Standard name | |
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Human Ortholog | |
Description | Subunit of the Nup84p subcomplex of the nuclear pore complex (NPC); contributes to nucleocytoplasmic transport and NPC biogenesis and is involved in establishment of a normal nucleocytoplasmic concentration gradient of the GTPase Gsp1p; also plays roles in several processes that may require localization of genes or chromosomes at the nuclear periphery, including double-strand break repair, transcription and chromatin silencing; homologous to human NUP85 aka NUP75 |
ensLOC | DeepLoc | |||||||||||||||||||||||
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Localization | WT1 | WT2 | WT3 | RAP60 | RAP140 | RAP220 | RAP300 | RAP380 | RAP460 | RAP540 | RAP620 | RAP700 | HU80 | HU120 | HU160 | rpd3Δ_1 | rpd3Δ_2 | rpd3Δ_3 | WT1 | WT2 | WT3 | AF100 | AF140 | AF180 |
Cortical Patches | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 1 | 1 | 1 | 3 | 2 | 4 |
Bud | 0 | 0 | 0 | 0 | 0 | 1 | 2 | 2 | 2 | 2 | 4 | 2 | 0 | 0 | 0 | 0 | 2 | 0 | 2 | 6 | 3 | 0 | 1 | 1 |
Bud Neck | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Bud Site | 0 | 0 | 0 | 0 | 0 | 1 | 4 | 7 | 9 | 5 | 2 | 2 | 0 | 0 | 1 | 1 | 0 | 0 | – | – | – | – | – | – |
Cell Periphery | 0 | 0 | 2 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 2 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Cytoplasm | 7 | 6 | 7 | 8 | 8 | 7 | 7 | 11 | 11 | 4 | 4 | 3 | 14 | 14 | 16 | 20 | 24 | 13 | 0 | 1 | 0 | 0 | 1 | 0 |
Endoplasmic Reticulum | 0 | 0 | 1 | 1 | 0 | 2 | 0 | 1 | 0 | 0 | 1 | 0 | 1 | 1 | 1 | 2 | 12 | 3 | 0 | 0 | 0 | 0 | 0 | 1 |
Endosome | 3 | 1 | 11 | 3 | 16 | 10 | 12 | 11 | 10 | 5 | 5 | 7 | 6 | 6 | 9 | 39 | 23 | 15 | 3 | 9 | 2 | 5 | 15 | 18 |
Golgi | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 3 | 0 | 2 | 1 | 1 | 5 | 5 |
Mitochondria | 24 | 49 | 55 | 21 | 45 | 115 | 125 | 224 | 224 | 167 | 134 | 192 | 0 | 0 | 3 | 37 | 29 | 18 | 6 | 12 | 11 | 14 | 47 | 56 |
Nucleus | 10 | 19 | 5 | 3 | 6 | 3 | 7 | 19 | 19 | 15 | 12 | 12 | 8 | 8 | 7 | 19 | 27 | 10 | 3 | 5 | 1 | 0 | 0 | 0 |
Nuclear Periphery | 221 | 244 | 180 | 77 | 144 | 155 | 204 | 201 | 215 | 199 | 143 | 205 | 112 | 109 | 125 | 157 | 145 | 111 | 289 | 278 | 252 | 100 | 238 | 152 |
Nucleolus | 36 | 27 | 53 | 24 | 42 | 87 | 94 | 144 | 144 | 121 | 101 | 118 | 13 | 13 | 13 | 54 | 42 | 36 | 4 | 15 | 2 | 2 | 3 | 2 |
Peroxisomes | 0 | 0 | 0 | 0 | 2 | 0 | 3 | 5 | 5 | 2 | 1 | 0 | 0 | 0 | 0 | 1 | 1 | 2 | 0 | 0 | 1 | 0 | 5 | 9 |
SpindlePole | 1 | 0 | 2 | 0 | 3 | 3 | 7 | 8 | 8 | 4 | 1 | 2 | 2 | 2 | 5 | 12 | 13 | 7 | 1 | 2 | 3 | 3 | 4 | 3 |
