Standard name
Human Ortholog
Description Component of cytosolic iron-sulfur protein assembly (CIA) machinery; acts at a late step of Fe-S cluster assembly; forms the CIA targeting complex with Cia1p and Met18p that directs Fe-S cluster incorporation and maturation of a subset of proteins involved in methionine biosynthesis, DNA replication and repair, transcription, and telomere maintenance; ortholog of human FAM96B
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Micrographs

ensLOC DeepLoc
Localization WT1 WT2 WT3 RAP60 RAP140 RAP220 RAP300 RAP380 RAP460 RAP540 RAP620 RAP700 HU80 HU120 HU160 rpd3Δ_1 rpd3Δ_2 rpd3Δ_3 WT1 WT2 WT3 AF100 AF140 AF180
Cortical Patches 0 0 0 0 0 0 0 – 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Bud 0 0 0 0 0 0 0 – 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Bud Neck 0 0 0 0 0 0 0 – 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Bud Site 0 0 0 0 0 0 0 – 0 0 0 0 0 0 0 0 0 0 – – – – – –
Cell Periphery 0 0 0 0 0 0 0 – 0 0 0.05 0 0 0 0 0 0.05 0.08 0 0 0 0 0 0
Cytoplasm 0.99 1.0 0.99 0.97 0.98 0.88 0.87 – 0.8 0.76 0.7 0.74 0.99 1.0 1.0 0.91 0.89 0.89 0.96 0.95 0.96 0.93 0.89 0.92
Endoplasmic Reticulum 0 0 0 0 0 0 0 – 0 0 0 0 0 0 0 0.05 0.05 0 0 0 0 0 0 0
Endosome 0 0 0 0 0 0 0 – 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Golgi 0 0 0 0 0 0 0 – 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Mitochondria 0 0 0 0 0 0.2 0.1 – 0.24 0.25 0.34 0.27 0 0 0 0.08 0 0 0 0 0 0 0 0
Nucleus 0 0 0 0 0 0 0 – 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Nuclear Periphery 0 0 0 0 0 0 0 – 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Nucleolus 0 0 0 0 0 0 0 – 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Peroxisomes 0 0 0 0 0 0 0 – 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
SpindlePole 0 0 0 0 0 0 0 – 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Vac/Vac Membrane 0 0 0 0 0 0 0.07 – 0 0.06 0 0 0 0 0 0.13 0.13 0.11 0 0 0 0 0 0
ensLOC DeepLoc
Localization WT1 WT2 WT3 RAP60 RAP140 RAP220 RAP300 RAP380 RAP460 RAP540 RAP620 RAP700 HU80 HU120 HU160 rpd3Δ_1 rpd3Δ_2 rpd3Δ_3 WT1 WT2 WT3 AF100 AF140 AF180
Cortical Patches 0 0 0 0 0 0 0 – 0 1 3 2 0 0 0 0 0 0 1 0 0 0 1 3
Bud 1 0 0 0 1 2 0 – 3 4 3 5 0 0 0 0 0 0 0 1 0 1 0 3
Bud Neck 0 0 0 0 0 0 1 – 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
Bud Site 0 0 0 0 0 0 0 – 1 0 0 0 0 0 0 0 0 0 – – – – – –
Cell Periphery 6 5 7 3 8 0 8 – 6 13 11 13 9 8 11 4 6 8 0 0 0 0 0 0
Cytoplasm 228 162 172 130 191 194 294 – 218 242 166 246 317 295 351 139 106 87 220 155 171 185 174 261
Endoplasmic Reticulum 1 0 0 0 1 2 1 – 2 2 3 6 1 1 1 8 6 3 1 0 0 3 5 4
Endosome 1 0 0 0 0 0 1 – 1 3 2 0 0 0 0 1 1 0 0 0 0 1 0 1
Golgi 1 0 0 0 0 0 0 – 0 0 0 0 0 0 0 0 0 2 1 0 1 1 1 0
Mitochondria 0 0 0 2 0 45 33 – 64 81 80 91 0 0 0 12 3 2 0 1 0 0 2 1
Nucleus 0 0 0 0 2 5 4 – 6 2 5 4 3 0 1 6 3 3 1 1 0 0 1 0
Nuclear Periphery 0 0 0 0 0 0 0 – 0 1 1 1 0 0 0 0 0 0 0 0 0 1 0 0
Nucleolus 0 0 0 0 0 0 0 – 0 0 1 0 0 0 0 0 2 0 0 0 0 0 0 0
Peroxisomes 0 0 0 0 0 0 0 – 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
SpindlePole 0 0 0 0 0 0 2 – 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Vac/Vac Membrane 0 0 2 2 2 7 23 – 12 18 7 9 0 1 0 20 15 11 0 0 2 3 4 1
Unique Cell Count 230 162 173 134 194 221 337 272 320 238 333 320 296 352 153 119 98 231 165 178 200 196 283
Labelled Cell Count 238 167 181 137 205 255 367 314 368 282 378 330 305 364 190 142 117 231 165 178 200 196 283


