Standard name | |
---|---|
Human Ortholog | |
Description | Subunit of the SF3a splicing factor complex; required for spliceosome assembly |
ensLOC | DeepLoc | |||||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Localization | WT1 | WT2 | WT3 | RAP60 | RAP140 | RAP220 | RAP300 | RAP380 | RAP460 | RAP540 | RAP620 | RAP700 | HU80 | HU120 | HU160 | rpd3Δ_1 | rpd3Δ_2 | rpd3Δ_3 | WT1 | WT2 | WT3 | AF100 | AF140 | AF180 |
Cortical Patches | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 3 | 0 | 0 | 0 |
Bud | 0 | 1 | 0 | 0 | 0 | 0 | 4 | 1 | 5 | 2 | 6 | 6 | 0 | 2 | 0 | 1 | 0 | 0 | 2 | 3 | 3 | 1 | 3 | 6 |
Bud Neck | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 1 | 0 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Bud Site | 0 | 0 | 0 | 0 | 1 | 7 | 12 | 8 | 16 | 14 | 23 | 11 | 0 | 0 | 0 | 0 | 0 | 0 | – | – | – | – | – | – |
Cell Periphery | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Cytoplasm | 2 | 11 | 14 | 12 | 12 | 14 | 19 | 30 | 16 | 21 | 10 | 8 | 11 | 33 | 56 | 19 | 18 | 22 | 0 | 5 | 4 | 7 | 13 | 14 |
Endoplasmic Reticulum | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 7 | 4 | 7 | 0 | 0 | 1 | 0 | 1 | 1 |
Endosome | 1 | 0 | 3 | 0 | 0 | 3 | 3 | 7 | 0 | 2 | 0 | 0 | 0 | 0 | 1 | 0 | 1 | 0 | 3 | 3 | 2 | 1 | 2 | 4 |
Golgi | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 1 | 0 | 0 | 1 |
Mitochondria | 8 | 74 | 1 | 6 | 5 | 42 | 87 | 65 | 272 | 201 | 202 | 188 | 3 | 6 | 1 | 10 | 13 | 4 | 0 | 3 | 3 | 1 | 3 | 8 |
Nucleus | 174 | 227 | 401 | 275 | 315 | 483 | 690 | 622 | 416 | 543 | 492 | 470 | 116 | 293 | 250 | 160 | 139 | 152 | 176 | 225 | 396 | 115 | 248 | 179 |
Nuclear Periphery | 1 | 0 | 8 | 2 | 3 | 10 | 19 | 4 | 4 | 10 | 2 | 4 | 0 | 2 | 0 | 2 | 3 | 3 | 0 | 0 | 2 | 0 | 3 | 1 |
Nucleolus | 9 | 4 | 1 | 2 | 3 | 7 | 13 | 25 | 10 | 24 | 25 | 15 | 1 | 1 | 0 | 3 | 0 | 2 | 1 | 1 | 4 | 3 | 6 | 8 |
Peroxisomes | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
SpindlePole | 0 | 0 | 1 | 1 | 0 | 5 | 6 | 10 | 2 | 1 | 5 | 5 | 0 | 1 | 4 | 1 | 0 | 0 | 0 | 0 | 2 | 0 | 2 | 3 |
Vac/Vac Membrane | 2 | 5 | 5 | 2 | 7 | 8 | 13 | 30 | 3 | 9 | 7 | 10 | 0 | 6 | 2 | 4 | 10 | 7 | 7 | 7 | 17 | 9 | 20 | 38 |
Unique Cell Count | 187 | 256 | 424 | 290 | 337 | 522 | 772 | 727 | 498 | 648 | 576 | 556 | 127 | 330 | 312 | 188 | 169 | 182 | 193 | 254 | 453 | 142 | 310 | 273 |
Labelled Cell Count | 197 | 322 | 436 | 300 | 346 | 579 | 867 | 804 | 745 | 827 | 774 | 718 | 132 | 344 | 315 | 207 | 188 | 197 | 193 | 254 | 453 | 142 | 310 | 273 |
Screen | WT1 | WT2 | WT3 | RAP60 | RAP140 | RAP220 | RAP300 | RAP380 | RAP460 | RAP540 | RAP620 | RAP700 | HU80 | HU120 | HU160 | rpd3Δ_1 | rpd3Δ_2 | rpd3Δ_3 | AF100 | AF140 | AF180 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Mean Cell GFP Intensity (1e-4) | 6.3 | 4.6 | 7.0 | 6.2 | 6.8 | 5.3 | 5.3 | 5.6 | 4.1 | 4.7 | 4.4 | 4.8 | 7.4 | 6.4 | 6.0 | 6.5 | 7.4 | 8.3 | 9.6 | 9.2 | 9.4 |
Std Deviation (1e-4) | 1.1 | 0.7 | 1.6 | 1.5 | 1.8 | 1.2 | 1.1 | 1.6 | 1.1 | 1.2 | 0.9 | 1.9 | 9.3 | 3.3 | 1.5 | 1.8 | 1.9 | 2.4 | 15.0 | 11.4 | 10.7 |
