Standard name | |
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Human Ortholog | |
Description | 3-phosphoglycerate dehydrogenase and alpha-ketoglutarate reductase; 3PG dehydrogenase that catalyzes the first step in serine and glycine biosynthesis; also functions as an alpha-ketoglutarate reductase, converting alpha-ketoglutarate to D-2-hydroxyglutarate (D-2HG); localizes to the cytoplasm; SER33 has a paralog, SER3, that arose from the whole genome duplication |
ensLOC | DeepLoc | |||||||||||||||||||||||
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Localization | WT1 | WT2 | WT3 | RAP60 | RAP140 | RAP220 | RAP300 | RAP380 | RAP460 | RAP540 | RAP620 | RAP700 | HU80 | HU120 | HU160 | rpd3Δ_1 | rpd3Δ_2 | rpd3Δ_3 | WT1 | WT2 | WT3 | AF100 | AF140 | AF180 |
Cortical Patches | 0 | 0 | 0 | 0 | 0 | 0 | 2 | 0 | 7 | 7 | 5 | 9 | 0 | 0 | 1 | – | – | – | 0 | 0 | 0 | 0 | 0 | 0 |
Bud | 0 | 0 | 0 | 0 | 0 | 0 | 4 | 1 | 1 | 4 | 0 | 1 | 0 | 0 | 0 | – | – | – | 0 | 0 | 0 | 0 | 0 | 2 |
Bud Neck | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | – | – | – | 0 | 0 | 0 | 0 | 0 | 0 |
Bud Site | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | – | – | – | – | – | – | – | – | – |
Cell Periphery | 5 | 1 | 1 | 0 | 1 | 3 | 4 | 6 | 25 | 14 | 13 | 22 | 6 | 5 | 1 | – | – | – | 0 | 0 | 0 | 0 | 0 | 0 |
Cytoplasm | 279 | 104 | 97 | 52 | 97 | 126 | 115 | 172 | 121 | 131 | 68 | 102 | 383 | 448 | 445 | – | – | – | 272 | 116 | 86 | 263 | 247 | 257 |
Endoplasmic Reticulum | 3 | 2 | 1 | 1 | 3 | 1 | 6 | 25 | 9 | 10 | 4 | 11 | 14 | 12 | 12 | – | – | – | 3 | 1 | 4 | 8 | 9 | 19 |
Endosome | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | – | – | – | 1 | 0 | 2 | 0 | 2 | 1 |
Golgi | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | – | – | – | 0 | 0 | 0 | 0 | 0 | 0 |
Mitochondria | 2 | 0 | 0 | 1 | 1 | 7 | 17 | 12 | 31 | 50 | 23 | 37 | 0 | 0 | 0 | – | – | – | 1 | 0 | 1 | 0 | 2 | 1 |
Nucleus | 0 | 1 | 0 | 1 | 5 | 0 | 1 | 3 | 0 | 1 | 0 | 1 | 0 | 1 | 0 | – | – | – | 0 | 0 | 0 | 0 | 0 | 0 |
Nuclear Periphery | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | – | – | – | 0 | 0 | 0 | 0 | 1 | 0 |
Nucleolus | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | – | – | – | 0 | 0 | 0 | 0 | 0 | 0 |
Peroxisomes | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | – | – | – | 0 | 0 | 0 | 0 | 0 | 0 |
SpindlePole | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | – | – | – | 0 | 0 | 0 | 0 | 0 | 0 |
Vac/Vac Membrane | 1 | 0 | 0 | 1 | 0 | 1 | 0 | 2 | 2 | 0 | 0 | 1 | 0 | 0 | 0 | – | – | – | 3 | 1 | 0 | 1 | 2 | 4 |