Cytoplasm

(Huh et al. Nature 2003 425:686)
Screen WT1 WT2 WT3 RAP60 RAP140 RAP220 RAP300 RAP380 RAP460 RAP540 RAP620 RAP700 HU80 HU120 HU160 rpd3Δ_1 rpd3Δ_2 rpd3Δ_3 AF100 AF140 AF180
Mean Cell GFP Intensity (1e-4) 9.2 9.3 8.5 8.3 8.4 5.6 6.9 – 6.1 6.2 6.1 6.1 9.2 9.3 9.5 9.9 9.8 10.5 8.3 8.7 8.3
Std Deviation (1e-4) 1.0 1.3 1.0 1.4 1.2 1.7 1.9 – 1.9 1.3 1.7 1.3 1.3 1.3 1.4 2.0 1.8 2.2 1.4 1.8 1.7
Intensity Change (Log2) – – – -0.02 -0.01 -0.59 -0.29 – -0.47 -0.45 -0.47 -0.46 0.12 0.14 0.17 0.23 0.21 0.31 -0.02 0.04 -0.02


Localization RAP60 RAP140 RAP220 RAP300 RAP380 RAP460 RAP540 RAP620 RAP700 HU80 HU120 HU160 rpd3Δ_1 rpd3Δ_2 rpd3Δ_3
Cortical Patches 0 0 0 0 – 0 0 0 0 0 0 0 0 0 0
Bud 0 0 0 0 – 0 0 0 0 0 0 0 0 0 0
Bud Neck 0 0 0 0 – 0 0 0 0 0 0 0 0 0 0
Bud Site 0 0 0 0 – 0 0 0 0 0 0 0 0 0 0
Cell Periphery 0 0 0 -1.1 – -1.1 0 0.3 -0.1 -0.7 -0.8 -0.5 -0.7 0.4 1.4
Cytoplasm -1.7 -0.9 -4.5 -4.6 – -6.0 -6.9 -7.8 -7.2 -0.4 0.4 0.5 -3.7 -4.1 -4.1
Endoplasmic Reticulum 0 0 0 0 – 0 0 0 0 0 0 0 0 0 0
Endosome 0 0 0 0 – 0 0 0 0 0 0 0 0 0 0
Golgi 0 0 0 0 – 0 0 0 0 0 0 0 0 0 0
Mitochondria 0 0 6.3 4.3 – 6.9 7.2 8.5 7.6 0 0 0 3.8 0 0
Nucleus 0 0 0 0 – 0 0 0 0 0 0 0 0 0 0
Nuclear Periphery 0 0 0 0 – 0 0 0 0 0 0 0 0 0 0
Nucleolus 0 0 0 0 – 0 0 0 0 0 0 0 0 0 0
Peroxisomes 0 0 0 0 – 0 0 0 0 0 0 0 0 0 0
SpindlePole 0 0 0 0 – 0 0 0 0 0 0 0 0 0 0
Vacuole 0 0 0 2.8 – 1.9 2.4 0 0 0 0 0 4.3 4.1 0

