Standard name
Human Ortholog
Description Essential component of CPF (cleavage and polyadenylation factor); involved in 3' end formation of snoRNA and mRNA; interacts directly with Pta1p; relocalizes to the cytosol in response to hypoxia; similar to mammalian Cleavage-Stimulation Factor CstF-64

Micrographs

ensLOC DeepLoc
Localization WT1 WT2 WT3 RAP60 RAP140 RAP220 RAP300 RAP380 RAP460 RAP540 RAP620 RAP700 HU80 HU120 HU160 rpd3Δ_1 rpd3Δ_2 rpd3Δ_3 WT1 WT2 WT3 AF100 AF140 AF180
Cortical Patches 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Bud 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Bud Neck 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Bud Site 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Cell Periphery 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Cytoplasm 0 0 0.06 0.07 0 0 0 0.05 0.05 0.05 0 0 0.12 0.14 0.16 0.07 0.05 0.07 0 0 0 0 0 0
Endoplasmic Reticulum 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Endosome 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Golgi 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Mitochondria 0 0 0 0 0 0 0.06 0.05 0 0.11 0.13 0.1 0 0 0 0 0 0 0 0 0 0 0 0
Nucleus 0.94 0.97 0.9 0.87 0.89 0.86 0.79 0.79 0.77 0.69 0.7 0.71 0.87 0.83 0.78 0.89 0.85 0.84 0.92 0.92 0.88 0.81 0.83 0.72
Nuclear Periphery 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Nucleolus 0.13 0.16 0.06 0.12 0.18 0.26 0.31 0.26 0.35 0.43 0.47 0.46 0.07 0 0.07 0 0.07 0.08 0 0 0 0 0.05 0.1
Peroxisomes 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
SpindlePole 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Vac/Vac Membrane 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0.06 0.05 0.11
ensLOC DeepLoc
Localization WT1 WT2 WT3 RAP60 RAP140 RAP220 RAP300 RAP380 RAP460 RAP540 RAP620 RAP700 HU80 HU120 HU160 rpd3Δ_1 rpd3Δ_2 rpd3Δ_3 WT1 WT2 WT3 AF100 AF140 AF180
Cortical Patches 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Bud 0 0 0 0 0 0 3 1 1 0 3 1 0 1 0 1 0 0 0 1 0 1 3 5
Bud Neck 0 0 1 0 0 0 4 0 3 1 5 3 0 0 0 0 0 0 0 0 0 0 0 1
Bud Site 0 0 0 0 2 5 6 6 2 6 11 8 0 0 0 0 0 0
Cell Periphery 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
Cytoplasm 2 3 9 10 8 12 16 19 14 18 11 9 29 56 75 17 16 21 1 0 0 1 1 0
Endoplasmic Reticulum 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 1 4 0 0 0 0 0 1
Endosome 0 0 0 0 0 0 0 0 0 0 0 0 0 2 3 0 4 4 2 0 0 3 3 1
Golgi 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 3 1 1 0 0 2 1 0
Mitochondria 9 1 2 0 1 13 25 17 10 42 40 34 0 0 1 1 13 3 0 0 3 1 1 5
Nucleus 224 123 137 117 172 263 323 275 222 260 221 240 216 333 369 203 283 254 218 125 138 151 244 247
Nuclear Periphery 2 0 0 1 1 4 4 2 1 2 3 3 1 2 2 0 5 2 0 0 0 1 0 0
Nucleolus 30 20 9 16 35 79 129 89 101 163 148 156 17 11 32 9 23 24 8 3 6 8 15 33
Peroxisomes 0 0 0 0 0 0 0 0 0 0 1 0 0 0 3 0 0 0 0 0 0 0 0 0
SpindlePole 0 0 0 0 0 0 0 0 0 0 0 0 1 5 13 1 2 0 1 0 1 1 3 6
Vac/Vac Membrane 3 0 2 1 1 2 3 9 2 8 5 4 0 2 4 5 10 7 2 4 2 10 13 37
Unique Cell Count 238 127 153 135 193 306 411 349 288 378 317 337 248 399 475 228 332 303 238 136 157 187 295 345
Labelled Cell Count 271 147 160 145 220 378 514 418 356 500 449 458 264 412 502 241 360 320 238 136 157 187 295 345