Unique Cell Count | 285 | 106 | 100 | 53 | 102 | 133 | 133 | 209 | 158 | 180 | 92 | 149 | 391 | 460 | 457 | 286 | 121 | 99 | 278 | 272 | 294 | |||
Labelled Cell Count | 290 | 108 | 101 | 56 | 107 | 138 | 150 | 222 | 196 | 217 | 113 | 185 | 403 | 466 | 459 | 286 | 121 | 99 | 278 | 272 | 294 |
Screen | WT1 | WT2 | WT3 | RAP60 | RAP140 | RAP220 | RAP300 | RAP380 | RAP460 | RAP540 | RAP620 | RAP700 | HU80 | HU120 | HU160 | rpd3Δ_1 | rpd3Δ_2 | rpd3Δ_3 | AF100 | AF140 | AF180 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Mean Cell GFP Intensity (1e-4) | 25.8 | 28.1 | 16.2 | 14.3 | 13.9 | 11.8 | 9.4 | 9.8 | 10.3 | 9.8 | 9.0 | 9.2 | 32.9 | 32.0 | 30.0 | – | – | – | 20.2 | 20.6 | 21.2 |
Std Deviation (1e-4) | 5.4 | 7.1 | 4.4 | 5.1 | 4.0 | 3.4 | 2.9 | 2.8 | 2.4 | 2.6 | 2.3 | 2.2 | 8.2 | 7.9 | 7.7 | – | – | – | 4.4 | 6.0 | 6.0 |
Intensity Change (Log2) | – | – | – | -0.18 | -0.22 | -0.45 | -0.79 | -0.72 | -0.66 | -0.72 | -0.85 | -0.82 | 1.02 | 0.98 | 0.89 | – | – | – | 0.32 | 0.35 | 0.39 |
Localization | RAP60 | RAP140 | RAP220 | RAP300 | RAP380 | RAP460 | RAP540 | RAP620 | RAP700 | HU80 | HU120 | HU160 | rpd3Δ_1 | rpd3Δ_2 | rpd3Δ_3 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Cortical Patches | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | – | – | – |
Bud | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | – | – | – |
Bud Neck | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | – | – | – |
Bud Site | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | – | – | – |
Cell Periphery | 0 | 0 | 0 | 0 | 0 | 3.9 | 2.4 | 3.5 | 3.7 | 0 | 0 | 0 | – | – | – |
Cytoplasm | 0.4 | -0.7 | -0.8 | -2.8 | -3.6 | -4.4 | -5.0 | -4.6 | -5.5 | 0.6 | 0.2 | 0.2 | – | – | – |
Endoplasmic Reticulum | 0 | 0 | 0 | 0 | 3.2 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | – | – | – |
Endosome | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | – | – | – |
Golgi | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | – | – | – |
Mitochondria | 0 | 0 | 0 | 3.7 | 0 | 4.7 | 5.8 | 5.3 | 5.4 | 0 | 0 | 0 | – | – | – |
Nucleus | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | – | – | – |
Nuclear Periphery | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | – | – | – |
Nucleolus | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | – | – | – |
Peroxisomes | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | – | – | – |
SpindlePole | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | – | – | – |
Vacuole | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | – | – | – |
R1 | R2 | R3 | ||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