Images

Circle plot not available

Protein Concentration and Protein Localization Data

R1 R2 R3
G1 Pre-START G1 Post-START S/G2 Metaphase Anaphase Telophase G1 Pre-START G1 Post-START S/G2 Metaphase Anaphase Telophase G1 Pre-START G1 Post-START S/G2 Metaphase Anaphase Telophase
Concentration 2.605 4.1803 3.4702 2.9009 2.9571 3.384 5.4151 6.6103 6.3232 5.6887 6.2302 6.0703 6.9002 8.7426 8.0209 7.5081 7.7701 7.973
Actin 0.0096 0.0016 0.0106 0.0245 0.0112 0.0101 0.0137 0.0022 0.0033 0.018 0.0008 0.0006 0.01 0.0005 0.0032 0.0001 0.0194 0.0005
Bud 0.0004 0.0004 0.0004 0.0006 0.0003 0.002 0.0016 0.0036 0.0027 0.0055 0.0009 0.0007 0.0008 0.0016 0.0006 0.0001 0.0004 0
Bud Neck 0.001 0.0001 0.0004 0.0008 0.0005 0.0011 0.0015 0.0002 0.0003 0.001 0.0003 0.0009 0.0009 0.0001 0.0005 0.0002 0.0004 0.0005
Bud Periphery 0.0004 0.0001 0.0002 0.0005 0.0002 0.0006 0.0039 0.0012 0.001 0.0038 0.0006 0.0002 0.0011 0.0007 0.0003 0 0.0006 0
Bud Site 0.0065 0.0016 0.0007 0.0015 0.0004 0.0002 0.0023 0.0051 0.0029 0.019 0 0.0001 0.0017 0.0042 0.0016 0 0.0007 0
Cell Periphery 0.0004 0.0001 0.0001 0.0001 0.0002 0 0.0015 0.0001 0.0001 0.0002 0 0 0.0002 0.0002 0.0002 0 0.0001 0.0001
Cytoplasm 0.8363 0.9393 0.9198 0.8526 0.8362 0.9277 0.777 0.9464 0.9331 0.8467 0.9791 0.9485 0.9034 0.9643 0.923 0.985 0.8556 0.9763
Cytoplasmic Foci 0.0229 0.0123 0.0118 0.0403 0.0134 0.0084 0.0219 0.0055 0.0124 0.0212 0.0039 0.0092 0.016 0.0018 0.0127 0.0018 0.01 0.0032
Eisosomes 0.0006 0 0.0001 0.0001 0.0004 0 0.0002 0 0 0 0 0 0.0001 0 0 0 0.0002 0
Endoplasmic Reticulum 0.0084 0.0015 0.0042 0.0032 0.0145 0.0029 0.0116 0.0024 0.0013 0.002 0.0006 0.0015 0.0085 0.0053 0.003 0.0015 0.0045 0.0038
Endosome 0.0275 0.0083 0.0141 0.0361 0.0393 0.0074 0.0462 0.0014 0.0135 0.0315 0.0016 0.0089 0.0128 0.0009 0.0119 0.0013 0.0234 0.0012
Golgi 0.0057 0.0011 0.0021 0.0098 0.0071 0.0013 0.0222 0.0003 0.0068 0.0041 0.0001 0.0019 0.0041 0.0001 0.0029 0.0001 0.0154 0.0002
Lipid Particles 0.0074 0 0.0009 0.0011 0.0037 0.0008 0.0049 0.0001 0.0003 0.0003 0 0.0001 0.0012 0 0.0012 0 0.0131 0.0001
Mitochondria 0.0047 0.0003 0.0059 0.0026 0.0031 0.0004 0.0199 0.0002 0.0021 0.0024 0.0002 0.0017 0.002 0.0001 0.0014 0 0.0105 0.0001
None 0.0417 0.0301 0.0207 0.0167 0.031 0.0318 0.0087 0.026 0.015 0.0323 0.0097 0.012 0.0202 0.0177 0.0172 0.0082 0.0262 0.0127
Nuclear Periphery 0.0078 0.0004 0.0014 0.0008 0.0287 0.0008 0.0231 0.0005 0.0005 0.0008 0.0003 0.0042 0.0079 0.0004 0.0013 0.0003 0.0061 0.0002
Nucleolus 0.0006 0 0.0002 0 0.0002 0 0.0005 0.0002 0.0001 0.0001 0 0.0001 0.0002 0 0.0052 0 0.0001 0
Nucleus 0.0044 0.0008 0.0014 0.0009 0.0026 0.0016 0.0115 0.0024 0.0012 0.0025 0.0011 0.0025 0.0021 0.0009 0.0035 0.0007 0.0009 0.0005
Peroxisomes 0.0071 0.0005 0.001 0.0045 0.0007 0.0005 0.0072 0.0006 0.0014 0.0013 0.0001 0.0003 0.0022 0 0.0069 0 0.0068 0.0001
Punctate Nuclear 0.0024 0.0002 0.0009 0.0005 0.0021 0.0011 0.0012 0.0009 0.0007 0.0009 0.0002 0.0041 0.002 0.0001 0.0015 0.0001 0.0018 0.0002
Vacuole 0.003 0.0011 0.0026 0.002 0.0018 0.0009 0.0137 0.0006 0.0011 0.0054 0.0004 0.001 0.0015 0.0009 0.0015 0.0005 0.0026 0.0002
Vacuole Periphery 0.0011 0.0002 0.0004 0.0007 0.0024 0.0002 0.0056 0.0001 0.0004 0.0008 0.0001 0.0016 0.0008 0.0001 0.0004 0.0001 0.0013 0

