0.0044 | 0.0013 | 0.0077 | 0.0003 | 0.0006 | 0.0012 | 0.0002 | 0.0052 | 0.0076 | 0.0001 | 0.0044 | 0.0019 | 0.0043 | 0.001 |
Mitochondria | 0.0114 | 0.001 | 0.0017 | 0.0007 | 0.0013 | 0.0032 | 0.0168 | 0.0008 | 0.0139 | 0.0109 | 0.0015 | 0.0026 | 0.0031 | 0.0005 | 0.0053 | 0.0673 | 0.0001 | 0.0035 |
None | 0.1209 | 0.2891 | 0.1919 | 0.172 | 0.2092 | 0.1057 | 0.1776 | 0.1938 | 0.1374 | 0.1612 | 0.1928 | 0.0502 | 0.1178 | 0.0934 | 0.0877 | 0.152 | 0.0468 | 0.0755 |
Nuclear Periphery | 0.0356 | 0.0222 | 0.0226 | 0.0107 | 0.0152 | 0.0082 | 0.0409 | 0.0149 | 0.0104 | 0.0099 | 0.0062 | 0.0184 | 0.0218 | 0.0117 | 0.0143 | 0.0174 | 0.0087 | 0.0062 |
Nucleolus | 0.009 | 0.0085 | 0.007 | 0.0083 | 0.0117 | 0.0137 | 0.0082 | 0.0052 | 0.0066 | 0.003 | 0.0101 | 0.0106 | 0.0076 | 0.0062 | 0.0067 | 0.0151 | 0.009 | 0.0106 |
Nucleus | 0.3638 | 0.4153 | 0.566 | 0.6154 | 0.5421 | 0.6989 | 0.4544 | 0.5604 | 0.6854 | 0.449 | 0.5895 | 0.7016 | 0.631 | 0.7606 | 0.6885 | 0.576 | 0.7757 | 0.788 |
Peroxisomes | 0.0106 | 0.0021 | 0.0115 | 0.0051 | 0.0007 | 0.0009 | 0.0055 | 0.0012 | 0.0009 | 0.0014 | 0.0001 | 0.0053 | 0.0069 | 0 | 0.0037 | 0.0051 | 0.0302 | 0.0003 |
Punctate Nuclear | 0.0946 | 0.0645 | 0.0734 | 0.1003 | 0.0593 | 0.0627 | 0.0522 | 0.0437 | 0.0378 | 0.0694 | 0.0357 | 0.0618 | 0.0573 | 0.026 | 0.0855 | 0.0454 | 0.0876 | 0.0479 |
Vacuole | 0.0049 | 0.0034 | 0.0008 | 0.0009 | 0.0049 | 0.0008 | 0.0044 | 0.0032 | 0.0027 | 0.0104 | 0.0015 | 0.0021 | 0.0035 | 0.0013 | 0.0014 | 0.0032 | 0.0004 | 0.0007 |
Vacuole Periphery | 0.0024 | 0.0007 | 0.0003 | 0.0002 | 0.0011 | 0.0004 | 0.0023 | 0.0005 | 0.0005 | 0.0025 | 0.0004 | 0.0009 | 0.001 | 0.0003 | 0.0004 | 0.001 | 0.0001 | 0.0003 |
R1 | R2 | |||||||||
---|---|---|---|---|---|---|---|---|---|---|
G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | |
Gene Expression | 9.777 | 8.3238 | 8.6473 | 6.5669 | 9.0545 | 7.445 | 9.6787 | 10.2247 | 8.0058 | 9.8018 |
Translational Efficiency | 0.7859 | 0.9676 | 0.9185 | 0.6499 | 0.849 | 1.0391 | 0.7663 | 0.7878 | 0.781 | 0.9452 |
Dataset | Hit |
---|---|
Protein Concentration | ✔ |
Protein Localization | ✘ |
Gene Expression | ✘ |
Translational Efficiency | ✘ |
Temp | Actin Patch (Sac6-tdTomato) | Cortical Patch (Sla1-GFP) | Late Endosome (Snf7-GFP) | Vacuole (Vph1-GFP) |
---|---|---|---|---|
37℃ | ||||
RT |
Gene / Allele | Actin Patch (Sac6-tdTomato) | Cortical Patch (Sla1-GFP) | Late Endosome (Snf7-GFP) | Vacuole (Sac6-tdTomato) |
---|
Gene | Images |
---|
Gene | Images |
---|