Standard name | |
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Human Ortholog | |
Description | Component of cytosolic iron-sulfur protein assembly (CIA) machinery; acts at a late step of Fe-S cluster assembly; forms the CIA targeting complex with Cia1p and Cia2p that directs Fe-S cluster incorporation and maturation of a subset of cytosolic and nuclear proteins involved in methionine biosynthesis, DNA replication and repair, transcription, and telomere maintenance; ortholog of human MMS19 |
ensLOC | DeepLoc | |||||||||||||||||||||||
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Localization | WT1 | WT2 | WT3 | RAP60 | RAP140 | RAP220 | RAP300 | RAP380 | RAP460 | RAP540 | RAP620 | RAP700 | HU80 | HU120 | HU160 | rpd3Δ_1 | rpd3Δ_2 | rpd3Δ_3 | WT1 | WT2 | WT3 | AF100 | AF140 | AF180 |
Cortical Patches | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 1 |
Bud | 0 | 1 | 1 | 2 | 3 | 3 | 2 | 3 | 4 | 6 | 2 | 4 | 0 | 0 | 2 | 2 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Bud Neck | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Bud Site | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | – | – | – | – | – | – |
Cell Periphery | 5 | 0 | 3 | 1 | 5 | 5 | 15 | 16 | 9 | 11 | 8 | 9 | 0 | 6 | 7 | 32 | 26 | 53 | 0 | 0 | 0 | 0 | 0 | 0 |
Cytoplasm | 180 | 31 | 87 | 189 | 417 | 217 | 492 | 405 | 218 | 261 | 131 | 266 | 70 | 340 | 376 | 535 | 279 | 696 | 181 | 54 | 96 | 86 | 211 | 334 |
Endoplasmic Reticulum | 1 | 0 | 0 | 1 | 4 | 0 | 3 | 2 | 1 | 1 | 1 | 4 | 0 | 0 | 4 | 28 | 8 | 29 | 0 | 0 | 1 | 0 | 4 | 7 |
Endosome | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 2 | 2 | 2 | 0 | 0 | 0 | 0 | 0 | 0 |
Golgi | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 1 | 1 | 0 | 0 | 0 | 0 | 1 |
Mitochondria | 0 | 1 | 2 | 7 | 4 | 29 | 95 | 86 | 91 | 98 | 72 | 142 | 0 | 1 | 10 | 8 | 5 | 8 | 0 | 0 | 0 | 0 | 0 | 0 |
Nucleus | 1 | 0 | 0 | 0 | 0 | 1 | 1 | 2 | 0 | 1 | 0 | 0 | 1 | 0 | 0 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 |
Nuclear Periphery | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Nucleolus | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Peroxisomes | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
SpindlePole | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Vac/Vac Membrane | 0 | 0 | 0 | 0 | 0 | 1 | 5 | 12 | 0 | 1 | 0 | 6 | 0 | 1 | 0 | 14 | 12 | 23 | 0 | 1 | 1 | 0 | 2 | 0 |
Unique Cell Count | 184 | 32 | 87 | 191 | 420 | 226 | 544 | 468 | 270 | 318 | 180 | 363 | 71 | 342 | 385 | 555 | 291 | 729 | 185 | 57 | 101 | 90 | 225 | 354 |
Labelled Cell Count | 187 | 33 | 93 | 200 | 433 | 256 | 613 | 529 | 324 | 380 | 214 | 432 | 71 | 348 | 399 | 625 | 334 | 813 | 185 | 57 | 101 | 90 | 225 | 354 |
Screen | WT1 | WT2 | WT3 | RAP60 | RAP140 | RAP220 | RAP300 | RAP380 | RAP460 | RAP540 | RAP620 | RAP700 | HU80 | HU120 | HU160 | rpd3Δ_1 | rpd3Δ_2 | rpd3Δ_3 | AF100 | AF140 | AF180 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Mean Cell GFP Intensity (1e-4) | 10.0 | 7.4 | 5.9 | 6.2 | 6.1 | 5.4 | 5.0 | 5.0 | 4.5 | 4.5 | 4.4 | 4.2 | 9.5 | 9.5 | 8.3 | 9.3 | 10.3 | 10.7 | 9.1 | 8.8 | 9.5 |
Std Deviation (1e-4) | 1.2 | 0.9 | 0.7 | 0.8 | 0.8 | 0.8 | 0.7 | 0.8 | 1.0 | 0.8 | 0.8 | 0.8 | 1.1 | 1.1 | 1.1 | 1.2 | 1.4 | 1.3 | 1.3 | 1.3 | 1.4 |
