Standard name | |
---|---|
Human Ortholog | |
Description | v-SNARE binding protein; facilitates specific protein retrieval from a late endosome to the Golgi; modulates arginine uptake, possible role in mediating pH homeostasis between the vacuole and plasma membrane H(+)-ATPase; contributes to prion curing; preferentially expressed after severe ethanol stress |
ensLOC | DeepLoc | |||||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Localization | WT1 | WT2 | WT3 | RAP60 | RAP140 | RAP220 | RAP300 | RAP380 | RAP460 | RAP540 | RAP620 | RAP700 | HU80 | HU120 | HU160 | rpd3Δ_1 | rpd3Δ_2 | rpd3Δ_3 | WT1 | WT2 | WT3 | AF100 | AF140 | AF180 |
Cortical Patches | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 1 | 0 | 1 | 0 | 0 | 6 | 0 | 3 | 3 |
Bud | 1 | 2 | 0 | 3 | 5 | 7 | 26 | 11 | 13 | 15 | 15 | 12 | 0 | 0 | 2 | 0 | 2 | 0 | 0 | 0 | 4 | 0 | 8 | 30 |
Bud Neck | 0 | 0 | 1 | 0 | 0 | 0 | 1 | 1 | 2 | 4 | 0 | 1 | 1 | 0 | 3 | 0 | 0 | 0 | 1 | 0 | 1 | 0 | 2 | 2 |
Bud Site | 0 | 0 | 0 | 0 | 0 | 1 | 2 | 0 | 1 | 6 | 2 | 4 | 0 | 0 | 0 | 0 | 0 | 0 | – | – | – | – | – | – |
Cell Periphery | 1 | 0 | 1 | 6 | 5 | 2 | 2 | 2 | 3 | 1 | 2 | 2 | 2 | 1 | 2 | 5 | 3 | 2 | 0 | 0 | 0 | 0 | 1 | 0 |
Cytoplasm | 93 | 137 | 320 | 237 | 324 | 362 | 482 | 429 | 339 | 375 | 276 | 260 | 383 | 469 | 516 | 203 | 126 | 129 | 103 | 129 | 253 | 223 | 329 | 257 |
Endoplasmic Reticulum | 1 | 2 | 1 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 1 | 0 | 0 | 2 | 1 | 8 | 4 | 9 | 2 | 0 | 2 | 0 | 1 | 0 |
Endosome | 0 | 1 | 3 | 0 | 7 | 5 | 3 | 6 | 2 | 0 | 0 | 0 | 1 | 0 | 0 | 11 | 4 | 7 | 3 | 1 | 8 | 0 | 6 | 25 |
Golgi | 0 | 0 | 3 | 1 | 1 | 1 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 9 | 3 | 4 | 1 | 0 | 4 | 0 | 2 | 9 |
Mitochondria | 23 | 16 | 8 | 16 | 47 | 155 | 246 | 194 | 203 | 262 | 289 | 248 | 1 | 0 | 0 | 5 | 2 | 6 | 19 | 4 | 38 | 3 | 20 | 15 |
Nucleus | 1 | 0 | 0 | 0 | 1 | 1 | 6 | 3 | 3 | 8 | 2 | 4 | 0 | 0 | 2 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 1 | 1 |
Nuclear Periphery | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Nucleolus | 1 | 0 | 2 | 1 | 4 | 1 | 3 | 2 | 2 | 0 | 0 | 1 | 0 | 0 | 0 | 15 | 4 | 5 | 0 | 0 | 0 | 0 | 0 | 1 |
Peroxisomes | 0 | 0 | 1 | 1 | 0 | 0 | 0 | 1 | 1 | 0 | 0 | 3 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 1 | 2 |
SpindlePole | 0 | 0 | 0 | 1 | 4 | 4 | 14 | 6 | 13 | 7 | 4 | 12 | 0 | 0 | 0 | 2 | 1 | 1 | 4 | 3 | 5 | 0 | 12 | 25 |
Vac/Vac Membrane | 2 | 0 | 4 | 1 | 4 | 8 | 10 | 13 | 13 | 7 | 9 | 8 | 1 | 3 | 1 | 38 | 18 | 23 | 2 | 2 | 4 | 1 | 6 | 8 |
Unique Cell Count | 107 | 145 | 334 | 244 | 348 | 436 | 609 | 544 | 455 | 526 | 453 | 430 | 385 | 474 | 521 | 248 | 149 | 157 | 142 | 147 | 340 | 237 | 405 | 393 |
