Standard name
Human Ortholog
Description Cytochrome c, isoform 1; also known as iso-1-cytochrome c; electron carrier of mitochondrial intermembrane space that transfers electrons from ubiquinone-cytochrome c oxidoreductase to cytochrome c oxidase during cellular respiration; CYC1 has a paralog, CYC7, that arose from the whole genome duplication; human homolog CYC1 can complement yeast null mutant; mutations in human CYC1 cause insulin-responsive hyperglycemia

Micrographs

ensLOC DeepLoc
Localization WT1 WT2 WT3 RAP60 RAP140 RAP220 RAP300 RAP380 RAP460 RAP540 RAP620 RAP700 HU80 HU120 HU160 rpd3Δ_1 rpd3Δ_2 rpd3Δ_3 WT1 WT2 WT3 AF100 AF140 AF180
Cortical Patches 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0.07 0.08 0.05 0.07 0.07
Bud 0 0 0 0 0 0 0 0 0 0.07 0 0 0 0 0 0 0 0.05 0.05 0.06
Bud Neck 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Bud Site 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Cell Periphery 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Cytoplasm 0.81 0.54 0.28 0.28 0.26 0.2 0.13 0.11 0.07 0.1 0.07 0.68 0.75 0.7 0.5 0.26 0.11 0.12 0.14 0.13
Endoplasmic Reticulum 0.07 0 0 0 0 0 0 0 0 0 0 0.07 0.07 0 0 0.05 0.11 0 0.05 0
Endosome 0 0.1 0.08 0.07 0.27 0.07 0.07 0 0 0 0 0 0.08 0.1 0.14 0.16 0.17 0.17 0.2 0.13
Golgi 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0.06 0.09 0.11 0.1 0.05
Mitochondria 0.05 0.05 0.64 0.63 0.38 0.73 0.77 0.84 0.9 0.88 0.93 0 0 0 0.09 0.18 0.29 0.25 0.22 0.29
Nucleus 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Nuclear Periphery 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Nucleolus 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Peroxisomes 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
SpindlePole 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Vac/Vac Membrane 0.05 0.3 0.1 0.08 0.27 0.16 0.21 0.15 0.11 0.08 0.08 0.13 0.09 0.18 0.07 0.11 0 0.12 0.07 0.12
ensLOC DeepLoc
Localization WT1 WT2 WT3 RAP60 RAP140 RAP220 RAP300 RAP380 RAP460 RAP540 RAP620 RAP700 HU80 HU120 HU160 rpd3Δ_1 rpd3Δ_2 rpd3Δ_3 WT1 WT2 WT3 AF100 AF140 AF180
Cortical Patches 9 5 6 7 3 0 0 1 3 1 0 6 3 1 7 21 20 6 16 14
Bud 2 2 7 7 3 6 8 11 14 22 12 1 0 3 6 13 3 6 12 13
Bud Neck 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 5 2 1 2 7
Bud Site 0 0 0 0 0 0 1 1 4 3 8 0 0 0
Cell Periphery 2 10 8 8 3 0 2 5 10 3 4 6 1 4 0 1 4 1 1 2
Cytoplasm 178 135 67 67 71 45 42 38 37 31 33 113 141 149 129 83 27 15 31 27
Endoplasmic Reticulum 16 10 6 9 9 3 1 4 5 1 7 12 13 7 6 15 28 4 11 7
Endosome 3 25 18 18 75 15 22 10 11 4 4 7 16 21 37 50 42 21 45 29
Golgi 0 7 5 3 7 1 0 0 0 0 0 1 2 1 3 19 21 13 22 11
Mitochondria 10 13 152 152 106 165 255 293 503 272 417 6 4 8 24 57 71 32 50 64
Nucleus 1 1 0 0 0 3 5 2 11 8 5 0 1 0 5 3 0 0 1 2
Nuclear Periphery 0 2 0 0 1 0 4 7 10 3 11 0 2 0 3 3 1 1 1 2
Nucleolus 0 1 1 1 1 1 6 9 8 5 9 0 1 0 0 0 0 0 0 0
Peroxisomes 0 0 2 2 3 1 1 1 1 0 1 0 0 0 0 0 2 1 0 0
SpindlePole 0 1 1 1 4 1 5 4 5 9 7 0 0 0 4 3 8 2 7 5
Vac/Vac Membrane 12 76 24 20 74 37 68 53 64 25 38 22 17 38 17 35 5 16 15 25
Unique Cell Count 219 252 238 240 277 227 331 347 560 308 450 165 189 213 258 325 250 130 226 221
Labelled Cell Count 233 288 297 295 360 278 420 439 686 387 556 174 201 232 258 325 250 130 226 221


