Standard name | |
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Human Ortholog | |
Description | Component of the Sec23p-Sec24p heterodimer of the COPII vesicle coat; required for cargo selection during vesicle formation in ER to Golgi transport; homologous to Sfb3p; SEC24 has a paralog, SFB2, that arose from the whole genome duplication |
ensLOC | DeepLoc | |||||||||||||||||||||||
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Localization | WT1 | WT2 | WT3 | RAP60 | RAP140 | RAP220 | RAP300 | RAP380 | RAP460 | RAP540 | RAP620 | RAP700 | HU80 | HU120 | HU160 | rpd3Δ_1 | rpd3Δ_2 | rpd3Δ_3 | WT1 | WT2 | WT3 | AF100 | AF140 | AF180 |
Cortical Patches | 115 | 45 | 282 | 205 | 278 | 285 | 365 | 199 | – | 373 | 179 | 368 | 108 | 186 | 114 | 125 | 213 | 108 | 116 | 39 | 372 | 163 | 355 | 369 |
Bud | 7 | 16 | 14 | 6 | 22 | 19 | 31 | 31 | – | 48 | 21 | 54 | 9 | 10 | 7 | 14 | 18 | 16 | 0 | 0 | 0 | 0 | 1 | 3 |
Bud Neck | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Bud Site | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | – | – | – | – | – | – |
Cell Periphery | 8 | 6 | 54 | 59 | 43 | 47 | 50 | 24 | – | 45 | 12 | 46 | 30 | 52 | 40 | 12 | 9 | 15 | 1 | 1 | 11 | 6 | 30 | 30 |
Cytoplasm | 8 | 24 | 22 | 24 | 20 | 23 | 23 | 15 | – | 13 | 10 | 11 | 33 | 34 | 35 | 28 | 70 | 59 | 1 | 3 | 1 | 2 | 4 | 5 |
Endoplasmic Reticulum | 211 | 78 | 375 | 274 | 379 | 414 | 640 | 489 | – | 502 | 173 | 307 | 277 | 394 | 261 | 3 | 22 | 11 | 115 | 72 | 92 | 73 | 175 | 211 |
Endosome | 0 | 0 | 1 | 0 | 2 | 0 | 3 | 1 | – | 4 | 0 | 4 | 0 | 0 | 1 | 1 | 6 | 3 | 0 | 1 | 1 | 0 | 1 | 2 |
Golgi | 167 | 13 | 340 | 252 | 432 | 304 | 617 | 546 | – | 598 | 205 | 404 | 92 | 150 | 126 | 125 | 280 | 183 | 37 | 21 | 68 | 49 | 88 | 144 |
Mitochondria | 11 | 6 | 30 | 48 | 97 | 226 | 232 | 241 | – | 468 | 243 | 451 | 0 | 0 | 0 | 20 | 63 | 32 | 0 | 1 | 3 | 4 | 10 | 3 |
Nucleus | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 1 | – | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 4 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Nuclear Periphery | 1 | 0 | 0 | 0 | 1 | 2 | 5 | 18 | – | 18 | 7 | 10 | 1 | 0 | 0 | 0 | 2 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Nucleolus | 0 | 0 | 0 | 0 | 0 | 0 | 3 | 7 | – | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Peroxisomes | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | – | 1 | 1 | 2 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 2 | 0 | 0 | 1 |
SpindlePole | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Vac/Vac Membrane | 0 | 0 | 1 | 1 | 0 | 1 | 2 | 5 | – | 3 | 2 | 4 | 1 | 3 | 1 | 0 | 1 | 2 | 0 | 1 | 0 | 0 | 1 | 0 |
