Standard name | |
---|---|
Human Ortholog | |
Description | Conserved zinc-finger domain protein involved in pre-mRNA splicing; critical for splicing of nearly all intron-containing genes; required for assembly of U4 snRNA into the U4/U6 particle |
ensLOC | DeepLoc | |||||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Localization | WT1 | WT2 | WT3 | RAP60 | RAP140 | RAP220 | RAP300 | RAP380 | RAP460 | RAP540 | RAP620 | RAP700 | HU80 | HU120 | HU160 | rpd3Δ_1 | rpd3Δ_2 | rpd3Δ_3 | WT1 | WT2 | WT3 | AF100 | AF140 | AF180 |
Cortical Patches | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Bud | 1 | 0 | 0 | 1 | 1 | 4 | 3 | 2 | 5 | 6 | 3 | 5 | 0 | 0 | 0 | 3 | 0 | 0 | 0 | 0 | 3 | 3 | 5 | 6 |
Bud Neck | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 2 | 3 |
Bud Site | 2 | 0 | 0 | 3 | 3 | 6 | 8 | 12 | 8 | 17 | 10 | 30 | 0 | 0 | 0 | 1 | 0 | 0 | – | – | – | – | – | – |
Cell Periphery | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 2 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Cytoplasm | 11 | 6 | 11 | 14 | 29 | 19 | 29 | 19 | 27 | 17 | 11 | 10 | 39 | 56 | 87 | 36 | 65 | 37 | 3 | 3 | 3 | 18 | 26 | 27 |
Endoplasmic Reticulum | 0 | 0 | 2 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 1 | 11 | 22 | 6 | 0 | 0 | 0 | 1 | 0 | 0 |
Endosome | 0 | 0 | 5 | 1 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 7 | 14 | 8 | 1 | 5 | 3 | 3 | 0 | 4 | 2 | 3 | 3 |
Golgi | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 2 | 0 | 1 | 1 | 0 | 0 | 0 |
Mitochondria | 93 | 25 | 31 | 48 | 51 | 120 | 187 | 176 | 260 | 292 | 182 | 220 | 2 | 4 | 2 | 30 | 30 | 25 | 1 | 1 | 4 | 4 | 7 | 14 |
Nucleus | 118 | 81 | 162 | 78 | 126 | 110 | 155 | 176 | 272 | 245 | 153 | 191 | 107 | 163 | 175 | 197 | 273 | 196 | 128 | 90 | 152 | 127 | 176 | 161 |
Nuclear Periphery | 0 | 0 | 0 | 0 | 0 | 2 | 2 | 0 | 1 | 1 | 1 | 3 | 0 | 0 | 1 | 0 | 2 | 0 | 0 | 1 | 2 | 0 | 0 | 0 |
Nucleolus | 0 | 1 | 1 | 0 | 0 | 1 | 2 | 1 | 4 | 9 | 8 | 9 | 0 | 0 | 0 | 0 | 0 | 0 | 3 | 1 | 2 | 1 | 3 | 5 |
Peroxisomes | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
SpindlePole | 1 | 0 | 3 | 0 | 2 | 0 | 0 | 0 | 0 | 2 | 0 | 2 | 3 | 5 | 2 | 4 | 6 | 0 | 5 | 1 | 5 | 11 | 11 | 20 |
Vac/Vac Membrane | 11 | 17 | 6 | 7 | 9 | 4 | 9 | 5 | 12 | 12 | 5 | 3 | 12 | 9 | 17 | 17 | 26 | 28 | 19 | 13 | 38 | 30 | 42 | 48 |
Unique Cell Count | 167 | 106 | 200 | 109 | 185 | 184 | 268 | 272 | 393 | 382 | 229 | 276 | 160 | 243 | 287 | 259 | 377 | 266 | 170 | 117 | 222 | 202 | 284 | 299 |