Vac/Vac Membrane | 103 | 87 | 51 | 6 | 38 | 20 | 24 | 24 | 27 | 16 | 8 | 12 | 33 | 35 | 45 | 81 | 77 | 61 | 10 | 21 | 4 | 4 | 10 | 9 |
Unique Cell Count | 298 | 323 | 264 | 104 | 225 | 285 | 346 | 477 | 482 | 342 | 270 | 360 | 147 | 143 | 173 | 294 | 284 | 199 | 328 | 360 | 292 | 142 | 341 | 269 |
Labelled Cell Count | 405 | 433 | 368 | 143 | 304 | 404 | 489 | 657 | 674 | 540 | 416 | 555 | 189 | 188 | 227 | 424 | 398 | 279 | 328 | 360 | 292 | 142 | 341 | 269 |
Screen | WT1 | WT2 | WT3 | RAP60 | RAP140 | RAP220 | RAP300 | RAP380 | RAP460 | RAP540 | RAP620 | RAP700 | HU80 | HU120 | HU160 | rpd3Δ_1 | rpd3Δ_2 | rpd3Δ_3 | AF100 | AF140 | AF180 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Mean Cell GFP Intensity (1e-4) | 11.8 | 11.5 | 11.3 | 10.0 | 9.2 | 7.9 | 7.6 | 7.7 | 7.7 | 6.8 | 7.1 | 7.0 | 10.8 | 10.8 | 10.9 | 7.1 | 7.3 | 9.7 | 11.7 | 12.4 | 12.8 |
Std Deviation (1e-4) | 2.7 | 2.9 | 3.3 | 2.6 | 2.2 | 2.5 | 2.2 | 2.6 | 2.6 | 1.9 | 2.0 | 2.0 | 3.0 | 3.0 | 3.5 | 1.3 | 1.9 | 2.4 | 2.6 | 2.5 | 3.1 |
Intensity Change (Log2) | – | – | – | -0.17 | -0.3 | -0.52 | -0.57 | -0.55 | -0.55 | -0.72 | -0.67 | -0.68 | -0.07 | -0.07 | -0.06 | -0.68 | -0.63 | -0.22 | 0.04 | 0.14 | 0.18 |
Localization | RAP60 | RAP140 | RAP220 | RAP300 | RAP380 | RAP460 | RAP540 | RAP620 | RAP700 | HU80 | HU120 | HU160 | rpd3Δ_1 | rpd3Δ_2 | rpd3Δ_3 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Cortical Patches | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Bud | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Bud Neck | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Bud Site | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Cell Periphery | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Cytoplasm | 0 | 0.6 | -0.1 | -0.5 | -0.3 | -0.3 | 0 | -1.0 | 0 | 3.0 | 3.1 | 3.0 | 2.3 | 2.9 | 2.0 |
Endoplasmic Reticulum | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 3.0 | 0 |
Endosome | 0 | 1.4 | -0.4 | -0.4 | -1.4 | -1.7 | -2.1 | -1.6 | -1.6 | 0 | 0 | 0.5 | 3.8 | 1.9 | 1.6 |
Golgi | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Mitochondria | -0.1 | -0.2 | 4.9 | 4.1 | 7.0 | 6.9 | 7.1 | 7.0 | 8.2 | -5.9 | -5.9 | -5.8 | -2.6 | -3.4 | -3.4 |
Nucleus | 0 | 0.6 | 0 | 0.1 | 1.5 | 1.5 | 1.7 | 1.7 | 1.1 | 0 | 0 | 0 | 2.7 | 3.8 | 1.9 |
Nuclear Periphery | 1.1 | -1.0 | -3.3 | -2.3 | -6.8 | -6.2 | -2.5 | -3.6 | -2.9 | 1.7 | 1.7 | 0.9 | -3.6 | -4.1 | -2.7 |
Nucleolus | 0.6 | -0.4 | 2.8 | 2.0 | 3.0 | 2.9 | 4.1 | 4.4 | 3.5 | -3.0 | -2.9 | -3.6 | -0.5 | -1.6 | -0.5 |
Peroxisomes | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
