Standard name | |
---|---|
Human Ortholog | |
Description | Type I membrane protein involved in autophagy and the Cvt pathway; may be involved in membrane delivery to the phagophore assembly site |
ensLOC | DeepLoc | |||||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Localization | WT1 | WT2 | WT3 | RAP60 | RAP140 | RAP220 | RAP300 | RAP380 | RAP460 | RAP540 | RAP620 | RAP700 | HU80 | HU120 | HU160 | rpd3Δ_1 | rpd3Δ_2 | rpd3Δ_3 | WT1 | WT2 | WT3 | AF100 | AF140 | AF180 |
Cortical Patches | 8 | 7 | 2 | 18 | 25 | 2 | 11 | 27 | 5 | 10 | 4 | 9 | 35 | 32 | 28 | 14 | 7 | 2 | 1 | 0 | 1 | 3 | 6 | 7 |
Bud | 0 | 1 | 0 | 0 | 4 | 2 | 1 | 16 | 7 | 10 | 4 | 4 | 2 | 1 | 4 | 1 | 0 | 0 | 1 | 2 | 0 | 1 | 1 | 0 |
Bud Neck | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Bud Site | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | – | – | – | – | – | – |
Cell Periphery | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 3 | 0 | 3 | 1 | 2 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Cytoplasm | 155 | 89 | 39 | 60 | 135 | 29 | 140 | 209 | 66 | 124 | 63 | 91 | 74 | 53 | 91 | 34 | 16 | 5 | 17 | 9 | 2 | 3 | 8 | 10 |
Endoplasmic Reticulum | 31 | 25 | 24 | 30 | 22 | 9 | 31 | 7 | 2 | 15 | 1 | 12 | 105 | 90 | 50 | 6 | 2 | 1 | 25 | 11 | 7 | 30 | 19 | 29 |
Endosome | 62 | 3 | 18 | 28 | 62 | 9 | 42 | 84 | 13 | 30 | 10 | 30 | 36 | 86 | 106 | 21 | 17 | 2 | 153 | 61 | 49 | 162 | 193 | 196 |
Golgi | 21 | 9 | 15 | 33 | 18 | 0 | 5 | 3 | 0 | 1 | 0 | 0 | 144 | 245 | 254 | 29 | 17 | 17 | 45 | 22 | 19 | 157 | 148 | 233 |
Mitochondria | 3 | 3 | 0 | 1 | 0 | 17 | 1 | 8 | 13 | 17 | 17 | 21 | 5 | 17 | 15 | 7 | 6 | 0 | 7 | 3 | 4 | 9 | 6 | 4 |
Nucleus | 0 | 2 | 0 | 1 | 0 | 1 | 0 | 2 | 1 | 2 | 1 | 2 | 2 | 0 | 1 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 1 | 0 |
Nuclear Periphery | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 6 | 1 | 1 | 3 | 2 | 2 |
Nucleolus | 2 | 1 | 1 | 0 | 0 | 1 | 0 | 1 | 0 | 0 | 2 | 0 | 0 | 3 | 2 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 1 | 0 |
Peroxisomes | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 |
SpindlePole | 0 | 0 | 0 | 0 | 3 | 0 | 2 | 3 | 1 | 3 | 0 | 2 | 2 | 1 | 3 | 1 | 1 | 0 | 1 | 0 | 0 | 1 | 1 | 0 |
Vac/Vac Membrane | 273 | 125 | 55 | 30 | 70 | 16 | 45 | 71 | 14 | 25 | 13 | 28 | 82 | 151 | 159 | 47 | 44 | 14 | 249 | 163 | 63 | 92 | 96 | 75 |
Unique Cell Count | 460 | 229 | 130 | 161 | 281 | 69 | 244 | 368 | 107 | 204 | 102 | 174 | 378 | 538 | 570 | 117 | 89 | 38 | 514 | 281 | 152 | 470 | 494 | 566 |
