Standard name | |
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Human Ortholog | |
Description | Subunit of the membrane-associated retromer complex; endosomal protein; essential for endosome-to-Golgi retrograde transport; forms a subcomplex with Vps35p and Vps26p that selects cargo proteins for endosome-to-Golgi retrieval |
ensLOC | DeepLoc | |||||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Localization | WT1 | WT2 | WT3 | RAP60 | RAP140 | RAP220 | RAP300 | RAP380 | RAP460 | RAP540 | RAP620 | RAP700 | HU80 | HU120 | HU160 | rpd3Δ_1 | rpd3Δ_2 | rpd3Δ_3 | WT1 | WT2 | WT3 | AF100 | AF140 | AF180 |
Cortical Patches | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 3 | 2 | 0 | 3 | 1 | 5 | 1 | 5 |
Bud | 0 | 1 | 0 | 0 | 7 | 6 | 3 | 3 | 4 | 1 | 2 | 1 | 0 | 0 | 0 | 2 | 3 | 2 | 1 | 2 | 0 | 5 | 4 | 12 |
Bud Neck | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 2 | 2 | 1 | 0 | 0 | 4 | 0 | 1 | 3 | 0 | 0 | 1 | 1 | 0 | 0 | 0 | 2 |
Bud Site | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | – | – | – | – | – | – |
Cell Periphery | 1 | 1 | 0 | 0 | 3 | 0 | 1 | 4 | 0 | 2 | 1 | 0 | 1 | 2 | 1 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 2 |
Cytoplasm | 93 | 248 | 75 | 209 | 333 | 268 | 280 | 363 | 140 | 181 | 76 | 86 | 183 | 325 | 362 | 51 | 49 | 40 | 87 | 199 | 79 | 116 | 218 | 278 |
Endoplasmic Reticulum | 0 | 1 | 1 | 0 | 2 | 1 | 1 | 0 | 2 | 0 | 2 | 0 | 3 | 3 | 0 | 5 | 8 | 4 | 0 | 1 | 0 | 0 | 4 | 1 |
Endosome | 1 | 0 | 1 | 0 | 5 | 1 | 1 | 6 | 1 | 6 | 3 | 1 | 0 | 0 | 3 | 50 | 52 | 63 | 2 | 4 | 4 | 1 | 3 | 1 |
Golgi | 1 | 0 | 0 | 0 | 1 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 2 | 0 | 1 | 2 | 2 | 1 | 2 | 3 | 0 |
Mitochondria | 6 | 12 | 5 | 15 | 35 | 66 | 87 | 69 | 74 | 80 | 61 | 65 | 0 | 0 | 0 | 17 | 9 | 12 | 6 | 26 | 6 | 8 | 13 | 14 |
Nucleus | 0 | 3 | 0 | 1 | 1 | 2 | 1 | 3 | 4 | 4 | 4 | 0 | 0 | 0 | 1 | 0 | 1 | 3 | 0 | 0 | 0 | 0 | 0 | 1 |
Nuclear Periphery | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 1 |
Nucleolus | 1 | 0 | 0 | 1 | 2 | 0 | 0 | 0 | 2 | 1 | 2 | 0 | 0 | 0 | 0 | 2 | 1 | 2 | 0 | 0 | 0 | 0 | 0 | 0 |
Peroxisomes | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 4 | 2 | 3 | 0 | 1 | 0 | 0 | 0 | 1 | 0 | 5 | 0 | 0 | 0 | 0 | 0 | 0 |
SpindlePole | 0 | 0 | 0 | 0 | 1 | 1 | 2 | 2 | 5 | 3 | 3 | 1 | 1 | 0 | 0 | 22 | 22 | 33 | 1 | 1 | 0 | 0 | 2 | 3 |
Vac/Vac Membrane | 0 | 0 | 0 | 1 | 5 | 3 | 2 | 8 | 0 | 8 | 3 | 3 | 0 | 2 | 2 | 25 | 36 | 41 | 0 | 8 | 0 | 3 | 6 | 12 |
Unique Cell Count | 100 | 259 | 77 | 216 | 364 | 301 | 343 | 432 | 193 | 249 | 124 | 134 | 187 | 328 | 368 | 131 | 135 | 142 | 105 | 256 | 97 | 146 | 266 | 346 |
