Standard name | |
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Human Ortholog | |
Description | Putative RNA binding protein; localizes to stress granules induced by glucose deprivation; interacts with Rbg1p in a two-hybrid assay; protein abundance increases in response to DNA replication stress |
ensLOC | DeepLoc | |||||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Localization | WT1 | WT2 | WT3 | RAP60 | RAP140 | RAP220 | RAP300 | RAP380 | RAP460 | RAP540 | RAP620 | RAP700 | HU80 | HU120 | HU160 | rpd3Δ_1 | rpd3Δ_2 | rpd3Δ_3 | WT1 | WT2 | WT3 | AF100 | AF140 | AF180 |
Cortical Patches | 0 | 0 | 0 | 0 | 0 | 0 | 3 | 3 | 1 | – | 1 | 2 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 1 | 0 | 0 | 1 | 0 |
Bud | 1 | 1 | 1 | 1 | 2 | 0 | 2 | 5 | 1 | – | 4 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 2 | 0 | 0 | 0 | 0 |
Bud Neck | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 1 | 0 | 0 | 0 | 0 |
Bud Site | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | – | – | – | – | – | – |
Cell Periphery | 4 | 8 | 3 | 0 | 6 | 2 | 4 | 1 | 8 | – | 6 | 2 | 0 | 7 | 7 | 29 | 22 | 27 | 0 | 0 | 0 | 0 | 0 | 0 |
Cytoplasm | 281 | 478 | 151 | 52 | 146 | 119 | 186 | 163 | 110 | – | 103 | 51 | 123 | 216 | 211 | 280 | 284 | 233 | 277 | 484 | 158 | 66 | 136 | 150 |
Endoplasmic Reticulum | 5 | 18 | 2 | 0 | 3 | 2 | 11 | 10 | 9 | – | 8 | 4 | 2 | 2 | 4 | 7 | 11 | 14 | 2 | 6 | 7 | 13 | 16 | 13 |
Endosome | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | – | 1 | 0 | 0 | 0 | 0 | 3 | 0 | 3 | 1 | 2 | 0 | 1 | 0 | 0 |
Golgi | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 1 | 0 | 3 | 4 | 3 | 2 | 2 | 0 | 0 | 0 | 1 |
Mitochondria | 0 | 3 | 0 | 4 | 3 | 19 | 36 | 38 | 77 | – | 121 | 64 | 0 | 1 | 7 | 5 | 3 | 7 | 0 | 1 | 3 | 2 | 4 | 1 |
Nucleus | 0 | 0 | 0 | 2 | 1 | 0 | 0 | 1 | 1 | – | 7 | 1 | 0 | 0 | 1 | 1 | 0 | 2 | 0 | 0 | 0 | 0 | 0 | 0 |
Nuclear Periphery | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 2 | – | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Nucleolus | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | – | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Peroxisomes | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
SpindlePole | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Vac/Vac Membrane | 1 | 0 | 0 | 0 | 1 | 0 | 3 | 18 | 6 | – | 9 | 14 | 0 | 0 | 0 | 32 | 30 | 37 | 0 | 6 | 2 | 1 | 5 | 8 |
Unique Cell Count | 284 | 495 | 153 | 56 | 154 | 130 | 220 | 212 | 178 | 198 | 117 | 125 | 223 | 217 | 316 | 318 | 278 | 290 | 510 | 178 | 87 | 169 | 179 | |
