Standard name | |
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Human Ortholog | |
Description | Fe(II)/2-oxoglutarate-dependent dioxygenase family member; catalyzes the repair of methyl-base lesions in both ss and dsDNA by oxidative demethylation; Poly(rA)-binding protein involved in mRNA poly(A) tail length and mRNA stability; role in translation termination efficiency; interacts with Sup45p (eRF1), Sup35p (eRF3) and Pab1p; similar to human prolyl 4-hydroxylase OGFOD1; binds Fe(II) and 2-oxoglutarate |
ensLOC | DeepLoc | |||||||||||||||||||||||
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Localization | WT1 | WT2 | WT3 | RAP60 | RAP140 | RAP220 | RAP300 | RAP380 | RAP460 | RAP540 | RAP620 | RAP700 | HU80 | HU120 | HU160 | rpd3Δ_1 | rpd3Δ_2 | rpd3Δ_3 | WT1 | WT2 | WT3 | AF100 | AF140 | AF180 |
Cortical Patches | 0 | 2 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Bud | 0 | 2 | 0 | 0 | 0 | 1 | 0 | 0 | 2 | 1 | 0 | 2 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 4 | 3 | 0 | 2 | 3 |
Bud Neck | 0 | 0 | 0 | 0 | 1 | 0 | 1 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Bud Site | 0 | 0 | 0 | 0 | 1 | 1 | 4 | 2 | 3 | 4 | 4 | 8 | 0 | 1 | 0 | 0 | 0 | 1 | – | – | – | – | – | – |
Cell Periphery | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Cytoplasm | 6 | 50 | 14 | 7 | 10 | 7 | 20 | 16 | 10 | 17 | 8 | 16 | 13 | 39 | 45 | 23 | 32 | 31 | 0 | 2 | 0 | 1 | 2 | 1 |
Endoplasmic Reticulum | 2 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 1 | 0 | 2 | 5 | 10 | 0 | 0 | 1 | 0 | 2 | 0 |
Endosome | 1 | 1 | 1 | 0 | 1 | 2 | 2 | 1 | 0 | 1 | 0 | 2 | 0 | 0 | 4 | 1 | 0 | 1 | 2 | 5 | 1 | 0 | 0 | 4 |
Golgi | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 1 | 3 | 0 | 1 | 0 | 3 | 2 | 0 |
Mitochondria | 7 | 6 | 0 | 0 | 0 | 18 | 27 | 24 | 35 | 32 | 71 | 56 | 0 | 0 | 0 | 6 | 2 | 6 | 2 | 1 | 0 | 0 | 1 | 5 |
Nucleus | 386 | 348 | 264 | 207 | 233 | 257 | 336 | 310 | 275 | 278 | 244 | 359 | 216 | 190 | 227 | 154 | 150 | 185 | 382 | 437 | 278 | 166 | 260 | 205 |
Nuclear Periphery | 1 | 5 | 0 | 3 | 2 | 0 | 1 | 1 | 1 | 0 | 2 | 4 | 1 | 1 | 3 | 2 | 2 | 1 | 1 | 1 | 0 | 0 | 1 | 1 |
Nucleolus | 3 | 9 | 2 | 2 | 2 | 14 | 8 | 4 | 13 | 15 | 20 | 18 | 2 | 3 | 10 | 7 | 6 | 5 | 1 | 3 | 1 | 2 | 17 | 17 |
Peroxisomes | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 2 | 1 | 3 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
SpindlePole | 0 | 0 | 0 | 0 | 0 | 0 | 2 | 6 | 4 | 1 | 0 | 1 | 1 | 5 | 9 | 1 | 1 | 0 | 0 | 2 | 1 | 0 | 4 | 2 |
