Standard name | |
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Human Ortholog | |
Description | Nonessential protein of unknown function; predicted to be involved in ribosome biogenesis; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm; similar to mammalian BRP16 (Brain protein 16); relative distribution to the nucleus increases upon DNA replication stress |
ensLOC | DeepLoc | |||||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Localization | WT1 | WT2 | WT3 | RAP60 | RAP140 | RAP220 | RAP300 | RAP380 | RAP460 | RAP540 | RAP620 | RAP700 | HU80 | HU120 | HU160 | rpd3Δ_1 | rpd3Δ_2 | rpd3Δ_3 | WT1 | WT2 | WT3 | AF100 | AF140 | AF180 |
Cortical Patches | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 1 | 1 | 1 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 1 |
Bud | 0 | 0 | 1 | 0 | 0 | 2 | 2 | 3 | 2 | 1 | 0 | 3 | 0 | 0 | 0 | 2 | 0 | 0 | 1 | 0 | 0 | 1 | 2 | 3 |
Bud Neck | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Bud Site | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | – | – | – | – | – | – |
Cell Periphery | 1 | 0 | 5 | 3 | 1 | 3 | 10 | 8 | 11 | 13 | 15 | 20 | 0 | 0 | 1 | 9 | 10 | 8 | 0 | 0 | 1 | 0 | 0 | 0 |
Cytoplasm | 280 | 250 | 354 | 195 | 283 | 261 | 285 | 296 | 224 | 210 | 213 | 217 | 225 | 418 | 363 | 378 | 261 | 272 | 267 | 236 | 337 | 170 | 315 | 261 |
Endoplasmic Reticulum | 0 | 0 | 1 | 2 | 5 | 2 | 11 | 20 | 7 | 25 | 8 | 12 | 1 | 2 | 0 | 17 | 5 | 6 | 1 | 0 | 5 | 0 | 1 | 5 |
Endosome | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 1 | 0 | 5 | 7 |
Golgi | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 1 | 0 | 0 | 0 | 1 | 1 | 1 | 1 | 1 | 0 | 0 | 1 | 0 | 3 | 7 |
Mitochondria | 0 | 0 | 1 | 0 | 1 | 15 | 28 | 34 | 43 | 60 | 60 | 46 | 0 | 0 | 0 | 1 | 0 | 2 | 0 | 0 | 3 | 0 | 1 | 0 |
Nucleus | 0 | 0 | 0 | 0 | 2 | 3 | 7 | 4 | 5 | 3 | 3 | 4 | 0 | 3 | 3 | 1 | 3 | 2 | 1 | 1 | 1 | 1 | 5 | 1 |
Nuclear Periphery | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 1 | 0 | 0 | 1 | 0 | 0 | 1 |
Nucleolus | 0 | 0 | 1 | 1 | 0 | 1 | 2 | 0 | 1 | 0 | 2 | 0 | 0 | 0 | 0 | 2 | 1 | 0 | 0 | 0 | 1 | 1 | 0 | 0 |
Peroxisomes | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
SpindlePole | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 |
Vac/Vac Membrane | 1 | 0 | 6 | 27 | 34 | 48 | 73 | 89 | 38 | 53 | 43 | 48 | 1 | 19 | 19 | 24 | 24 | 1 | 2 | 4 | 2 | 3 | 3 | 6 |
Unique Cell Count | 281 | 250 | 362 | 217 | 314 | 324 | 396 | 425 | 313 | 333 | 317 | 312 | 226 | 426 | 371 | 403 | 284 | 280 | 279 | 248 | 363 | 181 | 344 | 303 |
Labelled Cell Count | 282 | 250 | 369 | 228 | 326 | 335 | 419 | 455 | 333 | 368 | 345 | 350 | 227 | 443 | 387 | 436 | 306 | 293 | 279 | 248 | 363 | 181 | 344 | 303 |
Screen | WT1 | WT2 | WT3 | RAP60 | RAP140 | RAP220 | RAP300 | RAP380 | RAP460 | RAP540 | RAP620 | RAP700 | HU80 | HU120 | HU160 | rpd3Δ_1 | rpd3Δ_2 | rpd3Δ_3 | AF100 | AF140 | AF180 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Mean Cell GFP Intensity (1e-4) | 21.2 | 28.6 | 22.0 | 20.3 | 16.2 | 13.4 | 12.4 | 12.0 | 10.7 | 10.4 | 9.8 | 10.4 | 24.2 | 22.7 | 21.0 | 24.5 | 21.0 | 24.7 | 25.9 | 28.3 | 29.5 |
Std Deviation (1e-4) | 4.1 | 6.1 | 3.9 | 3.6 | 2.9 | 2.7 | 2.6 | 2.7 | 2.3 | 2.3 | 2.4 | 2.5 | 4.2 | 4.4 | 3.6 | 7.1 | 5.9 | 6.7 | 5.9 | 6.1 | 6.3 |