SpindlePole | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 2.5 | 2.7 | 0 |
Vacuole | -3.2 | -0.7 | -4.3 | -4.6 | -6.2 | -5.9 | -5.7 | -6.0 | -6.5 | 0.8 | 1.2 | 1.7 | 2.3 | 2.2 | 2.8 |
R1 | R2 | R3 | ||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
G1 Pre-START | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | G1 Pre-START | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | G1 Pre-START | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | |
Concentration | 6.4948 | 7.1391 | 6.2739 | 6.3773 | 5.6201 | 6.1661 | 8.2773 | 8.6007 | 7.5013 | 6.3457 | 6.6794 | 7.4757 | 10.2296 | 8.9191 | 8.9538 | 8.8107 | 9.407 | 8.6231 |
Actin | 0.0026 | 0.0003 | 0.0007 | 0.0015 | 0.0013 | 0.0001 | 0.0036 | 0.0004 | 0.0008 | 0.001 | 0.0073 | 0.0005 | 0.0001 | 0.0002 | 0.0003 | 0.0008 | 0.0002 | 0.0001 |
Bud | 0.0001 | 0 | 0 | 0.0001 | 0 | 0 | 0.0002 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Bud Neck | 0.0001 | 0 | 0 | 0.0001 | 0.0001 | 0 | 0.0002 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Bud Periphery | 0.0004 | 0.0001 | 0.0001 | 0.0003 | 0.0002 | 0 | 0.0007 | 0.0002 | 0.0002 | 0.0001 | 0.0001 | 0.0001 | 0.0001 | 0.0001 | 0.0001 | 0.0002 | 0.0001 | 0 |
Bud Site | 0.0001 | 0 | 0.0001 | 0.0002 | 0 | 0 | 0.0013 | 0.0001 | 0 | 0 | 0.0001 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Cell Periphery | 0.0001 | 0 | 0 | 0.0001 | 0.0001 | 0 | 0.0003 | 0.0001 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Cytoplasm | 0.0011 | 0 | 0.0003 | 0.0005 | 0.0001 | 0 | 0.0011 | 0 | 0.0001 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Cytoplasmic Foci | 0.0038 | 0.0011 | 0.0005 | 0.0013 | 0.0002 | 0.0001 | 0.0014 | 0.0033 | 0.0002 | 0.0009 | 0.0025 | 0.0008 | 0.0001 | 0.0001 | 0.0001 | 0.0001 | 0 | 0 |
Eisosomes | 0.0001 | 0 | 0 | 0.0001 | 0.0001 | 0 | 0.0003 | 0.0001 | 0 | 0 | 0.0001 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Endoplasmic Reticulum | 0.0019 | 0.0014 | 0.001 | 0.0019 | 0.0016 | 0.0003 | 0.0021 | 0.001 | 0.0016 | 0.0013 | 0.0007 | 0.0003 | 0.0003 | 0.0006 | 0.0007 | 0.0009 | 0.0004 | 0.0002 |
Endosome | 0.0055 | 0.0006 | 0.0009 | 0.0032 | 0.0022 | 0.0009 | 0.0037 | 0.0015 | 0.0014 | 0.0005 | 0.0014 | 0.0003 | 0.0002 | 0.0003 | 0.0004 | 0.0005 | 0.0004 | 0.0002 |
Golgi | 0.0013 | 0.001 | 0.0004 | 0.0009 | 0.0013 | 0.0003 | 0.0016 | 0.0057 | 0.0007 | 0.0005 | 0.0043 | 0.0003 | 0.0001 | 0.0002 | 0.0002 | 0.0004 | 0.0004 | 0.0002 |
Lipid Particles | 0.0194 | 0.0453 | 0.0093 | 0.0058 | 0.0177 | 0.0067 | 0.0032 | 0.0262 | 0.0085 | 0.0042 | 0.0122 | 0.0037 | 0.0024 | 0.0032 | 0.0032 | 0.0021 | 0.0047 | 0.002 |