Unique Cell Count | 276 | 127 | 548 | 432 | 624 | 634 | 1011 | 952 | 1069 | 422 | 874 | 362 | 529 | 378 | 205 | 439 | 282 | 276 | 143 | 557 | 304 | 677 | 781 | |
Labelled Cell Count | 528 | 188 | 1119 | 869 | 1274 | 1321 | 1972 | 1577 | 2075 | 853 | 1661 | 551 | 829 | 585 | 328 | 689 | 429 | 276 | 143 | 557 | 304 | 677 | 781 |
Screen | WT1 | WT2 | WT3 | RAP60 | RAP140 | RAP220 | RAP300 | RAP380 | RAP460 | RAP540 | RAP620 | RAP700 | HU80 | HU120 | HU160 | rpd3Δ_1 | rpd3Δ_2 | rpd3Δ_3 | AF100 | AF140 | AF180 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Mean Cell GFP Intensity (1e-4) | 21.3 | 20.2 | 21.7 | 22.2 | 21.3 | 19.1 | 19.2 | 19.2 | – | 18.6 | 18.3 | 18.2 | 25.2 | 25.1 | 26.0 | 16.4 | 17.9 | 21.8 | 24.8 | 25.1 | 27.5 |
Std Deviation (1e-4) | 4.0 | 3.4 | 3.5 | 3.7 | 3.6 | 3.3 | 3.5 | 4.0 | – | 4.0 | 4.3 | 4.2 | 4.8 | 4.5 | 5.7 | 5.4 | 6.2 | 8.5 | 3.7 | 4.4 | 5.3 |
Intensity Change (Log2) | – | – | – | 0.03 | -0.03 | -0.18 | -0.18 | -0.18 | – | -0.22 | -0.24 | -0.25 | 0.22 | 0.21 | 0.26 | -0.4 | -0.27 | 0.01 | 0.19 | 0.21 | 0.35 |
Localization | RAP60 | RAP140 | RAP220 | RAP300 | RAP380 | RAP460 | RAP540 | RAP620 | RAP700 | HU80 | HU120 | HU160 | rpd3Δ_1 | rpd3Δ_2 | rpd3Δ_3 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Cortical Patches | -1.2 | -2.4 | -2.2 | -5.9 | -12.2 | – | -6.4 | -2.8 | -3.4 | -6.5 | -5.4 | -6.4 | 2.3 | -0.9 | -3.6 |
Bud | -1.3 | 1.0 | 0.5 | 0.6 | 0.8 | – | 1.9 | 2.0 | 3.1 | -0.1 | -0.7 | -0.7 | 2.8 | 1.4 | 2.3 |
Bud Neck | 0 | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Bud Site | 0 | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Cell Periphery | 1.9 | -1.8 | -1.5 | -3.7 | -6.2 | – | -4.5 | -4.3 | -3.3 | -0.8 | 0 | 0.4 | -1.7 | -5.0 | -2.2 |
Cytoplasm | 1.1 | -0.7 | -0.3 | -2.0 | -2.9 | – | -3.7 | -1.4 | -3.4 | 3.2 | 1.8 | 3.3 | 4.7 | 6.4 | 7.8 |
Endoplasmic Reticulum | -1.6 | -2.7 | -1.1 | -2.0 | -6.4 | – | -8.2 | -8.5 | -12.2 | 2.6 | 2.2 | 0.2 | -16.4 | -20.2 | -17.7 |
Endosome | 0 | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Golgi | -1.2 | 2.6 | -4.9 | -0.4 | -1.8 | – | -2.4 | -4.2 | -5.8 | -10.8 | -11.1 | -8.6 | -0.3 | 0.6 | 0.8 |
Mitochondria | 3.2 | 5.5 | 12.6 | 8.8 | 9.6 | – | 15.8 | 17.9 | 17.9 | -4.5 | -5.5 | -4.6 | 2.1 | 4.7 | 3.0 |
Nucleus | 0 | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Nuclear Periphery | 0 | 0 | 0 | 0 | 3.2 | – | 3.1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Nucleolus | 0 | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Peroxisomes | 0 | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