Intensity Change (Log2) | – | – | – | -0.16 | -0.04 | -0.4 | -0.38 | -0.31 | -0.76 | -0.57 | -0.66 | -0.55 | 0.09 | -0.13 | -0.21 | -0.11 | 0.08 | 0.25 | 0.46 | 0.4 | 0.44 |
Localization | RAP60 | RAP140 | RAP220 | RAP300 | RAP380 | RAP460 | RAP540 | RAP620 | RAP700 | HU80 | HU120 | HU160 | rpd3Δ_1 | rpd3Δ_2 | rpd3Δ_3 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Actin | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – |
Bud | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – |
Bud Neck | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – |
Bud Site | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – |
Cell Periphery | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – |
Cyto | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – |
Endoplasmic Reticulum | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – |
Endosome | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – |
Golgi | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – |
Mitochondria | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – |
Nuclear Periphery | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – |
Nuc | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – |
Nucleolus | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – |
Peroxisomes | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – |
SpindlePole | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – |
Vac | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – |
Cortical Patches | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – |
Cytoplasm | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – |
Nucleus | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – |
Vacuole | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – |
R1 | R2 | R3 | ||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
G1 Pre-START | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | G1 Pre-START | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | G1 Pre-START | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | |
Concentration | 3.6423 | 4.032 | 3.7039 | 3.209 | 3.4313 | 3.6814 | 4.6277 | 4.8623 | 4.5201 | 5.0963 | 4.3064 | 4.8528 | 1.4533 | 1.8441 | 1.6926 | 1.6447 | 1.3075 | 1.6064 |
Actin | 0.0076 | 0 | 0.003 | 0 | 0.0004 | 0.0021 | 0.0472 | 0 | 0.0137 | 0 | 0.0001 | 0.0038 | 0.0009 | 0 | 0.0002 | 0.0034 | 0 | 0 |
Bud | 0.0002 | 0 | 0.0001 | 0 | 0 | 0 | 0.0007 | 0 | 0.0004 | 0 | 0 | 0.0001 | 0.0002 | 0 | 0.0001 | 0.0001 | 0 | 0 |
Bud Neck | 0.0043 | 0.0001 | 0.001 | 0 | 0.0004 | 0.0011 | 0.0014 | 0.0001 | 0.0012 | 0 | 0.0005 | 0.0012 | 0.0011 | 0 | 0.0002 | 0.0202 | 0.0003 | 0.0005 |
Bud Periphery | 0.0006 | 0 | 0.0003 | 0 | 0 | 0 | 0.0021 | 0 | 0.0008 | 0 | 0 | 0.0002 | 0.0005 | 0 | 0.0001 | 0.0001 | 0 | 0 |
Bud Site | 0.0031 | 0 | 0.0022 | 0 | 0.0001 | 0.0001 | 0.0022 | 0.0001 | 0.0027 | 0 | 0 | 0.0004 | 0.0006 | 0 | 0.0001 | 0.0014 | 0 | 0 |
Cell Periphery | 0.0004 | 0 | 0.0001 | 0 | 0 | 0 | 0.0006 | 0 | 0.0002 | 0 | 0 | 0.0001 | 0.0001 | 0 | 0 | 0.0001 | 0 | 0 |
Cytoplasm | 0.0014 | 0.0001 | 0.0007 | 0 | 0.0017 | 0.0001 | 0.0027 | 0 | 0.0012 | 0.0001 | 0.0004 | 0.0001 | 0.0021 | 0.0001 | 0.0004 | 0.0002 | 0.0003 | 0 |