G1 Pre-START | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | G1 Pre-START | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | G1 Pre-START | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | |
Concentration | 24.8869 | 38.1251 | 35.5341 | 30.9748 | 31.259 | 36.1669 | 24.0235 | 35.9346 | 31.2833 | 27.0916 | 25.3475 | 30.3691 | 35.1417 | 42.2538 | 38.6805 | 46.7621 | 38.8324 | 40.4131 |
Actin | 0.0321 | 0.0034 | 0.0005 | 0.0008 | 0.0031 | 0.0005 | 0.0399 | 0.0004 | 0.0142 | 0.0002 | 0.0019 | 0.0043 | 0.0025 | 0.003 | 0.0171 | 0.0002 | 0.0002 | 0.0013 |
Bud | 0.0022 | 0.0003 | 0.0007 | 0.0008 | 0.0009 | 0.0004 | 0.0014 | 0.0003 | 0.0027 | 0.0007 | 0.0005 | 0.0038 | 0.0007 | 0.0011 | 0.0007 | 0.0017 | 0.0005 | 0.0007 |
Bud Neck | 0.0016 | 0.0005 | 0.0005 | 0.0007 | 0.0006 | 0.0016 | 0.0009 | 0.0002 | 0.0006 | 0.0005 | 0.0006 | 0.0027 | 0.0004 | 0.0003 | 0.001 | 0.0004 | 0.0003 | 0.0014 |
Bud Periphery | 0.0024 | 0.0001 | 0.0003 | 0.0005 | 0.0009 | 0.0002 | 0.002 | 0 | 0.0037 | 0.0002 | 0.0003 | 0.0065 | 0.0004 | 0.0007 | 0.0005 | 0.0004 | 0.0001 | 0.0002 |
Bud Site | 0.0079 | 0.0006 | 0.0005 | 0.0003 | 0.0011 | 0.0001 | 0.005 | 0.0002 | 0.0051 | 0.0001 | 0.0003 | 0.0021 | 0.0008 | 0.005 | 0.0088 | 0.0002 | 0.0003 | 0.0001 |
Cell Periphery | 0.0041 | 0.0011 | 0.0008 | 0.0002 | 0.0003 | 0.0002 | 0.0019 | 0.0001 | 0.0008 | 0.0002 | 0.0001 | 0.0011 | 0.0014 | 0.0015 | 0.0005 | 0.0002 | 0.0001 | 0.0002 |
Cytoplasm | 0.5872 | 0.9646 | 0.9105 | 0.8758 | 0.8363 | 0.9156 | 0.7119 | 0.9768 | 0.8964 | 0.8395 | 0.7777 | 0.8561 | 0.7644 | 0.9506 | 0.8821 | 0.8852 | 0.8762 | 0.9229 |
Cytoplasmic Foci | 0.0318 | 0.0023 | 0.0031 | 0.0243 | 0.0173 | 0.0045 | 0.0088 | 0.0022 | 0.0078 | 0.0054 | 0.0142 | 0.0121 | 0.014 | 0.0022 | 0.0183 | 0.0023 | 0.0041 | 0.0085 |
Eisosomes | 0.0004 | 0 | 0 | 0 | 0.0001 | 0 | 0.0007 | 0 | 0 | 0 | 0 | 0 | 0.0001 | 0.0001 | 0.0006 | 0 | 0 | 0 |
Endoplasmic Reticulum | 0.0936 | 0.0084 | 0.0198 | 0.0065 | 0.0197 | 0.0429 | 0.0712 | 0.0096 | 0.0098 | 0.0154 | 0.0701 | 0.026 | 0.0548 | 0.0032 | 0.0086 | 0.0019 | 0.0053 | 0.0362 |
Endosome | 0.0356 | 0.0028 | 0.0092 | 0.0164 | 0.0253 | 0.0137 | 0.0277 | 0.004 | 0.0182 | 0.0215 | 0.0549 | 0.0285 | 0.0232 | 0.0054 | 0.0154 | 0.009 | 0.075 | 0.0128 |
Golgi | 0.0108 | 0.0018 | 0.0007 | 0.002 | 0.0081 | 0.0017 | 0.0094 | 0.0005 | 0.0048 | 0.0005 | 0.0094 | 0.0088 | 0.0034 | 0.0007 | 0.005 | 0.0002 | 0.0024 | 0.0015 |
Lipid Particles | 0.0092 | 0.0002 | 0.0002 | 0.0021 | 0.0115 | 0.0001 | 0.0022 | 0 | 0.0078 | 0.0001 | 0.0004 | 0.0032 | 0.0045 | 0.0005 | 0.0053 | 0 | 0.0008 | 0.0001 |