SpindlePole | 0 | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Vacuole | 0 | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
R1 | R2 | R3 | ||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
G1 Pre-START | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | G1 Pre-START | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | G1 Pre-START | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | |
Concentration | 23.7559 | 27.3253 | 25.7326 | 26.2441 | 24.8533 | 25.2174 | 18.7696 | 27.0943 | 24.5067 | 24.5484 | 23.2121 | 24.5331 | 22.1749 | 25.9854 | 23.288 | 24.8025 | 23.1423 | 23.6643 |
Actin | 0.0704 | 0.0423 | 0.0393 | 0.0096 | 0.0444 | 0.0292 | 0.0827 | 0.0964 | 0.1331 | 0.1146 | 0.0669 | 0.043 | 0.1254 | 0.0764 | 0.1332 | 0.0351 | 0.049 | 0.0539 |
Bud | 0.0001 | 0.0001 | 0.0001 | 0 | 0.0003 | 0 | 0.0005 | 0.0001 | 0.0002 | 0.0002 | 0.0002 | 0.0001 | 0.0004 | 0.0006 | 0.0004 | 0.0001 | 0 | 0.0001 |
Bud Neck | 0.001 | 0.0006 | 0.0003 | 0.0003 | 0.0004 | 0.001 | 0.0012 | 0.0002 | 0.0008 | 0.0012 | 0.0005 | 0.0005 | 0.0007 | 0.0004 | 0.0017 | 0.0004 | 0.0002 | 0.0011 |
Bud Periphery | 0.0002 | 0.0001 | 0.0002 | 0 | 0.0003 | 0.0001 | 0.0005 | 0.0001 | 0.0003 | 0.0005 | 0.0003 | 0.0001 | 0.0006 | 0.0004 | 0.0009 | 0.0002 | 0 | 0.0002 |
Bud Site | 0.0004 | 0.0022 | 0.0007 | 0 | 0.0003 | 0 | 0.0059 | 0.0001 | 0.0002 | 0.0002 | 0.0001 | 0 | 0.0023 | 0.0016 | 0.0067 | 0.0001 | 0 | 0 |
Cell Periphery | 0.0007 | 0.0012 | 0.0005 | 0.0006 | 0.0002 | 0.0005 | 0.0004 | 0.0002 | 0.0005 | 0.0009 | 0.0004 | 0.0003 | 0.0005 | 0.0019 | 0.0018 | 0.0008 | 0.0002 | 0.0003 |
Cytoplasm | 0.003 | 0.0149 | 0.0013 | 0.0003 | 0.0016 | 0.0038 | 0.0017 | 0.0008 | 0.001 | 0.0007 | 0.0007 | 0.0006 | 0.0033 | 0.0025 | 0.0017 | 0.0006 | 0.0005 | 0.001 |
Cytoplasmic Foci | 0.01 | 0.0107 | 0.0073 | 0.0028 | 0.0076 | 0.005 | 0.0242 | 0.009 | 0.0038 | 0.0033 | 0.0025 | 0.0029 | 0.0063 | 0.0107 | 0.0113 | 0.0043 | 0.0056 | 0.0039 |
Eisosomes | 0.0034 | 0.0049 | 0.0016 | 0.0051 | 0.0018 | 0.0048 | 0.0026 | 0.0007 | 0.003 | 0.0052 | 0.0026 | 0.0008 | 0.0022 | 0.0013 | 0.0089 | 0.0045 | 0.0018 | 0.0006 |
Endoplasmic Reticulum | 0.0097 | 0.016 | 0.0103 | 0.0084 | 0.0068 | 0.0196 | 0.0031 | 0.0018 | 0.0087 | 0.0113 | 0.0092 | 0.0084 | 0.0174 | 0.0189 | 0.0091 | 0.01 | 0.0048 | 0.0148 |
Endosome | 0.0299 | 0.0208 | 0.0172 | 0.0122 | 0.0226 | 0.0199 | 0.035 | 0.0126 | 0.0135 | 0.0188 | 0.0221 | 0.012 | 0.024 | 0.0225 | 0.0277 | 0.0283 | 0.0173 | 0.0279 |
Golgi | 0.8408 | 0.8802 | 0.9136 | 0.9563 | 0.8937 | 0.9121 | 0.7652 | 0.876 | 0.8135 | 0.8341 | 0.8879 | 0.915 | 0.7836 | 0.8338 | 0.7707 | 0.8648 | 0.9166 | 0.8925 |