Sequencing Data

R1 R2
G1 Post-START S/G2 Metaphase Anaphase Telophase G1 Post-START S/G2 Metaphase Anaphase Telophase
Gene Expression 58.658 46.7678 49.4266 34.0407 28.7767 50.7032 45.4957 40.6197 51.241 42.3954
Translational Efficiency 1.1129 1.4712 1.2552 2.0769 2.0991 1.3871 1.4681 1.5575 1.2321 1.3529

Hit Data

Dataset Hit
Protein Concentration ✘
Protein Localization ✘
Gene Expression ✘
Translational Efficiency ✘
Standard name
Human Ortholog
Description Component of cytosolic iron-sulfur protein assembly (CIA) machinery; acts at a late step of Fe-S cluster assembly; forms the CIA targeting complex with Cia1p and Met18p that directs Fe-S cluster incorporation and maturation of a subset of proteins involved in methionine biosynthesis, DNA replication and repair, transcription, and telomere maintenance; ortholog of human FAM96B
Localization
Cell Percentages cytoplasm (99%)
Cell Cycle Regulation No
Subcompartmental Group cytoplasm-4

Cia2

Cia2


Nearest neighbours ( genes)

correlation threshold

0.6

1.0

0.80


Biological Process (Gene Ontology)
Molecular Function (Gene Ontology)
Cellular Component (Gene Ontology)

Endocytosis
Temp Actin Patch (Sac6-tdTomato) Cortical Patch (Sla1-GFP) Late Endosome (Snf7-GFP) Vacuole (Vph1-GFP)
37℃
RT
Cell Cycle Omics

CYCLoPs (Cia2-GFP)
Gene / Allele Actin Patch (Sac6-tdTomato) Cortical Patch (Sla1-GFP) Late Endosome (Snf7-GFP) Vacuole (Sac6-tdTomato)
Gene Images
Gene Images
Images are not yet available
Images are not yet available