Labelled Cell Count | 555 | 265 | 154 | 201 | 339 | 86 | 279 | 435 | 123 | 240 | 117 | 202 | 487 | 680 | 713 | 161 | 111 | 41 | 514 | 281 | 152 | 470 | 494 | 566 |
Screen | WT1 | WT2 | WT3 | RAP60 | RAP140 | RAP220 | RAP300 | RAP380 | RAP460 | RAP540 | RAP620 | RAP700 | HU80 | HU120 | HU160 | rpd3Δ_1 | rpd3Δ_2 | rpd3Δ_3 | AF100 | AF140 | AF180 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Mean Cell GFP Intensity (1e-4) | 11.1 | 12.7 | 12.6 | 12.1 | 11.9 | 6.4 | 8.8 | 8.4 | 7.7 | 7.5 | 7.2 | 7.4 | 12.5 | 13.0 | 12.9 | 14.6 | 14.4 | 16.1 | 11.5 | 11.9 | 12.1 |
Std Deviation (1e-4) | 2.1 | 2.4 | 2.2 | 1.7 | 1.9 | 1.7 | 1.6 | 1.5 | 1.5 | 1.5 | 1.5 | 1.5 | 2.1 | 2.3 | 2.3 | 3.5 | 3.0 | 3.3 | 2.3 | 2.4 | 2.3 |
Intensity Change (Log2) | – | – | – | -0.06 | -0.09 | -0.97 | -0.52 | -0.59 | -0.7 | -0.74 | -0.81 | -0.77 | -0.01 | 0.04 | 0.03 | 0.21 | 0.19 | 0.35 | -0.13 | -0.08 | -0.06 |
Localization | RAP60 | RAP140 | RAP220 | RAP300 | RAP380 | RAP460 | RAP540 | RAP620 | RAP700 | HU80 | HU120 | HU160 | rpd3Δ_1 | rpd3Δ_2 | rpd3Δ_3 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Cortical Patches | 3.2 | 2.8 | 0 | 0 | 2.4 | 0 | 0 | 0 | 0 | 2.9 | 2.1 | 1.7 | 3.3 | 0 | 0 |
Bud | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Bud Neck | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Bud Site | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Cell Periphery | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Cytoplasm | 1.3 | 3.4 | 1.7 | 5.0 | 5.3 | 4.9 | 5.5 | 4.8 | 3.9 | -2.5 | -6.0 | -3.7 | -0.2 | -2.0 | -2.1 |
Endoplasmic Reticulum | 0 | -3.2 | -1.0 | -1.5 | -6.7 | -4.1 | -3.1 | -4.3 | -3.1 | 2.1 | -0.5 | -3.2 | -3.2 | -3.6 | -2.4 |
Endosome | 0.8 | 2.0 | -0.2 | 0.8 | 2.2 | -0.4 | 0.2 | -0.9 | 0.8 | -1.4 | 0.6 | 1.3 | 0.9 | 1.0 | 0 |
Golgi | 2.0 | -1.8 | -2.9 | -3.9 | 0 | -3.6 | -4.6 | -3.5 | -4.6 | 5.6 | 7.1 | 7.0 | 2.7 | 1.6 | 4.6 |
Mitochondria | 0 | 0 | 5.9 | 0 | 0 | 4.1 | 3.4 | 4.8 | 4.1 | 0 | 0 | 0 | 0 | 0 | 0 |
Nucleus | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Nuclear Periphery | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Nucleolus | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Peroxisomes | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
SpindlePole | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Vacuole | -4.4 | -3.6 | -2.7 | -5.0 | -5.2 | -4.9 | -6.3 | -4.9 | -5.1 | -4.6 | -3.2 | -3.2 | -0.3 | 1.0 | -0.6 |