Labelled Cell Count | 103 | 267 | 82 | 227 | 396 | 348 | 378 | 465 | 237 | 290 | 158 | 158 | 192 | 332 | 371 | 182 | 185 | 208 | 105 | 256 | 97 | 146 | 266 | 346 |
Screen | WT1 | WT2 | WT3 | RAP60 | RAP140 | RAP220 | RAP300 | RAP380 | RAP460 | RAP540 | RAP620 | RAP700 | HU80 | HU120 | HU160 | rpd3Δ_1 | rpd3Δ_2 | rpd3Δ_3 | AF100 | AF140 | AF180 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Mean Cell GFP Intensity (1e-4) | 3.4 | 3.9 | 3.7 | 3.8 | 4.2 | 3.8 | 3.5 | 4.6 | 4.1 | 4.2 | 4.6 | 4.3 | 4.9 | 4.8 | 5.1 | 5.9 | 5.9 | 6.2 | 5.6 | 5.6 | 5.7 |
Std Deviation (1e-4) | 0.6 | 0.8 | 1.6 | 2.2 | 2.5 | 2.2 | 2.1 | 3.1 | 2.2 | 2.5 | 2.8 | 2.8 | 1.1 | 1.4 | 1.4 | 1.2 | 1.2 | 1.4 | 1.6 | 2.1 | 2.5 |
Intensity Change (Log2) | – | – | – | 0.05 | 0.17 | 0.04 | -0.08 | 0.31 | 0.14 | 0.2 | 0.33 | 0.23 | 0.41 | 0.38 | 0.47 | 0.67 | 0.68 | 0.76 | 0.6 | 0.6 | 0.62 |
Localization | RAP60 | RAP140 | RAP220 | RAP300 | RAP380 | RAP460 | RAP540 | RAP620 | RAP700 | HU80 | HU120 | HU160 | rpd3Δ_1 | rpd3Δ_2 | rpd3Δ_3 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Actin | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – |
Bud | – | – | – | – | – | – | – | – | – | – | – | – | 0 | 0 | 0 |
Bud Neck | – | – | – | – | – | – | – | – | – | – | – | – | 0 | 0 | 0 |
Bud Site | – | – | – | – | – | – | – | – | – | – | – | – | 0 | 0 | 0 |
Cell Periphery | – | – | – | – | – | – | – | – | – | – | – | – | 0 | 0 | 0 |
Cyto | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – |
Endoplasmic Reticulum | – | – | – | – | – | – | – | – | – | – | – | – | 0 | 0 | 0 |
Endosome | – | – | – | – | – | – | – | – | – | – | – | – | 0 | 0 | 0 |
Golgi | – | – | – | – | – | – | – | – | – | – | – | – | 0 | 0 | 0 |
Mitochondria | – | – | – | – | – | – | – | – | – | – | – | – | 0 | 0 | 0 |
Nuclear Periphery | – | – | – | – | – | – | – | – | – | – | – | – | 0 | 0 | 0 |
Nuc | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – |
Nucleolus | – | – | – | – | – | – | – | – | – | – | – | – | 0 | 0 | 0 |
Peroxisomes | – | – | – | – | – | – | – | – | – | – | – | – | 0 | 0 | 0 |
SpindlePole | – | – | – | – | – | – | – | – | – | – | – | – | 0 | 0 | 0 |
Vac | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – |
Cortical Patches | – | – | – | – | – | – | – | – | – | – | – | – | 0 | 0 | 0 |
Cytoplasm | – | – | – | – | – | – | – | – | – | – | – | – | 0 | 0 | 0 |
Nucleus | – | – | – | – | – | – | – | – | – | – | – | – | 0 | 0 | 0 |
Vacuole | – | – | – | – | – | – | – | – | – | – | – | – | 4.1 | 5.0 | 5.2 |
R1 | R2 | R3 | ||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