Mitochondria | 0.0093 | 0.0018 | 0.0019 | 0.0021 | 0.0071 | 0.0011 | 0.0147 | 0.006 | 0.0025 | 0.0035 | 0.0083 | 0.0033 | 0.0011 | 0.0006 | 0.0008 | 0.0012 | 0.0034 | 0.0008 |
None | 0.0038 | 0.0002 | 0.0004 | 0.001 | 0.0006 | 0.0001 | 0.0015 | 0.0003 | 0.0005 | 0.0002 | 0.0001 | 0.0001 | 0.0002 | 0.0001 | 0.0002 | 0.0002 | 0.0002 | 0.0001 |
Nuclear Periphery | 0.9022 | 0.8996 | 0.9236 | 0.908 | 0.9024 | 0.9653 | 0.9039 | 0.8861 | 0.9258 | 0.8976 | 0.9001 | 0.9668 | 0.963 | 0.9497 | 0.9513 | 0.9575 | 0.9588 | 0.9812 |
Nucleolus | 0.001 | 0.001 | 0.0036 | 0.0041 | 0.0028 | 0.0012 | 0.0008 | 0.0061 | 0.0017 | 0.0004 | 0.0003 | 0.0002 | 0.0003 | 0.0028 | 0.0006 | 0.0005 | 0.0006 | 0.0003 |
Nucleus | 0.0042 | 0.0128 | 0.0088 | 0.0276 | 0.0233 | 0.0028 | 0.0037 | 0.0024 | 0.0085 | 0.0039 | 0.0014 | 0.001 | 0.0017 | 0.0057 | 0.0038 | 0.0023 | 0.0016 | 0.0013 |
Peroxisomes | 0.0011 | 0.0005 | 0.0001 | 0.0002 | 0.0002 | 0 | 0.0012 | 0.0009 | 0.0001 | 0.0521 | 0.0347 | 0.007 | 0 | 0 | 0.0001 | 0.0001 | 0 | 0 |
Punctate Nuclear | 0.0048 | 0.0018 | 0.0125 | 0.0095 | 0.0018 | 0.0023 | 0.0177 | 0.0021 | 0.0014 | 0.0007 | 0.0007 | 0.0006 | 0.0005 | 0.0031 | 0.002 | 0.001 | 0.001 | 0.0008 |
Vacuole | 0.0011 | 0.0005 | 0.0006 | 0.0011 | 0.0009 | 0.0003 | 0.001 | 0.0009 | 0.0007 | 0.0003 | 0.0003 | 0.0001 | 0.0003 | 0.0004 | 0.0003 | 0.0003 | 0.0003 | 0.0001 |
Vacuole Periphery | 0.0359 | 0.0321 | 0.035 | 0.0303 | 0.036 | 0.0184 | 0.0358 | 0.0566 | 0.0452 | 0.0327 | 0.0252 | 0.0147 | 0.0295 | 0.033 | 0.0358 | 0.0318 | 0.0278 | 0.0126 |
R1 | R2 | |||||||||
---|---|---|---|---|---|---|---|---|---|---|
G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | |
Gene Expression | 21.9694 | 21.6252 | 26.8539 | 32.3119 | 26.5639 | 24.1776 | 28.3356 | 30.8705 | 30.1059 | 31.1292 |
Translational Efficiency | 1.6071 | 1.4054 | 1.0882 | 0.9036 | 1.0276 | 1.1344 | 1.0607 | 0.8299 | 0.8547 | 0.8968 |
Dataset | Hit |
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Protein Concentration | ✘ |
Protein Localization | ✘ |
Gene Expression | ✔ |
Translational Efficiency | ✘ |
Temp | Actin Patch (Sac6-tdTomato) | Cortical Patch (Sla1-GFP) | Late Endosome (Snf7-GFP) | Vacuole (Vph1-GFP) |
---|---|---|---|---|
37℃ | ||||
RT |
Gene / Allele | Actin Patch (Sac6-tdTomato) | Cortical Patch (Sla1-GFP) | Late Endosome (Snf7-GFP) | Vacuole (Sac6-tdTomato) |
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Gene | Images |
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Gene | Images |
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