Vac/Vac Membrane | 2 | 33 | 8 | 2 | 6 | 7 | 6 | 4 | 2 | 5 | 5 | 15 | 5 | 5 | 6 | 14 | 17 | 26 | 7 | 24 | 10 | 6 | 35 | 42 |
Unique Cell Count | 401 | 433 | 284 | 215 | 253 | 285 | 376 | 345 | 307 | 321 | 289 | 421 | 237 | 237 | 287 | 203 | 207 | 248 | 402 | 487 | 303 | 185 | 332 | 288 |
Labelled Cell Count | 408 | 456 | 290 | 221 | 256 | 307 | 407 | 368 | 345 | 355 | 354 | 481 | 241 | 246 | 308 | 212 | 218 | 269 | 402 | 487 | 303 | 185 | 332 | 288 |
Screen | WT1 | WT2 | WT3 | RAP60 | RAP140 | RAP220 | RAP300 | RAP380 | RAP460 | RAP540 | RAP620 | RAP700 | HU80 | HU120 | HU160 | rpd3Δ_1 | rpd3Δ_2 | rpd3Δ_3 | AF100 | AF140 | AF180 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Mean Cell GFP Intensity (1e-4) | 7.5 | 11.5 | 9.6 | 9.8 | 8.7 | 6.9 | 6.5 | 6.7 | 5.7 | 6.0 | 5.3 | 5.5 | 12.6 | 10.7 | 10.0 | 13.1 | 12.9 | 12.9 | 10.1 | 10.2 | 9.6 |
Std Deviation (1e-4) | 1.4 | 4.3 | 1.8 | 2.2 | 1.6 | 1.6 | 1.8 | 1.8 | 1.4 | 1.6 | 1.3 | 1.3 | 3.1 | 3.6 | 3.3 | 5.4 | 5.1 | 4.7 | 2.3 | 2.3 | 1.8 |
Intensity Change (Log2) | – | – | – | 0.03 | -0.13 | -0.48 | -0.55 | -0.51 | -0.75 | -0.68 | -0.84 | -0.81 | 0.39 | 0.16 | 0.06 | 0.45 | 0.42 | 0.42 | 0.08 | 0.08 | -0.0 |
Localization | RAP60 | RAP140 | RAP220 | RAP300 | RAP380 | RAP460 | RAP540 | RAP620 | RAP700 | HU80 | HU120 | HU160 | rpd3Δ_1 | rpd3Δ_2 | rpd3Δ_3 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Cortical Patches | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Bud | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Bud Neck | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Bud Site | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Cell Periphery | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Cytoplasm | -0.9 | -0.5 | -1.6 | 0.2 | -0.2 | -1.0 | 0.2 | -1.3 | -0.7 | 0.3 | 4.3 | 4.2 | 2.6 | 4.0 | 3.1 |
Endoplasmic Reticulum | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Endosome | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Golgi | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Mitochondria | 0 | 0 | 4.3 | 4.6 | 4.5 | 5.9 | 5.5 | 8.9 | 6.4 | 0 | 0 | 0 | 0 | 0 | 0 |
Nucleus | 1.6 | -0.4 | -1.2 | -1.6 | -1.4 | -1.4 | -2.6 | -3.2 | -3.1 | -0.8 | -4.3 | -4.8 | -5.3 | -6.2 | -5.8 |
Nuclear Periphery | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Nucleolus | 0 | 0 | 3.0 | 0 | 0 | 2.7 | 2.9 | 3.9 | 2.8 | 0 | 0 | 2.3 | 0 | 0 | 0 |
Peroxisomes | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
SpindlePole | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Vacuole | 0 | -0.3 | -0.3 | -1.1 | -1.5 | 0 | -1.1 | -0.9 | 0.5 | -0.5 | -0.5 | -0.6 | 2.1 | 2.7 | 3.6 |