Nucleus

(Huh et al. Nature 2003 425:686)
Screen WT1 WT2 WT3 RAP60 RAP140 RAP220 RAP300 RAP380 RAP460 RAP540 RAP620 RAP700 HU80 HU120 HU160 rpd3Δ_1 rpd3Δ_2 rpd3Δ_3 AF100 AF140 AF180
Mean Cell GFP Intensity (1e-4) 8.8 10.8 10.0 9.3 9.0 8.1 7.6 8.3 7.9 7.9 7.2 7.3 10.4 10.8 9.9 10.9 10.2 10.5 9.6 10.9 11.2
Std Deviation (1e-4) 1.9 2.9 3.8 2.6 3.3 3.1 2.7 3.5 3.8 3.9 3.1 2.9 2.8 3.0 3.0 2.7 2.4 2.4 2.1 2.1 2.1
Intensity Change (Log2) -0.11 -0.16 -0.31 -0.39 -0.27 -0.34 -0.34 -0.47 -0.46 0.06 0.1 -0.02 0.13 0.03 0.07 -0.07 0.12 0.16


Localization RAP60 RAP140 RAP220 RAP300 RAP380 RAP460 RAP540 RAP620 RAP700 HU80 HU120 HU160 rpd3Δ_1 rpd3Δ_2 rpd3Δ_3
Cortical Patches 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Bud 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Bud Neck 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Bud Site 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Cell Periphery 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Cytoplasm 0.5 -0.7 -0.9 -1.0 -0.2 -0.5 -0.5 -1.2 -1.8 1.9 2.7 3.1 0.6 -0.5 0.4
Endoplasmic Reticulum 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Endosome 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Golgi 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Mitochondria 0 0 1.7 2.4 1.9 0 3.7 4.0 3.5 0 0 0 0 0 0
Nucleus -0.8 -0.1 -1.1 -3.0 -2.9 -3.2 -5.0 -4.7 -4.5 -0.7 -1.8 -3.2 -0.2 -1.3 -1.6
Nuclear Periphery 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Nucleolus 1.8 3.4 5.1 6.3 5.1 6.7 8.3 8.8 8.8 0.4 -1.8 0.4 -0.9 0.4 0.8
Peroxisomes 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
SpindlePole 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Vacuole 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0