Labelled Cell Count | 237 | 130 | 223 | 153 | 222 | 267 | 395 | 391 | 590 | 601 | 373 | 473 | 173 | 253 | 294 | 300 | 431 | 297 | 170 | 117 | 222 | 202 | 284 | 299 |
Screen | WT1 | WT2 | WT3 | RAP60 | RAP140 | RAP220 | RAP300 | RAP380 | RAP460 | RAP540 | RAP620 | RAP700 | HU80 | HU120 | HU160 | rpd3Δ_1 | rpd3Δ_2 | rpd3Δ_3 | AF100 | AF140 | AF180 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Mean Cell GFP Intensity (1e-4) | 3.5 | 4.6 | 4.3 | 4.3 | 4.0 | 3.4 | 3.6 | 3.6 | 3.5 | 3.2 | 3.2 | 3.2 | 5.8 | 5.2 | 5.2 | 5.7 | 5.7 | 5.5 | 5.6 | 5.7 | 5.8 |
Std Deviation (1e-4) | 0.6 | 0.8 | 1.0 | 2.2 | 1.1 | 1.4 | 1.5 | 1.9 | 1.4 | 1.1 | 1.3 | 1.2 | 1.6 | 1.1 | 1.2 | 1.3 | 1.5 | 1.0 | 1.1 | 1.2 | 1.4 |
Intensity Change (Log2) | – | – | – | -0.02 | -0.11 | -0.33 | -0.26 | -0.25 | -0.3 | -0.42 | -0.45 | -0.42 | 0.42 | 0.28 | 0.27 | 0.4 | 0.41 | 0.34 | 0.37 | 0.41 | 0.42 |
Localization | RAP60 | RAP140 | RAP220 | RAP300 | RAP380 | RAP460 | RAP540 | RAP620 | RAP700 | HU80 | HU120 | HU160 | rpd3Δ_1 | rpd3Δ_2 | rpd3Δ_3 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Actin | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – |
Bud | – | – | – | – | – | – | – | – | – | – | – | – | 0 | 0 | 0 |
Bud Neck | – | – | – | – | – | – | – | – | – | – | – | – | 0 | 0 | 0 |
Bud Site | – | – | – | – | – | – | – | – | – | – | – | – | 0 | 0 | 0 |
Cell Periphery | – | – | – | – | – | – | – | – | – | – | – | – | 0 | 0 | 0 |
Cyto | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – |
Endoplasmic Reticulum | – | – | – | – | – | – | – | – | – | – | – | – | 0 | 0 | 0 |
Endosome | – | – | – | – | – | – | – | – | – | – | – | – | 0 | 0 | 0 |
Golgi | – | – | – | – | – | – | – | – | – | – | – | – | 0 | 0 | 0 |
Mitochondria | – | – | – | – | – | – | – | – | – | – | – | – | 0 | 0 | 0 |
Nuclear Periphery | – | – | – | – | – | – | – | – | – | – | – | – | 0 | 0 | 0 |
Nuc | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – |
Nucleolus | – | – | – | – | – | – | – | – | – | – | – | – | 0 | 0 | 0 |
Peroxisomes | – | – | – | – | – | – | – | – | – | – | – | – | 0 | 0 | 0 |
SpindlePole | – | – | – | – | – | – | – | – | – | – | – | – | 0 | 0 | 0 |
Vac | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – |
Cortical Patches | – | – | – | – | – | – | – | – | – | – | – | – | 0 | 0 | 0 |
Cytoplasm | – | – | – | – | – | – | – | – | – | – | – | – | 0 | 0 | 0 |