Labelled Cell Count | 292 | 509 | 157 | 60 | 162 | 143 | 245 | 240 | 215 | 260 | 140 | 125 | 228 | 230 | 360 | 355 | 327 | 290 | 510 | 178 | 87 | 169 | 179 |
Screen | WT1 | WT2 | WT3 | RAP60 | RAP140 | RAP220 | RAP300 | RAP380 | RAP460 | RAP540 | RAP620 | RAP700 | HU80 | HU120 | HU160 | rpd3Δ_1 | rpd3Δ_2 | rpd3Δ_3 | AF100 | AF140 | AF180 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Mean Cell GFP Intensity (1e-4) | 8.3 | 9.4 | 7.6 | 7.1 | 8.0 | 6.3 | 6.7 | 7.1 | 6.5 | – | 5.9 | 6.4 | 7.6 | 8.6 | 8.8 | 12.2 | 12.3 | 11.4 | 7.0 | 7.5 | 8.5 |
Std Deviation (1e-4) | 1.2 | 1.9 | 1.1 | 1.7 | 0.9 | 1.0 | 1.0 | 1.0 | 1.2 | – | 1.2 | 1.2 | 0.9 | 1.3 | 1.4 | 3.2 | 2.4 | 3.0 | 1.2 | 1.2 | 1.5 |
Intensity Change (Log2) | – | – | – | -0.09 | 0.08 | -0.27 | -0.19 | -0.09 | -0.23 | – | -0.37 | -0.24 | 0.01 | 0.17 | 0.21 | 0.68 | 0.69 | 0.59 | -0.13 | -0.01 | 0.17 |
Localization | RAP60 | RAP140 | RAP220 | RAP300 | RAP380 | RAP460 | RAP540 | RAP620 | RAP700 | HU80 | HU120 | HU160 | rpd3Δ_1 | rpd3Δ_2 | rpd3Δ_3 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Cortical Patches | 0 | 0 | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Bud | 0 | 0 | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Bud Neck | 0 | 0 | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Bud Site | 0 | 0 | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Cell Periphery | 0 | 0 | 0 | 0 | 0 | 1.3 | – | 0 | 0 | 0 | 0 | 0 | 2.9 | 2.2 | 3.0 |
Cytoplasm | -2.2 | -1.9 | -2.9 | -4.6 | -5.9 | -8.2 | – | -9.7 | -10.3 | -0.2 | -1.1 | -0.9 | -3.8 | -3.6 | -4.7 |
Endoplasmic Reticulum | 0 | 0 | 0 | 1.9 | 1.8 | 1.9 | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 2.0 |
Endosome | 0 | 0 | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Golgi | 0 | 0 | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Mitochondria | 0 | 0 | 4.9 | 5.3 | 5.5 | 9.3 | – | 11.9 | 10.5 | 0 | 0 | 0 | 0 | 0 | 0 |
Nucleus | 0 | 0 | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Nuclear Periphery | 0 | 0 | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Nucleolus | 0 | 0 | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Peroxisomes | 0 | 0 | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
SpindlePole | 0 | 0 | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Vacuole | 0 | 0 | 0 | 0 | 3.7 | 0 | – | 0 | 4.4 | 0 | 0 | 0 | 4.1 | 3.9 | 4.7 |
R1 | R2 | R3 | ||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