G1 Pre-START | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | G1 Pre-START | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | G1 Pre-START | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | |
Concentration | 1.758 | 0.6348 | 0.7967 | 0.3506 | 0.082 | 0.3565 | 0.8924 | -0.2592 | 0.1846 | -0.1573 | -0.9689 | -0.0766 | -2.1809 | -1.8208 | -1.9976 | -1.9717 | -2.0199 | -2.0271 |
Actin | 0.0412 | 0.0034 | 0.0133 | 0.0197 | 0.009 | 0.0034 | 0.0897 | 0.0014 | 0.0234 | 0.0001 | 0 | 0.0008 | 0.0476 | 0.0002 | 0.0054 | 0.0002 | 0.0001 | 0.0004 |
Bud | 0.0069 | 0.0268 | 0.0099 | 0.0083 | 0.0188 | 0.0086 | 0.0009 | 0.0008 | 0.0129 | 0 | 0 | 0.0001 | 0.0002 | 0.0001 | 0.0006 | 0.0001 | 0.0001 | 0 |
Bud Neck | 0.0167 | 0.0037 | 0.0128 | 0.0014 | 0.0018 | 0.0155 | 0.0024 | 0.0003 | 0.0008 | 0.0001 | 0 | 0.0005 | 0.0007 | 0.0001 | 0.0005 | 0.0033 | 0.0001 | 0.0004 |
Bud Periphery | 0.0096 | 0.0089 | 0.0065 | 0.0106 | 0.0143 | 0.0072 | 0.0013 | 0.0009 | 0.0024 | 0.0001 | 0 | 0.0001 | 0.0002 | 0.0001 | 0.001 | 0 | 0.0001 | 0.0001 |
Bud Site | 0.0515 | 0.0296 | 0.0326 | 0.005 | 0.0253 | 0.0023 | 0.0057 | 0.0106 | 0.0109 | 0.0001 | 0 | 0.0009 | 0.0005 | 0.0003 | 0.0016 | 0.0001 | 0.0001 | 0.0001 |
Cell Periphery | 0.0017 | 0.0009 | 0.0008 | 0.0026 | 0.0025 | 0.0006 | 0.0013 | 0.0002 | 0.0003 | 0.0001 | 0.0001 | 0.0001 | 0.0001 | 0.0002 | 0.0002 | 0 | 0.0001 | 0.0001 |
Cytoplasm | 0.0479 | 0.0881 | 0.0722 | 0.093 | 0.0672 | 0.1121 | 0.0577 | 0.0239 | 0.0227 | 0.0495 | 0.0201 | 0.0804 | 0.0342 | 0.1503 | 0.1726 | 0.0891 | 0.1745 | 0.1926 |
Cytoplasmic Foci | 0.0549 | 0.0307 | 0.0416 | 0.0234 | 0.0553 | 0.0332 | 0.036 | 0.0051 | 0.0181 | 0.0067 | 0.0022 | 0.0185 | 0.0227 | 0.0072 | 0.0288 | 0.0372 | 0.0139 | 0.012 |
Eisosomes | 0.0011 | 0.0003 | 0.0004 | 0.0003 | 0.0003 | 0.0001 | 0.0011 | 0.0003 | 0.0007 | 0.0002 | 0.0002 | 0.0002 | 0.0005 | 0.0002 | 0.0002 | 0.0002 | 0 | 0.0001 |
Endoplasmic Reticulum | 0.0092 | 0.0014 | 0.001 | 0.0013 | 0.0025 | 0.0012 | 0.0304 | 0.0009 | 0.0006 | 0.0014 | 0.0006 | 0.0008 | 0.0012 | 0.0025 | 0.0031 | 0.0013 | 0.0016 | 0.0014 |
Endosome | 0.0432 | 0.0025 | 0.0124 | 0.0186 | 0.0155 | 0.0087 | 0.0513 | 0.0018 | 0.007 | 0.0048 | 0.0011 | 0.0069 | 0.0059 | 0.0038 | 0.0151 | 0.0107 | 0.0088 | 0.0101 |
Golgi | 0.0136 | 0.0003 | 0.0072 | 0.0142 | 0.0211 | 0.0024 | 0.0212 | 0.0001 | 0.0042 | 0.0001 | 0.0001 | 0.0029 | 0.0047 | 0.0002 | 0.0034 | 0.0003 | 0.0002 | 0.0009 |
Lipid Particles | 0.0302 | 0.0008 | 0.0098 | 0.0111 | 0.0078 | 0.0045 | 0.0278 | 0.0006 | 0.0021 | 0.0011 | 0.0008 | 0.0119 | 0.0348 | 0.0007 | 0.0022 | 0.0012 | 0.0005 | 0.0011 |