Nucleus | – | – | – | – | – | – | – | – | – | – | – | – | 0 | 0 | 0 |
Vacuole | – | – | – | – | – | – | – | – | – | – | – | – | 1.7 | 1.9 | 3.1 |
R1 | R2 | R3 | ||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
G1 Pre-START | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | G1 Pre-START | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | G1 Pre-START | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | |
Concentration | 1.1207 | 1.8318 | 1.6506 | 1.1944 | 1.4663 | 1.563 | 0.6411 | 1.0314 | 0.8458 | 0.8713 | 0.686 | 0.7822 | -0.4282 | 0.3548 | -0.3053 | 0.298 | -0.3983 | -0.1787 |
Actin | 0.0023 | 0 | 0.0113 | 0.0001 | 0.0001 | 0.0001 | 0.0077 | 0 | 0.0078 | 0.0024 | 0.0164 | 0.009 | 0.0003 | 0 | 0 | 0.0006 | 0.0001 | 0.0001 |
Bud | 0.0001 | 0 | 0.0001 | 0.0002 | 0 | 0 | 0.0006 | 0 | 0.0006 | 0.0005 | 0.0004 | 0.0001 | 0.0001 | 0 | 0 | 0.0001 | 0 | 0 |
Bud Neck | 0.0004 | 0.0003 | 0.0003 | 0.0004 | 0.0007 | 0.0012 | 0.0148 | 0.0001 | 0.0011 | 0.0029 | 0.0017 | 0.001 | 0.0035 | 0.0001 | 0.0001 | 0.0003 | 0.0003 | 0.0009 |
Bud Periphery | 0.0002 | 0 | 0.0001 | 0.0001 | 0 | 0 | 0.0013 | 0 | 0.0014 | 0.0014 | 0.001 | 0.0002 | 0.0001 | 0 | 0 | 0.0003 | 0 | 0 |
Bud Site | 0.0004 | 0.0002 | 0.0004 | 0.0001 | 0.0001 | 0.0001 | 0.0034 | 0.0001 | 0.0016 | 0.0069 | 0.0042 | 0.0001 | 0.0005 | 0 | 0 | 0.0003 | 0 | 0 |
Cell Periphery | 0 | 0 | 0 | 0 | 0 | 0 | 0.0003 | 0 | 0.0001 | 0.0011 | 0.0002 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Cytoplasm | 0.0132 | 0.021 | 0.009 | 0.0041 | 0.0071 | 0.0036 | 0.0054 | 0.0104 | 0.0052 | 0.0005 | 0.0067 | 0.0045 | 0.0126 | 0.0021 | 0.0039 | 0.0038 | 0.0162 | 0.002 |
Cytoplasmic Foci | 0.0034 | 0.0005 | 0.0009 | 0.0003 | 0.0004 | 0.0006 | 0.0101 | 0.0003 | 0.0039 | 0.0035 | 0.0044 | 0.001 | 0.0017 | 0.0001 | 0.0002 | 0.0012 | 0.0001 | 0.0001 |
Eisosomes | 0.0001 | 0 | 0.0001 | 0 | 0 | 0 | 0.0001 | 0 | 0.0001 | 0.0002 | 0.0002 | 0.0001 | 0 | 0 | 0 | 0 | 0 | 0 |
Endoplasmic Reticulum | 0.0005 | 0.0003 | 0.0005 | 0.0002 | 0.0007 | 0.0001 | 0.0014 | 0.0003 | 0.0008 | 0.0002 | 0.0007 | 0.0009 | 0.0007 | 0.0001 | 0.0001 | 0.0006 | 0.0017 | 0.0002 |
Endosome | 0.0025 | 0.0004 | 0.0006 | 0.0003 | 0.001 | 0.0002 | 0.0091 | 0.0003 | 0.0038 | 0.0042 | 0.0084 | 0.003 | 0.0026 | 0.0001 | 0.0001 | 0.0017 | 0.0007 | 0.0003 |
Golgi | 0.0008 | 0 | 0.0002 | 0 | 0 | 0 | 0.002 | 0 | 0.0013 | 0.0034 | 0.0048 | 0.001 | 0.0007 | 0 | 0 | 0.0001 | 0 | 0 |