R1 | R2 | R3 | ||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
G1 Pre-START | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | G1 Pre-START | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | G1 Pre-START | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | |
Concentration | 5.0764 | 6.5629 | 6.1725 | 5.3631 | 4.4039 | 5.6988 | 6.8614 | 8.4494 | 8.1109 | 8.1714 | 7.6611 | 8.4652 | 8.9119 | 10.398 | 9.6257 | 9.9273 | 9.2026 | 10.0704 |
Actin | 0.0159 | 0.0002 | 0.0078 | 0 | 0.0155 | 0.0001 | 0.0227 | 0 | 0.0102 | 0 | 0.0016 | 0.0007 | 0.0398 | 0.0011 | 0.0082 | 0.0019 | 0 | 0.0001 |
Bud | 0.0002 | 0.0006 | 0.0013 | 0.0001 | 0.0003 | 0.0001 | 0.0005 | 0.0002 | 0.0005 | 0.0003 | 0.0002 | 0.0002 | 0.0005 | 0.0003 | 0.0013 | 0.0001 | 0 | 0.0004 |
Bud Neck | 0.0003 | 0.0003 | 0.0006 | 0.0001 | 0.001 | 0.0001 | 0.001 | 0.0002 | 0.0003 | 0.0002 | 0.0004 | 0.0004 | 0.0071 | 0.0002 | 0.0004 | 0.0001 | 0.0001 | 0.0004 |
Bud Periphery | 0.0002 | 0.0003 | 0.0008 | 0.0001 | 0.0004 | 0.0001 | 0.0006 | 0.0002 | 0.0006 | 0.0002 | 0.0002 | 0.0002 | 0.0006 | 0.0002 | 0.001 | 0.0001 | 0 | 0.0004 |
Bud Site | 0.0004 | 0.0005 | 0.0017 | 0 | 0.0015 | 0.0001 | 0.0013 | 0.001 | 0.0009 | 0.0002 | 0.0004 | 0.0001 | 0.0026 | 0.0004 | 0.001 | 0.0002 | 0 | 0.0003 |
Cell Periphery | 0.0001 | 0.0001 | 0.0002 | 0 | 0.0001 | 0 | 0.0003 | 0.0002 | 0.0002 | 0.0001 | 0.0001 | 0.0001 | 0.0006 | 0.0002 | 0.0003 | 0.0001 | 0 | 0.0001 |
Cytoplasm | 0.019 | 0.0465 | 0.0421 | 0.0096 | 0.008 | 0.0202 | 0.0311 | 0.0646 | 0.0321 | 0.0662 | 0.0165 | 0.0419 | 0.0605 | 0.0962 | 0.0356 | 0.0071 | 0.0038 | 0.0458 |
Cytoplasmic Foci | 0.0251 | 0.0308 | 0.0292 | 0.0094 | 0.0234 | 0.0192 | 0.0226 | 0.0214 | 0.0255 | 0.0075 | 0.0199 | 0.0126 | 0.0229 | 0.02 | 0.0165 | 0.0243 | 0.0141 | 0.0123 |
Eisosomes | 0.0001 | 0 | 0.0001 | 0 | 0.0001 | 0 | 0.0002 | 0 | 0.0001 | 0 | 0.0001 | 0 | 0.0005 | 0 | 0 | 0 | 0 | 0 |
Endoplasmic Reticulum | 0.0162 | 0.0099 | 0.012 | 0.0043 | 0.0136 | 0.0074 | 0.0199 | 0.0108 | 0.0105 | 0.0038 | 0.003 | 0.0126 | 0.035 | 0.0164 | 0.0129 | 0.0017 | 0.0025 | 0.0127 |
Endosome | 0.6553 | 0.6092 | 0.6068 | 0.6107 | 0.7284 | 0.6861 | 0.5195 | 0.4278 | 0.4965 | 0.3602 | 0.5259 | 0.4948 | 0.4255 | 0.4709 | 0.4354 | 0.4713 | 0.5013 | 0.4541 |
Golgi | 0.0567 | 0.0543 | 0.0606 | 0.0103 | 0.0609 | 0.0586 | 0.0338 | 0.012 | 0.0253 | 0.0063 | 0.014 | 0.0201 | 0.0519 | 0.0402 | 0.0472 | 0.0289 | 0.0419 | 0.0364 |