Labelled Cell Count | 123 | 158 | 344 | 267 | 402 | 547 | 798 | 670 | 595 | 685 | 601 | 556 | 389 | 476 | 528 | 297 | 168 | 188 | 142 | 147 | 340 | 237 | 405 | 393 |
Screen | WT1 | WT2 | WT3 | RAP60 | RAP140 | RAP220 | RAP300 | RAP380 | RAP460 | RAP540 | RAP620 | RAP700 | HU80 | HU120 | HU160 | rpd3Δ_1 | rpd3Δ_2 | rpd3Δ_3 | AF100 | AF140 | AF180 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Mean Cell GFP Intensity (1e-4) | 3.3 | 4.0 | 4.9 | 4.6 | 4.7 | 3.6 | 3.4 | 3.9 | 3.2 | 2.9 | 2.6 | 2.7 | 5.4 | 5.7 | 5.0 | 11.6 | 9.9 | 10.4 | 5.2 | 5.5 | 6.4 |
Std Deviation (1e-4) | 1.9 | 1.6 | 5.5 | 4.9 | 6.2 | 4.2 | 2.4 | 3.8 | 2.7 | 1.3 | 1.6 | 1.2 | 1.1 | 5.2 | 1.1 | 10.8 | 8.1 | 8.7 | 1.2 | 1.9 | 2.4 |
Intensity Change (Log2) | – | – | – | -0.1 | -0.05 | -0.43 | -0.54 | -0.33 | -0.59 | -0.74 | -0.89 | -0.86 | 0.14 | 0.22 | 0.04 | 1.25 | 1.02 | 1.1 | 0.08 | 0.17 | 0.39 |
Localization | RAP60 | RAP140 | RAP220 | RAP300 | RAP380 | RAP460 | RAP540 | RAP620 | RAP700 | HU80 | HU120 | HU160 | rpd3Δ_1 | rpd3Δ_2 | rpd3Δ_3 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Actin | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – |
Bud | – | – | – | – | – | – | – | – | – | – | – | – | 0 | 0 | 0 |
Bud Neck | – | – | – | – | – | – | – | – | – | – | – | – | 0 | 0 | 0 |
Bud Site | – | – | – | – | – | – | – | – | – | – | – | – | 0 | 0 | 0 |
Cell Periphery | – | – | – | – | – | – | – | – | – | – | – | – | 0 | 0 | 0 |
Cyto | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – |
Endoplasmic Reticulum | – | – | – | – | – | – | – | – | – | – | – | – | 0 | 0 | 0 |
Endosome | – | – | – | – | – | – | – | – | – | – | – | – | 0 | 0 | 0 |
Golgi | – | – | – | – | – | – | – | – | – | – | – | – | 0 | 0 | 0 |
Mitochondria | – | – | – | – | – | – | – | – | – | – | – | – | 0 | 0 | 0 |
Nuclear Periphery | – | – | – | – | – | – | – | – | – | – | – | – | 0 | 0 | 0 |
Nuc | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – |
Nucleolus | – | – | – | – | – | – | – | – | – | – | – | – | 0 | 0 | 0 |
Peroxisomes | – | – | – | – | – | – | – | – | – | – | – | – | 0 | 0 | 0 |
SpindlePole | – | – | – | – | – | – | – | – | – | – | – | – | 0 | 0 | 0 |
Vac | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – |
Cortical Patches | – | – | – | – | – | – | – | – | – | – | – | – | 0 | 0 | 0 |
Cytoplasm | – | – | – | – | – | – | – | – | – | – | – | – | 0 | 0 | 0 |
Nucleus | – | – | – | – | – | – | – | – | – | – | – | – | 0 | 0 | 0 |
Vacuole | – | – | – | – | – | – | – | – | – | – | – | – | 6.5 | 5.3 | 6.1 |