Images

Circle plot not available

Protein Concentration and Protein Localization Data

R1 R2 R3
G1 Pre-START G1 Post-START S/G2 Metaphase Anaphase Telophase G1 Pre-START G1 Post-START S/G2 Metaphase Anaphase Telophase G1 Pre-START G1 Post-START S/G2 Metaphase Anaphase Telophase
Concentration 8.6942 8.9067 8.1227 7.5094 7.1785 7.8324 5.0579 6.7707 6.3906 6.1166 5.8348 5.9215 6.8412 7.2815 6.1948 6.6719 5.6618 6.5539
Actin 0.0059 0 0.0001 0 0 0 0.0434 0.0006 0.0014 0 0.0401 0.0007 0.0017 0.0002 0.0008 0.0006 0.0004 0.0008
Bud 0.0002 0 0 0 0 0 0.0013 0.001 0.0006 0 0.0071 0.0001 0.0007 0 0.0002 0.0004 0.0003 0.0001
Bud Neck 0.0002 0 0 0 0.0001 0.0004 0.0013 0.0002 0.0002 0 0.0016 0.0005 0.0008 0 0.0014 0.0003 0.0009 0.0004
Bud Periphery 0.0002 0 0 0 0.0001 0 0.0016 0.0004 0.0011 0 0.0428 0.0003 0.0027 0 0.0003 0.0002 0.0003 0.0001
Bud Site 0.0012 0 0.0001 0 0.0001 0 0.008 0.013 0.0029 0 0.0019 0.0002 0.0024 0 0.0026 0.0008 0.0006 0.0001
Cell Periphery 0.0001 0 0 0 0 0 0.0005 0.0001 0.0004 0 0.0038 0.0001 0.0022 0 0.0002 0 0.0002 0
Cytoplasm 0.001 0 0.0004 0 0 0 0.0218 0.0026 0.0007 0 0.0025 0.0003 0.0067 0.0001 0.0023 0.0157 0.008 0.0009
Cytoplasmic Foci 0.0019 0 0.0057 0 0 0 0.0478 0.0015 0.0056 0 0.0108 0.0045 0.0191 0.0003 0.0143 0.0084 0.0108 0.0024
Eisosomes 0 0 0 0 0 0 0.0003 0 0.0001 0 0.0003 0 0.0001 0 0 0 0 0
Endoplasmic Reticulum 0.0002 0 0.0001 0 0 0 0.0066 0 0.0009 0 0.0087 0.0004 0.0015 0 0.0011 0.0007 0.003 0.0007
Endosome 0.0011 0 0.0003 0 0 0 0.0307 0.0005 0.0035 0 0.037 0.015 0.0152 0.0002 0.0093 0.0161 0.0378 0.0036
Golgi 0.0005 0 0.0001 0 0 0 0.0128 0.0004 0.0018 0 0.0154 0.0054 0.0045 0.0001 0.0022 0.003 0.0035 0.0035
Lipid Particles 0.0009 0 0.0005 0 0 0 0.0509 0.0004 0.0021 0 0.0481 0.012 0.0381 0.0001 0.0086 0.0002 0.0236 0.0007
Mitochondria 0.0008 0.0001 0.0001 0.0001 0.0008 0.0001 0.0098 0.0034 0.006 0 0.0141 0.0115 0.0141 0.0001 0.0022 0.001 0.0029 0.0005
None 0.0007 0 0.0006 0 0 0 0.0188 0 0.0009 0 0.0007 0.0001 0.0015 0 0.0007 0.0002 0.0017 0.0001
Nuclear Periphery 0.0021 0.0006 0.0008 0.0002 0.0015 0.0004 0.0285 0.0002 0.0038 0.0002 0.0139 0.0048 0.0067 0.0012 0.0043 0.0005 0.0104 0.0055
Nucleolus 0.0242 0.0175 0.0094 0.0088 0.1408 0.0909 0.0317 0.0168 0.0137 0.0079 0.1383 0.062 0.0365 0.013 0.0139 0.0656 0.2633 0.0665
Nucleus 0.9519 0.9795 0.9765 0.9909 0.8545 0.9079 0.6393 0.9577 0.9401 0.9918 0.5762 0.8751 0.8163 0.9745 0.9187 0.8841 0.6139 0.9062
Peroxisomes 0.0005 0 0.0001 0 0 0 0.0162 0.0002 0.001 0 0.0015 0.0008 0.0086 0.0001 0.0024 0.0008 0.0016 0.0002
Punctate Nuclear 0.006 0 0.0051 0.0001 0.0016 0.0002 0.0207 0.0001 0.011 0.0001 0.0148 0.0024 0.0102 0.0098 0.0105 0.0007 0.0117 0.0072
Vacuole 0.0004 0.0005 0 0 0.0001 0.0001 0.0044 0.0005 0.0014 0 0.0151 0.0023 0.0066 0 0.0022 0.0006 0.0035 0.0003
Vacuole Periphery 0.0002 0.0016 0 0 0.0002 0 0.0037 0.0004 0.0009 0 0.0054 0.0015 0.0035 0 0.0019 0.0002 0.0015 0.0002

Sequencing Data

R1 R2
G1 Post-START S/G2 Metaphase Anaphase Telophase G1 Post-START S/G2 Metaphase Anaphase Telophase
Gene Expression 20.2895 14.6644 12.5998 15.0093 13.433 12.0807 19.3144 19.2247 16.0837 20.4263
Translational Efficiency 1.4685 1.7462 1.5894 0.996 1.819 2.7199 1.3217 1.2908 1.4453 1.5075

Hit Data

Dataset Hit
Protein Concentration
Protein Localization
Gene Expression
Translational Efficiency
Standard name
Human Ortholog
Description Essential component of CPF (cleavage and polyadenylation factor); involved in 3' end formation of snoRNA and mRNA; interacts directly with Pta1p; relocalizes to the cytosol in response to hypoxia; similar to mammalian Cleavage-Stimulation Factor CstF-64
Localization
Cell Percentages nucleus (100%)
Cell Cycle Regulation No
Subcompartmental Group nucleus-4

Pti1

Pti1


Nearest neighbours ( genes)

correlation threshold

0.6

1.0

0.80


Biological Process (Gene Ontology)

Molecular Function (Gene Ontology)

Cellular Component (Gene Ontology)


Endocytosis
Temp Actin Patch (Sac6-tdTomato) Cortical Patch (Sla1-GFP) Late Endosome (Snf7-GFP) Vacuole (Vph1-GFP)
37℃
RT
Cell Cycle Omics

CYCLoPs (Pti1-GFP)
Gene / Allele Actin Patch (Sac6-tdTomato) Cortical Patch (Sla1-GFP) Late Endosome (Snf7-GFP) Vacuole (Sac6-tdTomato)
Gene Images
Gene Images
Images are not yet available
Images are not yet available