Lipid Particles | 0.0079 | 0 | 0.0002 | 0 | 0.0003 | 0.0002 | 0.003 | 0 | 0.0028 | 0.0097 | 0.0258 | 0.0007 | 0.0031 | 0 | 0 | 0.0002 | 0 | 0.0001 |
Mitochondria | 0.0019 | 0.0003 | 0.0004 | 0.0002 | 0.0003 | 0.0001 | 0.0045 | 0.0002 | 0.0039 | 0.021 | 0.0117 | 0.0026 | 0.0007 | 0.0001 | 0.0001 | 0.0037 | 0.0001 | 0.0001 |
None | 0.073 | 0.0355 | 0.0577 | 0.003 | 0.027 | 0.0329 | 0.0105 | 0.0194 | 0.0116 | 0.0003 | 0.0243 | 0.0046 | 0.0261 | 0.0154 | 0.006 | 0.0024 | 0.0019 | 0.0077 |
Nuclear Periphery | 0.0081 | 0.0062 | 0.0127 | 0.0078 | 0.0093 | 0.0026 | 0.0109 | 0.0108 | 0.0097 | 0.0014 | 0.0268 | 0.0113 | 0.0086 | 0.0073 | 0.0022 | 0.0114 | 0.0182 | 0.0061 |
Nucleolus | 0.0071 | 0.0106 | 0.0063 | 0.0085 | 0.0161 | 0.0131 | 0.0128 | 0.0057 | 0.0107 | 0.0111 | 0.0133 | 0.013 | 0.0079 | 0.0049 | 0.0055 | 0.0054 | 0.0045 | 0.0102 |
Nucleus | 0.8471 | 0.8827 | 0.8844 | 0.9346 | 0.9157 | 0.9234 | 0.8573 | 0.9403 | 0.9106 | 0.9154 | 0.8117 | 0.93 | 0.9175 | 0.9615 | 0.9711 | 0.9379 | 0.9502 | 0.9619 |
Peroxisomes | 0.0048 | 0 | 0.0007 | 0 | 0 | 0 | 0.0021 | 0 | 0.0027 | 0.006 | 0.0063 | 0.0004 | 0.0026 | 0 | 0 | 0.0001 | 0 | 0 |
Punctate Nuclear | 0.025 | 0.0411 | 0.0137 | 0.0398 | 0.0201 | 0.0216 | 0.0342 | 0.0113 | 0.018 | 0.0047 | 0.0286 | 0.016 | 0.0101 | 0.0081 | 0.0106 | 0.0278 | 0.0052 | 0.0101 |
Vacuole | 0.0007 | 0.0007 | 0.0003 | 0.0002 | 0.0007 | 0.0001 | 0.0068 | 0.0005 | 0.0017 | 0.0023 | 0.0012 | 0.0002 | 0.0006 | 0.0001 | 0.0001 | 0.001 | 0.0003 | 0.0001 |
Vacuole Periphery | 0.0005 | 0.0001 | 0.0001 | 0.0001 | 0.0002 | 0 | 0.0016 | 0.0003 | 0.0007 | 0.0007 | 0.0012 | 0.0004 | 0.0001 | 0.0001 | 0 | 0.0009 | 0.0001 | 0.0001 |
R1 | R2 | |||||||||
---|---|---|---|---|---|---|---|---|---|---|
G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | |
Gene Expression | 22.9364 | 18.3069 | 24.4521 | 28.7017 | 31.3311 | 20.4676 | 24.9886 | 21.2382 | 22.4332 | 26.348 |
Translational Efficiency | 0.7326 | 1.0075 | 0.8232 | 0.5655 | 0.4704 | 0.8758 | 0.7672 | 0.8934 | 0.7541 | 0.7029 |
Dataset | Hit |
---|---|
Protein Concentration | ✘ |
Protein Localization | ✘ |
Gene Expression | ✘ |
Translational Efficiency | ✘ |
Temp | Actin Patch (Sac6-tdTomato) | Cortical Patch (Sla1-GFP) | Late Endosome (Snf7-GFP) | Vacuole (Vph1-GFP) |
---|---|---|---|---|
37℃ | ||||
RT |
Gene / Allele | Actin Patch (Sac6-tdTomato) | Cortical Patch (Sla1-GFP) | Late Endosome (Snf7-GFP) | Vacuole (Sac6-tdTomato) |
---|
Gene | Images |
---|
Gene | Images |
---|