Cytoplasmic Foci | 0.0144 | 0 | 0.0014 | 0 | 0.002 | 0.0005 | 0.0071 | 0 | 0.0029 | 0 | 0 | 0.002 | 0.0011 | 0 | 0 | 0.0019 | 0 | 0 |
Eisosomes | 0.0004 | 0 | 0 | 0 | 0 | 0 | 0.0017 | 0 | 0.0001 | 0 | 0 | 0 | 0 | 0 | 0 | 0.0001 | 0 | 0 |
Endoplasmic Reticulum | 0.0079 | 0 | 0.0002 | 0 | 0.0009 | 0.0001 | 0.0026 | 0 | 0.0015 | 0 | 0.0002 | 0.0001 | 0.0011 | 0 | 0.0004 | 0 | 0 | 0 |
Endosome | 0.0105 | 0 | 0.0009 | 0 | 0.0089 | 0.001 | 0.016 | 0 | 0.0075 | 0 | 0.0004 | 0.0044 | 0.0031 | 0 | 0.001 | 0.0003 | 0 | 0 |
Golgi | 0.0038 | 0 | 0.0011 | 0 | 0.0016 | 0.0008 | 0.0067 | 0 | 0.0029 | 0 | 0 | 0.007 | 0.0003 | 0 | 0 | 0.0006 | 0 | 0 |
Lipid Particles | 0.0193 | 0 | 0.0008 | 0 | 0.0261 | 0.0031 | 0.0118 | 0 | 0.0094 | 0 | 0 | 0.0032 | 0.0007 | 0 | 0 | 0.0005 | 0 | 0 |
Mitochondria | 0.002 | 0.0001 | 0.0003 | 0.0001 | 0.0033 | 0.0011 | 0.0123 | 0.0002 | 0.0083 | 0.0003 | 0.0003 | 0.0181 | 0.0014 | 0 | 0.0007 | 0.0003 | 0.0001 | 0 |
None | 0.0072 | 0 | 0.0009 | 0 | 0.0011 | 0.0001 | 0.0117 | 0 | 0.0003 | 0.0001 | 0.0001 | 0.0001 | 0.0008 | 0 | 0.0001 | 0.0001 | 0.0001 | 0 |
Nuclear Periphery | 0.006 | 0.0005 | 0.0018 | 0.0006 | 0.0296 | 0.0004 | 0.0153 | 0.0022 | 0.0047 | 0.0032 | 0.0081 | 0.0003 | 0.0057 | 0.0007 | 0.0052 | 0.0003 | 0.0017 | 0.0002 |
Nucleolus | 0.0086 | 0.0074 | 0.0114 | 0.0038 | 0.0149 | 0.0181 | 0.0123 | 0.0111 | 0.0042 | 0.0075 | 0.0214 | 0.02 | 0.0112 | 0.0045 | 0.0047 | 0.0034 | 0.0195 | 0.0198 |
Nucleus | 0.8602 | 0.9832 | 0.9572 | 0.9953 | 0.8972 | 0.9692 | 0.8226 | 0.986 | 0.929 | 0.9877 | 0.9664 | 0.9354 | 0.9607 | 0.9942 | 0.9857 | 0.9639 | 0.9726 | 0.9764 |
Peroxisomes | 0.0263 | 0 | 0.0006 | 0 | 0.003 | 0.0009 | 0.0099 | 0 | 0.0057 | 0 | 0 | 0.002 | 0.0001 | 0 | 0 | 0.0028 | 0 | 0 |
Punctate Nuclear | 0.0135 | 0.0086 | 0.0154 | 0.0001 | 0.0068 | 0.0011 | 0.0034 | 0.0002 | 0.0012 | 0.0007 | 0.0013 | 0.001 | 0.0062 | 0.0003 | 0.0003 | 0.0003 | 0.0052 | 0.0029 |
Vacuole | 0.0015 | 0 | 0.0005 | 0 | 0.001 | 0.0001 | 0.0069 | 0 | 0.0014 | 0 | 0.0005 | 0.0003 | 0.0017 | 0 | 0.0003 | 0 | 0 | 0 |
Vacuole Periphery | 0.0007 | 0 | 0.0001 | 0 | 0.001 | 0.0001 | 0.0029 | 0 | 0.0007 | 0.0001 | 0.0004 | 0.0002 | 0.0006 | 0 | 0.0003 | 0 | 0 | 0 |
R1 | R2 | |||||||||
---|---|---|---|---|---|---|---|---|---|---|
G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | |
Gene Expression | 3.2723 | 5.8504 | 13.0237 | 9.6427 | 11.0308 | 5.2327 | 4.1407 | 13.9736 | 9.5865 | 9.4639 |
Translational Efficiency | 6.9676 | 3.6763 | 1.3098 | 1.5341 | 1.6319 | 4.4217 | 5.5355 | 1.4157 | 2.0653 | 1.944 |
Dataset | Hit |
---|---|
Protein Concentration | ✘ |
Protein Localization | ✘ |
Gene Expression | ✘ |
Translational Efficiency | ✘ |
Temp | Actin Patch (Sac6-tdTomato) | Cortical Patch (Sla1-GFP) | Late Endosome (Snf7-GFP) | Vacuole (Vph1-GFP) |
---|---|---|---|---|
37℃ | ||||
RT |
Gene / Allele | Actin Patch (Sac6-tdTomato) | Cortical Patch (Sla1-GFP) | Late Endosome (Snf7-GFP) | Vacuole (Sac6-tdTomato) |
---|
Gene | Images |
---|
Gene | Images |
---|