G1 Pre-START | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | G1 Pre-START | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | G1 Pre-START | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | |
Concentration | 2.1423 | 3.9005 | 3.5451 | 3.1091 | 3.1633 | 3.3299 | 3.9683 | 4.5907 | 4.2419 | 3.8185 | 3.2944 | 4.3607 | 3.3653 | 4.0601 | 3.687 | 4.0162 | 3.6771 | 4.1398 |
Actin | 0.0184 | 0.0008 | 0.0038 | 0.0002 | 0.0009 | 0.0008 | 0.0461 | 0.0007 | 0.0401 | 0.0223 | 0.0638 | 0.0007 | 0.0396 | 0.001 | 0.006 | 0.0135 | 0.0076 | 0.0079 |
Bud | 0.0005 | 0.0014 | 0.0006 | 0.0003 | 0.0006 | 0.0003 | 0.0011 | 0.0003 | 0.001 | 0.0021 | 0.0014 | 0.0002 | 0.0034 | 0.0006 | 0.0095 | 0.0009 | 0.006 | 0.0007 |
Bud Neck | 0.0006 | 0.0002 | 0.0005 | 0.0003 | 0.0006 | 0.0008 | 0.0017 | 0.0001 | 0.0028 | 0.0009 | 0.0105 | 0.0007 | 0.0018 | 0.0002 | 0.0017 | 0.0023 | 0.0007 | 0.0012 |
Bud Periphery | 0.0007 | 0.001 | 0.0005 | 0.0001 | 0.0002 | 0.0002 | 0.0014 | 0.0001 | 0.0009 | 0.0021 | 0.0013 | 0.0001 | 0.002 | 0.0003 | 0.0041 | 0.0011 | 0.0037 | 0.0005 |
Bud Site | 0.0026 | 0.0029 | 0.0008 | 0.0003 | 0.0003 | 0.0002 | 0.0045 | 0.0011 | 0.0141 | 0.0029 | 0.0422 | 0.0001 | 0.0064 | 0.007 | 0.0117 | 0.0013 | 0.0023 | 0.0005 |
Cell Periphery | 0.0006 | 0.0002 | 0.0002 | 0.0001 | 0.0001 | 0.0001 | 0.0007 | 0.0003 | 0.0006 | 0.0007 | 0.0005 | 0.0001 | 0.0006 | 0.0002 | 0.0007 | 0.0001 | 0.0004 | 0.0001 |
Cytoplasm | 0.7789 | 0.9195 | 0.8406 | 0.8555 | 0.8545 | 0.8608 | 0.5504 | 0.9496 | 0.8409 | 0.7868 | 0.6497 | 0.8955 | 0.693 | 0.9166 | 0.7903 | 0.7663 | 0.7408 | 0.8736 |
Cytoplasmic Foci | 0.0271 | 0.012 | 0.0217 | 0.0138 | 0.027 | 0.0187 | 0.0374 | 0.01 | 0.0195 | 0.0292 | 0.0536 | 0.0232 | 0.0436 | 0.0169 | 0.0373 | 0.046 | 0.0602 | 0.0298 |
Eisosomes | 0.0002 | 0 | 0 | 0 | 0 | 0 | 0.0007 | 0 | 0.0001 | 0.0002 | 0.0006 | 0 | 0.0007 | 0 | 0.0001 | 0.0001 | 0.0001 | 0 |
Endoplasmic Reticulum | 0.0312 | 0.013 | 0.023 | 0.011 | 0.0399 | 0.0251 | 0.0529 | 0.0085 | 0.0134 | 0.0149 | 0.0088 | 0.0251 | 0.0216 | 0.0076 | 0.0115 | 0.0096 | 0.0079 | 0.0114 |
Endosome | 0.0675 | 0.0287 | 0.0567 | 0.0862 | 0.0524 | 0.0618 | 0.082 | 0.0151 | 0.033 | 0.08 | 0.0461 | 0.0374 | 0.0615 | 0.0191 | 0.0604 | 0.1036 | 0.0862 | 0.0428 |
Golgi | 0.0066 | 0.0018 | 0.005 | 0.0019 | 0.0073 | 0.0077 | 0.0318 | 0.0022 | 0.0123 | 0.0176 | 0.0131 | 0.0044 | 0.0082 | 0.0017 | 0.01 | 0.0213 | 0.0127 | 0.0058 |
Lipid Particles | 0.0029 | 0.0002 | 0.0005 | 0.0001 | 0.0001 | 0.0003 | 0.0105 | 0.0002 | 0.0021 | 0.0012 | 0.0183 | 0.0003 | 0.0116 | 0.0002 | 0.0021 | 0.003 | 0.0035 | 0.0017 |