Mitochondria | 0.0483 | 0.0086 | 0.0145 | 0.0208 | 0.0255 | 0.0066 | 0.0058 | 0.0004 | 0.0019 | 0.0005 | 0.0002 | 0.0023 | 0.0016 | 0.0005 | 0.0035 | 0.0004 | 0.0003 | 0.0054 |
None | 0.5191 | 0.7408 | 0.7008 | 0.7305 | 0.6647 | 0.7359 | 0.5904 | 0.9493 | 0.8866 | 0.9292 | 0.9725 | 0.867 | 0.8216 | 0.828 | 0.732 | 0.8283 | 0.7893 | 0.7662 |
Nuclear Periphery | 0.0181 | 0.0017 | 0.0018 | 0.0026 | 0.0027 | 0.0021 | 0.0199 | 0.0004 | 0.0004 | 0.0009 | 0.0004 | 0.0007 | 0.0015 | 0.0009 | 0.0038 | 0.0015 | 0.0008 | 0.0007 |
Nucleolus | 0.0114 | 0.0059 | 0.0082 | 0.0024 | 0.0147 | 0.0034 | 0.0012 | 0.0004 | 0.0006 | 0.0002 | 0.0001 | 0.0002 | 0.0007 | 0.0002 | 0.0005 | 0.0006 | 0.0001 | 0.0003 |
Nucleus | 0.0118 | 0.0195 | 0.0094 | 0.0041 | 0.0104 | 0.0097 | 0.0054 | 0.0007 | 0.0016 | 0.0006 | 0.0002 | 0.0017 | 0.0006 | 0.001 | 0.0034 | 0.002 | 0.0009 | 0.0012 |
Peroxisomes | 0.0372 | 0.0048 | 0.0175 | 0.0061 | 0.0151 | 0.0039 | 0.0383 | 0.0002 | 0.0007 | 0.0001 | 0 | 0.002 | 0.0145 | 0.0002 | 0.0049 | 0.0005 | 0.0002 | 0.0011 |
Punctate Nuclear | 0.0114 | 0.0165 | 0.0209 | 0.0164 | 0.0151 | 0.0329 | 0.0077 | 0.0007 | 0.0012 | 0.0005 | 0.0001 | 0.0009 | 0.0053 | 0.0007 | 0.0054 | 0.0142 | 0.0009 | 0.0018 |
Vacuole | 0.0112 | 0.004 | 0.0054 | 0.0066 | 0.0065 | 0.0049 | 0.0031 | 0.0008 | 0.0008 | 0.0032 | 0.0012 | 0.001 | 0.0007 | 0.0023 | 0.0099 | 0.0074 | 0.0066 | 0.0037 |
Vacuole Periphery | 0.004 | 0.0007 | 0.0011 | 0.001 | 0.0041 | 0.0009 | 0.0015 | 0.0001 | 0.0001 | 0.0005 | 0.0001 | 0.0003 | 0.0003 | 0.0003 | 0.0021 | 0.0014 | 0.0007 | 0.0005 |
R1 | R2 | |||||||||
---|---|---|---|---|---|---|---|---|---|---|
G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | |
Gene Expression | 22.7439 | 24.398 | 29.3118 | 33.7443 | 26.1184 | 7.7936 | 29.0739 | 36.0745 | 39.3166 | 33.6497 |
Translational Efficiency | 2.0325 | 1.7286 | 1.3691 | 1.5162 | 1.4055 | 6.8224 | 1.7419 | 1.2192 | 1.3837 | 1.4236 |
Dataset | Hit |
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Protein Concentration | ✘ |
Protein Localization | ✘ |
Gene Expression | ✔ |
Translational Efficiency | ✘ |
Temp | Actin Patch (Sac6-tdTomato) | Cortical Patch (Sla1-GFP) | Late Endosome (Snf7-GFP) | Vacuole (Vph1-GFP) |
---|---|---|---|---|
37℃ | ||||
RT |
Gene / Allele | Actin Patch (Sac6-tdTomato) | Cortical Patch (Sla1-GFP) | Late Endosome (Snf7-GFP) | Vacuole (Sac6-tdTomato) |
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Gene | Images |
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Gene | Images |
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