Intensity Change (Log2) | – | – | – | 0.07 | 0.04 | -0.14 | -0.24 | -0.24 | -0.4 | -0.41 | -0.42 | -0.51 | 0.68 | 0.68 | 0.48 | 0.65 | 0.79 | 0.85 | 0.62 | 0.57 | 0.68 |
Localization | RAP60 | RAP140 | RAP220 | RAP300 | RAP380 | RAP460 | RAP540 | RAP620 | RAP700 | HU80 | HU120 | HU160 | rpd3Δ_1 | rpd3Δ_2 | rpd3Δ_3 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Cortical Patches | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Bud | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Bud Neck | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Bud Site | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Cell Periphery | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1.7 | 1.3 |
Cytoplasm | -1.0 | -0.8 | -1.9 | -3.0 | -3.6 | -4.4 | -4.3 | -5.4 | -5.4 | -1.1 | -0.7 | -1.4 | -1.8 | -1.9 | -2.0 |
Endoplasmic Reticulum | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Endosome | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Golgi | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Mitochondria | 0 | 0 | 2.8 | 3.6 | 3.8 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Nucleus | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Nuclear Periphery | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Nucleolus | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Peroxisomes | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
SpindlePole | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Vacuole | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
R1 | R2 | R3 | ||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
G1 Pre-START | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | G1 Pre-START | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | G1 Pre-START | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | |
Concentration | 5.0885 | 7.1718 | 6.7338 | 5.5693 | 5.3045 | 6.4574 | 6.0185 | 8.3459 | 7.5829 | 7.09 | 6.9565 | 7.3704 | 3.6597 | 4.4491 | 3.592 | 3.9334 | 3.903 | 3.83 |
Actin | 0.057 | 0.0004 | 0.0083 | 0.0005 | 0.0266 | 0.0013 | 0.0172 | 0.0002 | 0.0324 | 0.0032 | 0.0003 | 0.0001 | 0.0008 | 0.0002 | 0.0154 | 0.0002 | 0.0001 | 0.0139 |
Bud | 0.0014 | 0.0001 | 0.0095 | 0.0004 | 0.0005 | 0.0002 | 0.002 | 0.0003 | 0.0008 | 0.0003 | 0.0003 | 0 | 0 | 0.0001 | 0.0002 | 0.0002 | 0.0001 | 0.0001 |
Bud Neck | 0.0085 | 0.0001 | 0.0007 | 0.0003 | 0.002 | 0.0032 | 0.0015 | 0.0001 | 0.0015 | 0.0008 | 0.0003 | 0.0005 | 0.0001 | 0.0001 | 0.0005 | 0.0002 | 0.0002 | 0.0015 |
Bud Periphery | 0.0025 | 0.0001 | 0.0022 | 0.0002 | 0.0007 | 0.0002 | 0.0018 | 0.0001 | 0.0008 | 0.0002 | 0.0003 | 0 | 0 | 0 | 0.0002 | 0 | 0 | 0.0001 |
Bud Site | 0.0039 | 0.0005 | 0.002 | 0.0002 | 0.0022 | 0.0001 | 0.0037 | 0.0008 | 0.0117 | 0.002 | 0.0002 | 0 | 0.0001 | 0.0003 | 0.0003 | 0.0001 | 0 | 0.0001 |
Cell Periphery | 0.0013 | 0.0002 | 0.0003 | 0.0002 | 0.0002 | 0.0001 | 0.0004 | 0.0001 | 0.0002 | 0.0001 | 0.0001 | 0 | 0.0001 | 0.0001 | 0.0001 | 0 | 0 | 0.0001 |
Cytoplasm | 0.7743 | 0.9892 | 0.9192 | 0.9011 | 0.7571 | 0.9742 | 0.8461 | 0.9907 | 0.9044 | 0.9187 | 0.9079 | 0.9891 | 0.9266 | 0.9959 | 0.9115 | 0.9724 | 0.991 | 0.9586 |
Cytoplasmic Foci | 0.0183 | 0.0018 | 0.0087 | 0.0078 | 0.0208 | 0.0034 | 0.0211 | 0.0025 | 0.0072 | 0.0175 | 0.0058 | 0.0028 | 0.0035 | 0.0008 | 0.0238 | 0.0083 | 0.002 | 0.0041 |