Intensity Change (Log2) | – | – | – | -0.11 | -0.44 | -0.72 | -0.82 | -0.87 | -1.03 | -1.07 | -1.16 | -1.08 | 0.14 | 0.05 | -0.06 | 0.16 | -0.06 | 0.17 | 0.24 | 0.37 | 0.43 |
Localization | RAP60 | RAP140 | RAP220 | RAP300 | RAP380 | RAP460 | RAP540 | RAP620 | RAP700 | HU80 | HU120 | HU160 | rpd3Δ_1 | rpd3Δ_2 | rpd3Δ_3 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Cortical Patches | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Bud | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Bud Neck | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Bud Site | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Cell Periphery | 0 | 0 | 0 | 1.1 | 0.5 | 1.8 | 2.1 | 2.6 | 3.4 | 0 | 0 | 0 | 0.9 | 1.8 | 1.3 |
Cytoplasm | -4.2 | -4.3 | -7.4 | -9.8 | -10.4 | -9.7 | -11.7 | -10.7 | -10.2 | 1.7 | 0.3 | 0 | -2.7 | -3.5 | -0.5 |
Endoplasmic Reticulum | 0 | 0 | 0 | 2.8 | 3.8 | 0 | 5.0 | 0 | 3.4 | 0 | 0 | 0 | 3.6 | 0 | 0 |
Endosome | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Golgi | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Mitochondria | 0 | 0 | 3.8 | 4.9 | 5.2 | 7.1 | 8.3 | 8.5 | 7.4 | 0 | 0 | 0 | 0 | 0 | 0 |
Nucleus | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Nuclear Periphery | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Nucleolus | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Peroxisomes | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
SpindlePole | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Vacuole | 5.4 | 5.0 | 6.4 | 7.6 | 8.3 | 5.5 | 6.7 | 6.0 | 6.5 | 0 | 2.2 | 2.6 | 3.1 | 4.1 | 0 |
R1 | R2 | R3 | ||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
G1 Pre-START | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | G1 Pre-START | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | G1 Pre-START | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | |
Concentration | 23.8456 | 27.5815 | 25.7197 | 24.1322 | 24.3338 | 25.1754 | 23.7737 | 29.7194 | 26.252 | 23.5979 | 20.9043 | 26.0823 | 22.0801 | 28.9833 | 26.2432 | 22.3652 | 21.7157 | 25.1952 |
Actin | 0.0005 | 0.0001 | 0.0009 | 0.0001 | 0 | 0.0003 | 0.0072 | 0.0001 | 0.0144 | 0.0019 | 0.0155 | 0.0029 | 0.0273 | 0.0001 | 0.0024 | 0.011 | 0.0075 | 0.0007 |
Bud | 0.0001 | 0.0002 | 0 | 0 | 0.0002 | 0.0001 | 0.0011 | 0.0001 | 0.0008 | 0.0002 | 0.001 | 0.0002 | 0.0002 | 0 | 0.0001 | 0.0005 | 0.0004 | 0.0009 |
Bud Neck | 0.0003 | 0.0001 | 0.0003 | 0.0004 | 0.0004 | 0.0005 | 0.001 | 0.0002 | 0.0031 | 0.0003 | 0.0012 | 0.0009 | 0.0002 | 0.0001 | 0.0002 | 0.0004 | 0.0007 | 0.0009 |
Bud Periphery | 0 | 0 | 0 | 0 | 0 | 0.0001 | 0.0021 | 0 | 0.0007 | 0.0004 | 0.0017 | 0.0001 | 0.0002 | 0 | 0.0001 | 0.0006 | 0.0002 | 0.0005 |
Bud Site | 0.0001 | 0.0003 | 0.0002 | 0.0001 | 0 | 0.0001 | 0.0016 | 0.0001 | 0.0024 | 0.0002 | 0.002 | 0.0007 | 0.0008 | 0 | 0.0003 | 0.0008 | 0.003 | 0.0002 |
Cell Periphery | 0.0001 | 0 | 0 | 0 | 0 | 0 | 0.0003 | 0 | 0.0002 | 0.0001 | 0.001 | 0 | 0.0001 | 0 | 0 | 0.0002 | 0.0001 | 0 |
Cytoplasm | 0.9584 | 0.9661 | 0.9633 | 0.9653 | 0.9484 | 0.9516 | 0.8888 | 0.9842 | 0.9223 | 0.9122 | 0.8022 | 0.9295 | 0.8749 | 0.99 | 0.9729 | 0.8566 | 0.8401 | 0.9696 |
Cytoplasmic Foci | 0.0012 | 0.0006 | 0.0009 | 0.0014 | 0.0007 | 0.001 | 0.008 | 0.0005 | 0.0055 | 0.0038 | 0.0077 | 0.0088 | 0.0132 | 0.0002 | 0.0012 | 0.0133 | 0.038 | 0.001 |