R1 | R2 | R3 | ||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
G1 Pre-START | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | G1 Pre-START | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | G1 Pre-START | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | |
Concentration | 0.6025 | 1.144 | 0.6868 | 0.6822 | 0.2921 | 0.8184 | 0.1466 | -0.6882 | -0.6082 | -0.5556 | -0.7749 | -0.7033 | -0.5073 | -0.988 | -0.8275 | -0.8254 | -0.7471 | -1.0356 |
Actin | 0.047 | 0.0001 | 0.0026 | 0.042 | 0.0021 | 0.0019 | 0.0769 | 0.0066 | 0.0413 | 0.0009 | 0.0001 | 0.0009 | 0.039 | 0.0003 | 0.0088 | 0.0133 | 0.0274 | 0.0056 |
Bud | 0.0015 | 0 | 0.0003 | 0.0002 | 0.0004 | 0.0013 | 0.0025 | 0.0042 | 0.0094 | 0.0007 | 0 | 0 | 0.0038 | 0.0037 | 0.0017 | 0.004 | 0.0008 | 0.0005 |
Bud Neck | 0.0101 | 0 | 0.0003 | 0.0027 | 0.0004 | 0.0002 | 0.0034 | 0.0001 | 0.0008 | 0.0003 | 0 | 0.0003 | 0.0067 | 0.0001 | 0.0036 | 0.0007 | 0.0486 | 0.0007 |
Bud Periphery | 0.0039 | 0 | 0.0005 | 0.0006 | 0.0004 | 0.0025 | 0.0054 | 0.0051 | 0.0054 | 0.0014 | 0 | 0.0001 | 0.0155 | 0.0047 | 0.0075 | 0.0108 | 0.0011 | 0.0016 |
Bud Site | 0.0045 | 0.0001 | 0.0052 | 0.0003 | 0.0081 | 0.0002 | 0.0147 | 0.0069 | 0.0218 | 0.0005 | 0 | 0.0001 | 0.0119 | 0.0041 | 0.0078 | 0.0023 | 0.0193 | 0.0006 |
Cell Periphery | 0.0005 | 0 | 0.0001 | 0.0003 | 0.0002 | 0 | 0.0005 | 0.0003 | 0.0003 | 0.0001 | 0 | 0 | 0.0014 | 0.0002 | 0.0005 | 0.0002 | 0.0006 | 0.0001 |
Cytoplasm | 0.0156 | 0.0337 | 0.0363 | 0.0188 | 0.0277 | 0.0583 | 0.0557 | 0.0952 | 0.0873 | 0.0293 | 0.0295 | 0.1721 | 0.0345 | 0.0681 | 0.0909 | 0.0473 | 0.0405 | 0.0979 |
Cytoplasmic Foci | 0.0155 | 0.0068 | 0.0053 | 0.0017 | 0.0139 | 0.0113 | 0.0378 | 0.0063 | 0.0066 | 0.0294 | 0.0052 | 0.0107 | 0.0328 | 0.0045 | 0.017 | 0.0254 | 0.021 | 0.0248 |
Eisosomes | 0.001 | 0.0001 | 0.0003 | 0.0028 | 0.0002 | 0.0001 | 0.0022 | 0.0004 | 0.0002 | 0.0002 | 0 | 0.0001 | 0.0006 | 0.0001 | 0.0005 | 0.0002 | 0.0004 | 0.0001 |
Endoplasmic Reticulum | 0.0019 | 0.0002 | 0.0005 | 0.0008 | 0.0016 | 0.0002 | 0.0048 | 0.0006 | 0.0007 | 0.0012 | 0.0003 | 0.0018 | 0.0024 | 0.0005 | 0.0015 | 0.0007 | 0.0049 | 0.001 |
Endosome | 0.0064 | 0.0006 | 0.001 | 0.0025 | 0.0159 | 0.0007 | 0.0221 | 0.0016 | 0.001 | 0.0074 | 0.0726 | 0.0037 | 0.0194 | 0.0005 | 0.0129 | 0.0019 | 0.0528 | 0.0043 |
Golgi | 0.0034 | 0.0001 | 0.0005 | 0.0032 | 0.0013 | 0.0002 | 0.0177 | 0.0031 | 0.0015 | 0.0019 | 0.0203 | 0.0012 | 0.011 | 0.0001 | 0.007 | 0.0018 | 0.0388 | 0.0027 |
Lipid Particles | 0.0059 | 0.0005 | 0.0027 | 0.0036 | 0.0034 | 0.0003 | 0.039 | 0.0004 | 0.0011 | 0.0055 | 0.0011 | 0.003 | 0.0274 | 0.0004 | 0.0084 | 0.0065 | 0.0203 | 0.003 |