Eisosomes | 0.0006 | 0 | 0.0001 | 0 | 0.0005 | 0 | 0.0001 | 0 | 0.0001 | 0 | 0 | 0 | 0.0001 | 0 | 0.0002 | 0 | 0 | 0.0004 |
Endoplasmic Reticulum | 0.0303 | 0.0019 | 0.0131 | 0.0564 | 0.0046 | 0.0024 | 0.0065 | 0.001 | 0.0015 | 0.0025 | 0.0016 | 0.0021 | 0.008 | 0.0005 | 0.0023 | 0.0017 | 0.0016 | 0.0088 |
Endosome | 0.0209 | 0.0013 | 0.0119 | 0.0169 | 0.0295 | 0.0039 | 0.0283 | 0.0012 | 0.0124 | 0.0056 | 0.0402 | 0.0014 | 0.0026 | 0.0003 | 0.0091 | 0.0084 | 0.0017 | 0.0032 |
Golgi | 0.0114 | 0.0002 | 0.0066 | 0.0007 | 0.0232 | 0.0019 | 0.0115 | 0.0001 | 0.0096 | 0.0058 | 0.0025 | 0.0001 | 0.0003 | 0.0001 | 0.0033 | 0.0004 | 0.0001 | 0.0009 |
Lipid Particles | 0.0069 | 0 | 0.0028 | 0.0001 | 0.0149 | 0.0011 | 0.0115 | 0 | 0.0033 | 0.0046 | 0.0027 | 0 | 0.0002 | 0 | 0.0022 | 0 | 0 | 0.0004 |
Mitochondria | 0.0287 | 0.0002 | 0.003 | 0.0006 | 0.0835 | 0.0041 | 0.0122 | 0 | 0.0038 | 0.022 | 0.0039 | 0.0001 | 0.0002 | 0 | 0.0013 | 0.0001 | 0 | 0.0003 |
None | 0.0096 | 0.0019 | 0.0029 | 0.0029 | 0.0035 | 0.001 | 0.01 | 0.0014 | 0.0025 | 0.0017 | 0.002 | 0.0029 | 0.051 | 0.0012 | 0.0227 | 0.0023 | 0.0019 | 0.0056 |
Nuclear Periphery | 0.0042 | 0.0002 | 0.001 | 0.0034 | 0.0107 | 0.0002 | 0.0022 | 0.0002 | 0.0018 | 0.0005 | 0.009 | 0.0002 | 0.0022 | 0.0001 | 0.001 | 0.0005 | 0.0002 | 0.0005 |
Nucleolus | 0.0003 | 0 | 0.0001 | 0 | 0.0006 | 0 | 0.0018 | 0 | 0.0001 | 0.0001 | 0.0011 | 0 | 0.0002 | 0 | 0.0001 | 0 | 0 | 0 |
Nucleus | 0.0018 | 0.0006 | 0.0014 | 0.0016 | 0.0015 | 0.0006 | 0.0049 | 0.0005 | 0.001 | 0.0008 | 0.0049 | 0.0005 | 0.0018 | 0.0003 | 0.0005 | 0.0008 | 0.0005 | 0.0004 |
Peroxisomes | 0.0081 | 0 | 0.0029 | 0.0001 | 0.0116 | 0.0005 | 0.0066 | 0 | 0.002 | 0.012 | 0.0003 | 0 | 0 | 0 | 0.0029 | 0 | 0 | 0.0002 |
Punctate Nuclear | 0.0014 | 0 | 0.0008 | 0.0002 | 0.0026 | 0.0001 | 0.0019 | 0.0001 | 0.0019 | 0.0002 | 0.001 | 0 | 0.0013 | 0 | 0.0005 | 0.0002 | 0 | 0.0002 |
Vacuole | 0.0073 | 0.0011 | 0.002 | 0.0053 | 0.0015 | 0.0012 | 0.0062 | 0.0006 | 0.0008 | 0.0011 | 0.0088 | 0.0003 | 0.0007 | 0.0002 | 0.0015 | 0.0039 | 0.0003 | 0.0005 |
Vacuole Periphery | 0.0014 | 0.0001 | 0.0004 | 0.001 | 0.0019 | 0.0003 | 0.0024 | 0.0001 | 0.0003 | 0.0003 | 0.0068 | 0.0001 | 0.0001 | 0 | 0.0004 | 0.0004 | 0.0001 | 0.0001 |
R1 | R2 | |||||||||
---|---|---|---|---|---|---|---|---|---|---|
G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | |
Gene Expression | 25.8138 | 22.5985 | 22.4375 | 30.4207 | 22.3894 | 23.8423 | 28.7225 | 27.2596 | 26.1342 | 32.218 |
Translational Efficiency | 0.8948 | 1.0184 | 0.8696 | 0.6095 | 0.7682 | 0.7751 | 0.6683 | 0.672 | 0.7257 | 0.5807 |
Dataset | Hit |
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Protein Concentration | ✘ |
Protein Localization | ✘ |
Gene Expression | ✘ |
Translational Efficiency | ✘ |
Temp | Actin Patch (Sac6-tdTomato) | Cortical Patch (Sla1-GFP) | Late Endosome (Snf7-GFP) | Vacuole (Vph1-GFP) |
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37℃ | ||||
RT |
Gene / Allele | Actin Patch (Sac6-tdTomato) | Cortical Patch (Sla1-GFP) | Late Endosome (Snf7-GFP) | Vacuole (Sac6-tdTomato) |
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Gene | Images |
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Gene | Images |
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