Eisosomes | 0 | 0 | 0 | 0 | 0 | 0 | 0.0001 | 0 | 0.0002 | 0.0001 | 0.0004 | 0.0001 | 0.0002 | 0 | 0 | 0.0002 | 0.0001 | 0 |
Endoplasmic Reticulum | 0.0027 | 0.006 | 0.0008 | 0.0017 | 0.0017 | 0.0027 | 0.0053 | 0.0005 | 0.0014 | 0.0029 | 0.0166 | 0.0028 | 0.0064 | 0.0002 | 0.001 | 0.0051 | 0.007 | 0.0009 |
Endosome | 0.0012 | 0.0003 | 0.0012 | 0.0015 | 0.0016 | 0.0025 | 0.0135 | 0.0002 | 0.0044 | 0.0073 | 0.0286 | 0.0089 | 0.0091 | 0 | 0.003 | 0.0268 | 0.0258 | 0.0007 |
Golgi | 0.0001 | 0 | 0.0003 | 0.0001 | 0 | 0.0002 | 0.0026 | 0 | 0.0018 | 0.0016 | 0.0107 | 0.0027 | 0.0045 | 0 | 0.0014 | 0.0103 | 0.0041 | 0.0001 |
Lipid Particles | 0.0003 | 0 | 0.001 | 0 | 0 | 0.0003 | 0.0024 | 0.0001 | 0.0051 | 0.0037 | 0.0242 | 0.0038 | 0.0094 | 0 | 0.0019 | 0.0173 | 0.0088 | 0 |
Mitochondria | 0.0002 | 0 | 0.0002 | 0.0001 | 0.0001 | 0.0023 | 0.0049 | 0.0001 | 0.0049 | 0.0205 | 0.027 | 0.0018 | 0.0022 | 0 | 0.001 | 0.027 | 0.0012 | 0.0014 |
None | 0.0011 | 0.0005 | 0.0005 | 0.0004 | 0.0006 | 0.0006 | 0.0022 | 0.0003 | 0.001 | 0.002 | 0.0102 | 0.0007 | 0.0018 | 0.0002 | 0.0004 | 0.0018 | 0.0219 | 0.0004 |
Nuclear Periphery | 0.0063 | 0.0021 | 0.0034 | 0.0029 | 0.0065 | 0.0063 | 0.011 | 0.0016 | 0.0027 | 0.0118 | 0.0151 | 0.007 | 0.0118 | 0.0007 | 0.0032 | 0.0052 | 0.0056 | 0.0029 |
Nucleolus | 0.0002 | 0 | 0.0001 | 0 | 0.0001 | 0.0002 | 0.0004 | 0 | 0.0002 | 0.0004 | 0.0005 | 0.0001 | 0.0001 | 0 | 0.0002 | 0.0002 | 0.0004 | 0 |
Nucleus | 0.0238 | 0.023 | 0.0253 | 0.0248 | 0.0344 | 0.0265 | 0.0362 | 0.0114 | 0.0209 | 0.0234 | 0.0187 | 0.0248 | 0.0228 | 0.0084 | 0.0076 | 0.0153 | 0.0119 | 0.0186 |
Peroxisomes | 0 | 0 | 0.0003 | 0 | 0 | 0 | 0.0013 | 0 | 0.0024 | 0.0005 | 0.0016 | 0.0011 | 0.0085 | 0 | 0.0004 | 0.002 | 0.0096 | 0.0001 |
Punctate Nuclear | 0.0011 | 0.0002 | 0.0008 | 0.0004 | 0.0011 | 0.0025 | 0.0026 | 0.0002 | 0.0015 | 0.0008 | 0.0013 | 0.0013 | 0.0039 | 0.0001 | 0.0006 | 0.0016 | 0.0116 | 0.0002 |
Vacuole | 0.002 | 0.0003 | 0.0004 | 0.0006 | 0.0032 | 0.0014 | 0.0061 | 0.0003 | 0.0032 | 0.0022 | 0.0096 | 0.001 | 0.0012 | 0 | 0.0014 | 0.0022 | 0.0014 | 0.0007 |
Vacuole Periphery | 0.0003 | 0 | 0.0001 | 0.0001 | 0.0009 | 0.0006 | 0.0016 | 0 | 0.0009 | 0.0036 | 0.0032 | 0.0006 | 0.0013 | 0 | 0.0007 | 0.0016 | 0.0007 | 0.0003 |
R1 | R2 | |||||||||
---|---|---|---|---|---|---|---|---|---|---|
G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | |
Gene Expression | 19.554 | 37.4573 | 35.2069 | 37.3938 | 43.4616 | 26.0576 | 23.1446 | 22.4375 | 29.5029 | 33.9104 |
Translational Efficiency | 3.8152 | 1.9412 | 2.1672 | 2.1125 | 1.6321 | 2.0626 | 2.4061 | 2.0054 | 1.5608 | 2.0005 |
Dataset | Hit |
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Protein Concentration | ✔ |
Protein Localization | ✔ |
Gene Expression | ✘ |
Translational Efficiency | ✘ |
Temp | Actin Patch (Sac6-tdTomato) | Cortical Patch (Sla1-GFP) | Late Endosome (Snf7-GFP) | Vacuole (Vph1-GFP) |
---|---|---|---|---|
37℃ | ||||
RT |
Gene / Allele | Actin Patch (Sac6-tdTomato) | Cortical Patch (Sla1-GFP) | Late Endosome (Snf7-GFP) | Vacuole (Sac6-tdTomato) |
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Gene | Images |
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Gene | Images |
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