Mitochondria | 0.0112 | 0.0001 | 0.0004 | 0.0025 | 0.0005 | 0.0002 | 0.0363 | 0.0029 | 0.0014 | 0.0008 | 0.0013 | 0.0111 | 0.0116 | 0.0003 | 0.003 | 0.0022 | 0.0373 | 0.0015 |
None | 0.8429 | 0.9384 | 0.9364 | 0.9076 | 0.9008 | 0.9099 | 0.5965 | 0.863 | 0.8125 | 0.8756 | 0.8668 | 0.7789 | 0.7214 | 0.9097 | 0.8054 | 0.8338 | 0.6501 | 0.8419 |
Nuclear Periphery | 0.0024 | 0.0001 | 0.0007 | 0.0024 | 0.0097 | 0.0002 | 0.0113 | 0.0002 | 0.0003 | 0.0058 | 0.0002 | 0.0022 | 0.0111 | 0.0002 | 0.0027 | 0.0011 | 0.0111 | 0.0005 |
Nucleolus | 0.0011 | 0.0001 | 0.0006 | 0.0009 | 0.0006 | 0.0002 | 0.0013 | 0.0003 | 0.0004 | 0.0033 | 0 | 0.0001 | 0.0022 | 0.0004 | 0.0012 | 0.0013 | 0.0058 | 0.0003 |
Nucleus | 0.0017 | 0.0002 | 0.0006 | 0.0007 | 0.0019 | 0.008 | 0.01 | 0.0005 | 0.0011 | 0.0131 | 0.0001 | 0.0101 | 0.0029 | 0.0006 | 0.0039 | 0.0042 | 0.0014 | 0.0008 |
Peroxisomes | 0.0164 | 0.0003 | 0.0022 | 0.0036 | 0.0008 | 0.0033 | 0.0467 | 0.001 | 0.0048 | 0.0117 | 0.0002 | 0.0014 | 0.0323 | 0.0003 | 0.0111 | 0.0296 | 0.0096 | 0.0056 |
Punctate Nuclear | 0.0056 | 0.0183 | 0.0031 | 0.0023 | 0.009 | 0.0006 | 0.0102 | 0.0005 | 0.0013 | 0.0092 | 0.0002 | 0.0011 | 0.0049 | 0.0006 | 0.0025 | 0.0115 | 0.0016 | 0.006 |
Vacuole | 0.001 | 0.0001 | 0.0003 | 0.0002 | 0.0007 | 0.0006 | 0.0031 | 0.0006 | 0.0006 | 0.0014 | 0.001 | 0.0011 | 0.0057 | 0.0006 | 0.0014 | 0.0008 | 0.0039 | 0.0006 |
Vacuole Periphery | 0.0005 | 0 | 0.0001 | 0.0003 | 0.0004 | 0.0001 | 0.0019 | 0.0001 | 0.0001 | 0.0004 | 0.0008 | 0.0003 | 0.0015 | 0.0001 | 0.0006 | 0.0003 | 0.0027 | 0.0002 |
R1 | R2 | |||||||||
---|---|---|---|---|---|---|---|---|---|---|
G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | |
Gene Expression | 19.2402 | 52.7987 | 11.8724 | 15.5169 | 13.9232 | 16.0992 | 43.0718 | 35.7581 | 29.9217 | 16.7471 |
Translational Efficiency | 0.6795 | 0.7608 | 0.6625 | 0.9425 | 0.9761 | 1.1024 | 0.9745 | 0.8621 | 0.7634 | 0.8966 |
Dataset | Hit |
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Protein Concentration | ✘ |
Protein Localization | ✘ |
Gene Expression | ✔ |
Translational Efficiency | ✘ |
Temp | Actin Patch (Sac6-tdTomato) | Cortical Patch (Sla1-GFP) | Late Endosome (Snf7-GFP) | Vacuole (Vph1-GFP) |
---|---|---|---|---|
37℃ | ||||
RT |
Gene / Allele | Actin Patch (Sac6-tdTomato) | Cortical Patch (Sla1-GFP) | Late Endosome (Snf7-GFP) | Vacuole (Sac6-tdTomato) |
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Gene | Images |
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Gene | Images |
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