Mitochondria | 0.014 | 0.0012 | 0.0032 | 0.0018 | 0.0069 | 0.0082 | 0.0222 | 0.0004 | 0.0021 | 0.0088 | 0.0029 | 0.0026 | 0.0128 | 0.0018 | 0.0168 | 0.0046 | 0.0097 | 0.0039 |
None | 0.0249 | 0.0066 | 0.0284 | 0.0056 | 0.0014 | 0.0057 | 0.0516 | 0.0073 | 0.0068 | 0.0049 | 0.006 | 0.0049 | 0.0389 | 0.0203 | 0.0179 | 0.0075 | 0.0123 | 0.0082 |
Nuclear Periphery | 0.0042 | 0.0018 | 0.0037 | 0.002 | 0.0018 | 0.0013 | 0.0291 | 0.0008 | 0.0019 | 0.0032 | 0.0048 | 0.0007 | 0.0092 | 0.0008 | 0.0019 | 0.0023 | 0.0193 | 0.0012 |
Nucleolus | 0.0006 | 0 | 0.0003 | 0 | 0 | 0 | 0.003 | 0 | 0.0002 | 0.0001 | 0.0027 | 0 | 0.0005 | 0.0001 | 0.0003 | 0.0001 | 0.0004 | 0.0001 |
Nucleus | 0.0026 | 0.0012 | 0.0015 | 0.0019 | 0.0012 | 0.001 | 0.0198 | 0.0006 | 0.0015 | 0.002 | 0.0073 | 0.0007 | 0.0077 | 0.0012 | 0.0021 | 0.0014 | 0.0063 | 0.0011 |
Peroxisomes | 0.0019 | 0.0001 | 0.0002 | 0 | 0.0002 | 0.0001 | 0.0093 | 0 | 0.0014 | 0.0007 | 0.0452 | 0.0001 | 0.0196 | 0.0002 | 0.0055 | 0.003 | 0.0055 | 0.0044 |
Punctate Nuclear | 0.0013 | 0.0002 | 0.0005 | 0.0002 | 0.0001 | 0.0002 | 0.0318 | 0.0001 | 0.001 | 0.0006 | 0.0163 | 0.0002 | 0.0033 | 0.0005 | 0.0021 | 0.0008 | 0.0064 | 0.0011 |
Vacuole | 0.0101 | 0.0059 | 0.0064 | 0.0141 | 0.0032 | 0.0048 | 0.0082 | 0.002 | 0.0036 | 0.0162 | 0.0036 | 0.0021 | 0.011 | 0.003 | 0.0064 | 0.0085 | 0.0054 | 0.0029 |
Vacuole Periphery | 0.0025 | 0.0013 | 0.0019 | 0.0044 | 0.0014 | 0.002 | 0.0037 | 0.0003 | 0.0008 | 0.0026 | 0.0011 | 0.0008 | 0.0031 | 0.0005 | 0.0017 | 0.0028 | 0.0028 | 0.0011 |
R1 | R2 | |||||||||
---|---|---|---|---|---|---|---|---|---|---|
G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | |
Gene Expression | 10.1122 | 12.6135 | 13.1037 | 21.4235 | 13.7207 | 9.8716 | 17.1109 | 22.6671 | 19.9946 | 20.9795 |
Translational Efficiency | 1.559 | 1.5126 | 1.2401 | 0.788 | 1.1562 | 1.8595 | 1.1377 | 0.9089 | 1.097 | 1.094 |
Dataset | Hit |
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Protein Concentration | ✘ |
Protein Localization | ✘ |
Gene Expression | ✔ |
Translational Efficiency | ✘ |
Temp | Actin Patch (Sac6-tdTomato) | Cortical Patch (Sla1-GFP) | Late Endosome (Snf7-GFP) | Vacuole (Vph1-GFP) |
---|---|---|---|---|
37℃ | ||||
RT |
Gene / Allele | Actin Patch (Sac6-tdTomato) | Cortical Patch (Sla1-GFP) | Late Endosome (Snf7-GFP) | Vacuole (Sac6-tdTomato) |
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Gene | Images |
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Gene | Images |
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