Mitochondria | 0.0101 | 0.0003 | 0.0118 | 0.0101 | 0.0443 | 0.0034 | 0.0202 | 0.0002 | 0.0015 | 0.0003 | 0.0557 | 0.0117 | 0.0095 | 0.0019 | 0.0019 | 0.0002 | 0.0012 | 0.0007 |
None | 0.0164 | 0.0002 | 0.0007 | 0.0059 | 0.0005 | 0.0003 | 0.0056 | 0.0002 | 0.0003 | 0.0002 | 0.0005 | 0.0017 | 0.048 | 0.0007 | 0.0009 | 0.0002 | 0.0004 | 0.0004 |
Nuclear Periphery | 0.0403 | 0.0011 | 0.0029 | 0.0063 | 0.005 | 0.0021 | 0.0291 | 0.0006 | 0.0023 | 0.0044 | 0.0044 | 0.0044 | 0.0317 | 0.0022 | 0.0019 | 0.0022 | 0.0069 | 0.0015 |
Nucleolus | 0.004 | 0 | 0.0003 | 0.0002 | 0.0004 | 0 | 0.001 | 0 | 0.0006 | 0 | 0 | 0.0003 | 0.0011 | 0.0025 | 0.0009 | 0 | 0.0001 | 0.0001 |
Nucleus | 0.0188 | 0.001 | 0.0017 | 0.0031 | 0.0017 | 0.0012 | 0.0206 | 0.0005 | 0.0011 | 0.0021 | 0.0013 | 0.0018 | 0.0161 | 0.0042 | 0.0013 | 0.0016 | 0.0028 | 0.0014 |
Peroxisomes | 0.0071 | 0.0001 | 0.0001 | 0.0017 | 0.0065 | 0 | 0.0006 | 0 | 0.0006 | 0 | 0.0002 | 0.0005 | 0.0005 | 0.0001 | 0.0031 | 0 | 0.0001 | 0.0001 |
Punctate Nuclear | 0.0131 | 0 | 0.0001 | 0.0003 | 0.0002 | 0 | 0.0023 | 0 | 0.0013 | 0 | 0.0002 | 0.0004 | 0.0016 | 0.0002 | 0.0007 | 0 | 0.0003 | 0.0001 |
Vacuole | 0.0568 | 0.0102 | 0.0298 | 0.0337 | 0.012 | 0.0087 | 0.0271 | 0.0035 | 0.0177 | 0.0935 | 0.0055 | 0.018 | 0.0134 | 0.0118 | 0.0224 | 0.0753 | 0.0169 | 0.0077 |
Vacuole Periphery | 0.0143 | 0.0009 | 0.0058 | 0.0082 | 0.0041 | 0.0026 | 0.0103 | 0.0006 | 0.0028 | 0.0152 | 0.002 | 0.0059 | 0.0074 | 0.0021 | 0.0031 | 0.0189 | 0.0059 | 0.0021 |
R1 | R2 | |||||||||
---|---|---|---|---|---|---|---|---|---|---|
G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | |
Gene Expression | 64.1696 | 41.2739 | 52.9484 | 81.0274 | 50.2236 | 51.6201 | 54.9943 | 74.4736 | 70.8963 | 68.6892 |
Translational Efficiency | 1.445 | 1.5093 | 1.6252 | 1.0288 | 1.3102 | 1.999 | 1.4673 | 1.0411 | 1.4069 | 1.3607 |
Dataset | Hit |
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Protein Concentration | ✘ |
Protein Localization | ✘ |
Gene Expression | ✘ |
Translational Efficiency | ✘ |
Temp | Actin Patch (Sac6-tdTomato) | Cortical Patch (Sla1-GFP) | Late Endosome (Snf7-GFP) | Vacuole (Vph1-GFP) |
---|---|---|---|---|
37℃ | ||||
RT |
Gene / Allele | Actin Patch (Sac6-tdTomato) | Cortical Patch (Sla1-GFP) | Late Endosome (Snf7-GFP) | Vacuole (Sac6-tdTomato) |
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Gene | Images |
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Gene | Images |
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