Lipid Particles | 0.0149 | 0.0018 | 0.003 | 0.0008 | 0.0082 | 0.0013 | 0.0117 | 0.0015 | 0.0094 | 0.0004 | 0.0184 | 0.0061 | 0.0193 | 0.0026 | 0.0063 | 0.0107 | 0.0004 | 0.0011 |
Mitochondria | 0.0134 | 0.0066 | 0.0096 | 0.0018 | 0.0023 | 0.0065 | 0.0163 | 0.0009 | 0.0134 | 0.0006 | 0.003 | 0.0027 | 0.0079 | 0.0073 | 0.0107 | 0.0039 | 0.0005 | 0.0097 |
None | 0.0013 | 0.0004 | 0.0097 | 0.0001 | 0.0005 | 0.0096 | 0.0028 | 0.0002 | 0.0008 | 0.0002 | 0.0004 | 0.0004 | 0.0027 | 0.0068 | 0.0005 | 0.0002 | 0 | 0.0004 |
Nuclear Periphery | 0.0174 | 0.0085 | 0.0182 | 0.0052 | 0.0057 | 0.0059 | 0.0382 | 0.0129 | 0.0185 | 0.0084 | 0.0035 | 0.0256 | 0.0756 | 0.023 | 0.0254 | 0.0042 | 0.008 | 0.0181 |
Nucleolus | 0.0002 | 0.0001 | 0.0002 | 0 | 0.0002 | 0 | 0.001 | 0.0002 | 0.0007 | 0.0002 | 0.0009 | 0.0001 | 0.0006 | 0.0001 | 0.0006 | 0.0001 | 0 | 0.0002 |
Nucleus | 0.001 | 0.0009 | 0.0015 | 0.0004 | 0.0005 | 0.0005 | 0.0107 | 0.0024 | 0.0022 | 0.0019 | 0.0009 | 0.0022 | 0.0231 | 0.0026 | 0.0031 | 0.0006 | 0.0005 | 0.0066 |
Peroxisomes | 0.0034 | 0.0004 | 0.0034 | 0 | 0.0043 | 0.0001 | 0.003 | 0.0001 | 0.0022 | 0 | 0.0101 | 0.0002 | 0.0013 | 0.0002 | 0.0006 | 0.0117 | 0 | 0.0001 |
Punctate Nuclear | 0.0009 | 0.0001 | 0.0007 | 0 | 0.002 | 0.0001 | 0.0042 | 0.0001 | 0.0008 | 0.0001 | 0.0041 | 0.0006 | 0.0038 | 0.0003 | 0.0002 | 0.0006 | 0 | 0.0002 |
Vacuole | 0.092 | 0.1447 | 0.1181 | 0.163 | 0.0674 | 0.0888 | 0.17 | 0.329 | 0.2353 | 0.3637 | 0.2606 | 0.2099 | 0.1419 | 0.2082 | 0.2465 | 0.2864 | 0.2513 | 0.192 |
Vacuole Periphery | 0.0658 | 0.0839 | 0.0724 | 0.1837 | 0.0557 | 0.0951 | 0.0887 | 0.1141 | 0.114 | 0.1797 | 0.1162 | 0.1685 | 0.0764 | 0.1027 | 0.1463 | 0.1458 | 0.1753 | 0.2086 |
R1 | R2 | |||||||||
---|---|---|---|---|---|---|---|---|---|---|
G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | |
Gene Expression | 60.8495 | 62.8573 | 62.7884 | 65.7837 | 64.8684 | 63.5187 | 59.8883 | 55.6814 | 71.9096 | 64.0543 |
Translational Efficiency | 1.2778 | 1.3181 | 1.288 | 1.4284 | 1.3054 | 1.2321 | 1.2483 | 1.4881 | 1.0406 | 1.1655 |
Dataset | Hit |
---|---|
Protein Concentration | ✔ |
Protein Localization | ✘ |
Gene Expression | ✘ |
Translational Efficiency | ✘ |
Temp | Actin Patch (Sac6-tdTomato) | Cortical Patch (Sla1-GFP) | Late Endosome (Snf7-GFP) | Vacuole (Vph1-GFP) |
---|---|---|---|---|
37℃ | ||||
RT |
Gene / Allele | Actin Patch (Sac6-tdTomato) | Cortical Patch (Sla1-GFP) | Late Endosome (Snf7-GFP) | Vacuole (Sac6-tdTomato) |
---|
Gene | Images |
---|
Gene | Images |
---|