Lipid Particles | 0.0115 | 0.0046 | 0.0041 | 0.0031 | 0.0035 | 0.0023 | 0.0341 | 0.0014 | 0.0026 | 0.0041 | 0.001 | 0.0041 | 0.0119 | 0.0118 | 0.0099 | 0.0449 | 0.0026 | 0.0008 |
Mitochondria | 0.0044 | 0.0003 | 0.0013 | 0.0004 | 0.0057 | 0.0007 | 0.0038 | 0.0003 | 0.0035 | 0.0029 | 0.0045 | 0.0018 | 0.0061 | 0.014 | 0.0061 | 0.0039 | 0.0006 | 0.0015 |
None | 0.0015 | 0.0001 | 0.0003 | 0 | 0.0007 | 0 | 0.0021 | 0 | 0.0011 | 0.0001 | 0.0001 | 0.0001 | 0.0007 | 0.0004 | 0.0011 | 0.0001 | 0 | 0 |
Nuclear Periphery | 0.0054 | 0.0003 | 0.0003 | 0.0004 | 0.0049 | 0.0004 | 0.0112 | 0.0001 | 0.0094 | 0.0006 | 0.0002 | 0.0074 | 0.01 | 0.0008 | 0.0033 | 0.0005 | 0.0001 | 0.0004 |
Nucleolus | 0.0002 | 0 | 0 | 0 | 0.0001 | 0 | 0.001 | 0 | 0.0001 | 0 | 0 | 0 | 0.0001 | 0.0002 | 0.0002 | 0 | 0 | 0 |
Nucleus | 0.0005 | 0.0001 | 0 | 0 | 0.0009 | 0 | 0.0042 | 0 | 0.0019 | 0 | 0 | 0.0001 | 0.0006 | 0.0001 | 0.0005 | 0 | 0 | 0 |
Peroxisomes | 0.0011 | 0.0001 | 0.0009 | 0 | 0.0009 | 0 | 0.0076 | 0.0001 | 0.0016 | 0 | 0.0001 | 0.0001 | 0.0013 | 0.001 | 0.001 | 0.0001 | 0 | 0 |
Punctate Nuclear | 0.0033 | 0.0001 | 0.0001 | 0 | 0.0024 | 0 | 0.0106 | 0 | 0.0004 | 0 | 0 | 0.0001 | 0.0003 | 0.0001 | 0.0019 | 0 | 0 | 0 |
Vacuole | 0.0008 | 0.0002 | 0.0002 | 0.0001 | 0.0003 | 0.0001 | 0.001 | 0 | 0.0002 | 0.0003 | 0.0002 | 0.0002 | 0.0007 | 0.0003 | 0.0007 | 0.0004 | 0.0001 | 0.0003 |
Vacuole Periphery | 0.0017 | 0.0002 | 0.0004 | 0.0004 | 0.0006 | 0.0003 | 0.0014 | 0.0001 | 0.0006 | 0.0008 | 0.0006 | 0.0026 | 0.0017 | 0.0004 | 0.0012 | 0.001 | 0.0003 | 0.0006 |
R1 | R2 | |||||||||
---|---|---|---|---|---|---|---|---|---|---|
G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | |
Gene Expression | 106.3331 | 122.0113 | 101.8548 | 115.5104 | 98.2549 | 91.6021 | 113.7724 | 111.2196 | 100.95 | 114.0765 |
Translational Efficiency | 1.4114 | 1.2844 | 1.4044 | 1.0812 | 1.3486 | 1.6687 | 1.3094 | 1.2698 | 1.3236 | 1.1835 |
Dataset | Hit |
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Protein Concentration | ✔ |
Protein Localization | ✔ |
Gene Expression | ✔ |
Translational Efficiency | ✘ |
Temp | Actin Patch (Sac6-tdTomato) | Cortical Patch (Sla1-GFP) | Late Endosome (Snf7-GFP) | Vacuole (Vph1-GFP) |
---|---|---|---|---|
37℃ | ||||
RT |
Gene / Allele | Actin Patch (Sac6-tdTomato) | Cortical Patch (Sla1-GFP) | Late Endosome (Snf7-GFP) | Vacuole (Sac6-tdTomato) |
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Gene | Images |
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Gene | Images |
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