R1 | R2 | R3 | ||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
G1 Pre-START | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | G1 Pre-START | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | G1 Pre-START | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | |
Concentration | 7.4019 | 9.4859 | 8.2212 | 6.7307 | 6.0771 | 8.567 | 7.083 | 8.2557 | 7.0838 | 7.0639 | 5.8625 | 7.1759 | 7.1324 | 9.522 | 8.0705 | 8.1092 | 5.676 | 8.4925 |
Actin | 0.0242 | 0 | 0.0004 | 0.0216 | 0.0054 | 0.0118 | 0.0095 | 0 | 0.0024 | 0.0092 | 0.0107 | 0.0027 | 0.0336 | 0 | 0.0195 | 0 | 0.0472 | 0.0113 |
Bud | 0.0004 | 0 | 0.0003 | 0.0004 | 0.0006 | 0.0006 | 0.0001 | 0 | 0.0003 | 0.0006 | 0.001 | 0.0002 | 0.0009 | 0 | 0.0002 | 0 | 0.005 | 0.0002 |
Bud Neck | 0.0004 | 0 | 0.0001 | 0.0027 | 0.0008 | 0.0009 | 0.0001 | 0 | 0.0046 | 0.0004 | 0.0005 | 0.0004 | 0.0008 | 0 | 0.0012 | 0 | 0.0011 | 0.0016 |
Bud Periphery | 0.0004 | 0 | 0.0008 | 0.0005 | 0.002 | 0.0014 | 0.0002 | 0 | 0.0004 | 0.0013 | 0.0018 | 0.0002 | 0.0017 | 0 | 0.0004 | 0 | 0.0097 | 0.0003 |
Bud Site | 0.0026 | 0 | 0.0005 | 0.002 | 0.0009 | 0.0008 | 0.0003 | 0.0001 | 0.0015 | 0.0012 | 0.0021 | 0.0001 | 0.0063 | 0 | 0.0027 | 0 | 0.0032 | 0.0003 |
Cell Periphery | 0.0002 | 0 | 0.0004 | 0.0004 | 0.001 | 0.0003 | 0.0001 | 0 | 0.0001 | 0.0003 | 0.0001 | 0 | 0.0009 | 0 | 0.0002 | 0 | 0.0003 | 0.0001 |
Cytoplasm | 0.0217 | 0 | 0.0004 | 0.0012 | 0.0006 | 0.0013 | 0.005 | 0.0003 | 0.0004 | 0.0014 | 0.0018 | 0.0033 | 0.0045 | 0 | 0.0004 | 0 | 0.003 | 0.0001 |
Cytoplasmic Foci | 0.0262 | 0 | 0.0011 | 0.014 | 0.0044 | 0.0009 | 0.0063 | 0 | 0.0008 | 0.0011 | 0.0179 | 0.0006 | 0.0169 | 0 | 0.0076 | 0 | 0.0494 | 0.0014 |
Eisosomes | 0.0002 | 0 | 0 | 0.0001 | 0.0001 | 0 | 0.0001 | 0 | 0 | 0.0003 | 0.0001 | 0 | 0.0007 | 0 | 0.0001 | 0 | 0.0003 | 0.0001 |
Endoplasmic Reticulum | 0.003 | 0 | 0.0005 | 0.0002 | 0.0026 | 0.0003 | 0.0013 | 0 | 0.0001 | 0.0028 | 0.001 | 0.0006 | 0.0071 | 0 | 0.0002 | 0 | 0.0039 | 0.0002 |
Endosome | 0.0263 | 0 | 0.0007 | 0.0079 | 0.0738 | 0.0034 | 0.0067 | 0.0001 | 0.0011 | 0.0088 | 0.0164 | 0.0026 | 0.0222 | 0 | 0.0033 | 0 | 0.041 | 0.0044 |
Golgi | 0.0082 | 0 | 0.0008 | 0.0401 | 0.0421 | 0.0019 | 0.0012 | 0 | 0.001 | 0.0018 | 0.0152 | 0.0015 | 0.0069 | 0 | 0.0055 | 0 | 0.0416 | 0.0039 |
Lipid Particles | 0.0305 | 0 | 0.0055 | 0.005 | 0.0237 | 0.004 | 0.0068 | 0 | 0.0007 | 0.0025 | 0.022 | 0.0007 | 0.0094 | 0 | 0.0062 | 0 | 0.0149 | 0.0024 |
Mitochondria | 0.0039 | 0.0001 | 0.003 | 0.005 | 0.0487 | 0.0089 | 0.0029 | 0.0001 | 0.0016 | 0.0434 | 0.041 | 0.001 | 0.0371 | 0.0001 | 0.0054 | 0.0001 | 0.0232 | 0.0031 |
None | 0.0026 | 0 | 0.0002 | 0.0003 | 0.0007 | 0.0002 | 0.0073 | 0 | 0.0003 | 0.0011 | 0.0015 | 0.0004 | 0.003 | 0 | 0.0002 | 0 | 0.0008 | 0.0001 |
Nuclear Periphery | 0.0047 | 0.001 | 0.0126 | 0.0062 | 0.0174 | 0.0018 | 0.0148 | 0.0013 | 0.0022 | 0.0269 | 0.0158 | 0.0044 | 0.0152 | 0.0006 | 0.001 | 0.0003 | 0.0049 | 0.0009 |
Nucleolus | 0.032 | 0.0062 | 0.0221 | 0.0886 | 0.111 | 0.0492 | 0.0149 | 0.0071 | 0.0065 | 0.0182 | 0.0385 | 0.0316 | 0.0198 | 0.0056 | 0.0058 | 0.01 | 0.056 | 0.0228 |
Nucleus | 0.7776 | 0.9926 | 0.9392 | 0.7789 | 0.6294 | 0.9032 | 0.8992 | 0.9889 | 0.9668 | 0.8684 | 0.7823 | 0.9453 | 0.792 | 0.9935 | 0.9211 | 0.9894 | 0.6367 | 0.9402 |
Peroxisomes | 0.013 | 0 | 0.0045 | 0.0162 | 0.0014 | 0.0009 | 0.0022 | 0 | 0.0006 | 0.0008 | 0.0149 | 0.0001 | 0.0061 | 0 | 0.0092 | 0 | 0.0476 | 0.0011 |
Punctate Nuclear | 0.0184 | 0 | 0.0015 | 0.0052 | 0.001 | 0.0013 | 0.0166 | 0.0006 | 0.0082 | 0.0023 | 0.013 | 0.0022 | 0.0061 | 0 | 0.0006 | 0.0001 | 0.0039 | 0.0043 |
Vacuole | 0.0019 | 0 | 0.0028 | 0.0026 | 0.0086 | 0.0051 | 0.0019 | 0.0011 | 0.0004 | 0.003 | 0.001 | 0.0013 | 0.0041 | 0.0001 | 0.0038 | 0 | 0.0035 | 0.0007 |
Vacuole Periphery | 0.0016 | 0 | 0.0027 | 0.0008 | 0.0238 | 0.0019 | 0.0023 | 0.0004 | 0.0002 | 0.0042 | 0.0014 | 0.0005 | 0.0047 | 0.0002 | 0.0053 | 0 | 0.0028 | 0.0003 |
R1 | R2 | |||||||||
---|---|---|---|---|---|---|---|---|---|---|
G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | |
Gene Expression | 73.8454 | 82.0706 | 100.239 | 67.6756 | 79.1088 | 59.2716 | 78.2139 | 65.9212 | 58.1071 | 71.3651 |
Translational Efficiency | 1.372 | 1.4187 | 1.0251 | 1.3245 | 1.0548 | 1.1687 | 1.2073 | 1.1928 | 1.1871 | 1.0308 |
Dataset | Hit |
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Protein Concentration | ✔ |
Protein Localization | ✘ |
Gene Expression | ✘ |
Translational Efficiency | ✘ |
Temp | Actin Patch (Sac6-tdTomato) | Cortical Patch (Sla1-GFP) | Late Endosome (Snf7-GFP) | Vacuole (Vph1-GFP) |
---|---|---|---|---|
37℃ | ||||
RT |
Gene / Allele | Actin Patch (Sac6-tdTomato) | Cortical Patch (Sla1-GFP) | Late Endosome (Snf7-GFP) | Vacuole (Sac6-tdTomato) |
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Gene | Images |
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Gene | Images |
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