Cytoplasm, Nucleus

(Huh et al. Nature 2003 425:686)
Screen WT1 WT2 WT3 RAP60 RAP140 RAP220 RAP300 RAP380 RAP460 RAP540 RAP620 RAP700 HU80 HU120 HU160 rpd3Δ_1 rpd3Δ_2 rpd3Δ_3 AF100 AF140 AF180
Mean Cell GFP Intensity (1e-4) 7.9 9.7 7.3 7.3 7.4 5.4 5.3 4.6 4.8 5.0 4.8 8.8 8.8 7.8 9.0 8.5 8.1
Std Deviation (1e-4) 1.9 2.1 2.5 2.5 2.5 2.0 2.1 1.5 1.5 1.6 1.4 2.2 2.4 2.0 2.6 2.3 1.9
Intensity Change (Log2) -0.0 0.03 -0.44 -0.45 -0.66 -0.59 -0.53 -0.59 0.27 0.28 0.1 0.31 0.23 0.16


Localization RAP60 RAP140 RAP220 RAP300 RAP380 RAP460 RAP540 RAP620 RAP700 HU80 HU120 HU160 rpd3Δ_1 rpd3Δ_2 rpd3Δ_3
Cortical Patches 0.3 0 0 0 0 0 0 0 0 0 0
Bud 0 0 -0.2 -0.4 0 0 2.2 0 0 0 0
Bud Neck 0 0 0 0 0 0 0 0 0 0 0
Bud Site 0 0 0 0 0 0 0 0 0 0 0
Cell Periphery 0 -1.8 0 0 0 0 0 0 0.1 0 -1.0
Cytoplasm -0.1 -0.6 -2.1 -4.6 -5.3 -8.3 -5.5 -7.4 8.0 9.5 8.9
Endoplasmic Reticulum 0.8 0.5 0 0 0 0 0 0 2.3 2.2 0.5
Endosome 0 5.7 -0.4 -0.4 0 0 -3.7 0 -1.4 0.3 0.9
Golgi 0 0.3 0 0 0 0 0 0 0 0 0
Mitochondria -0.1 -5.8 2.0 3.4 0 0 6.8 0 -12.2 -13.2 -13.3
Nucleus 0 0 0 0 0 0 0 0 0 0 0
Nuclear Periphery 0 0 0 0 0 0 0 0 0 0 0
Nucleolus 0 0 0 0 0 0 0 0 0 0 0
Peroxisomes 0 0 0 0 0 0 0 0 0 0 0
SpindlePole 0 0 0 0 0 0 0 0 0 0 0
Vacuole -0.7 4.8 2.0 3.3 1.8 0.6 -0.8 -0.7 1.0 -0.4 2.4

Images

Circle plot not available

Protein Concentration and Protein Localization Data

R1 R2 R3
G1 Pre-START G1 Post-START S/G2 Metaphase Anaphase Telophase G1 Pre-START G1 Post-START S/G2 Metaphase Anaphase Telophase G1 Pre-START G1 Post-START S/G2 Metaphase Anaphase Telophase
Concentration 5.572 6.5602 5.8206 5.449 4.4412 5.9994 4.7345 6.505 7.1294 6.6103 4.9566 7.1751 6.2097 8.9913 8.2635 8.3549 6.0155 7.8441
Actin 0.0697 0.0429 0.042 0.0098 0.0773 0.0407 0.0561 0.0582 0.0621 0.0389 0.0111 0.0216 0.058 0.0748 0.0629 0.0227 0.1221 0.0392
Bud 0.0024 0.0079 0.0073 0.0104 0.0112 0.0036 0.0051 0.0091 0.0077 0.0182 0.0016 0.0029 0.0034 0.0101 0.0049 0.0066 0.0103 0.0071
Bud Neck 0.0034 0.0031 0.007 0.0024 0.0021 0.0117 0.002 0.0018 0.0027 0.0023 0.0015 0.007 0.024 0.0021 0.0058 0.0022 0.0028 0.0091
Bud Periphery 0.0019 0.0051 0.0106 0.0151 0.0085 0.0032 0.0133 0.0058 0.0067 0.0157 0.0005 0.0023 0.0019 0.0061 0.0027 0.0043 0.0187 0.0057
Bud Site 0.0099 0.0425 0.0108 0.0048 0.0044 0.0041 0.0074 0.0261 0.0144 0.0108 0.0018 0.0025 0.0237 0.049 0.0115 0.0024 0.0182 0.019
Cell Periphery 0.0006 0.0011 0.0007 0.0009 0.0007 0.0006 0.001 0.0009 0.0009 0.0006 0.0001 0.0004 0.0004 0.0009 0.0005 0.0003 0.0006 0.0009
Cytoplasm 0.2508 0.3905 0.3268 0.2479 0.3289 0.319 0.2589 0.3899 0.387 0.3151 0.4677 0.4024 0.3263 0.3888 0.5054 0.482 0.1223 0.3693
Cytoplasmic Foci 0.1244 0.1159 0.1093 0.1802 0.0669 0.131 0.1001 0.1287 0.1272 0.0632 0.144 0.1208 0.1335 0.1176 0.0996 0.1385 0.1524 0.0789
Eisosomes 0.0005 0.0002 0.0002 0.0002 0.0004 0.0001 0.0003 0.0002 0.0005 0.0002 0.0001 0.0001 0.0002 0.0002 0.0004 0.0001 0.0006 0.0003
Endoplasmic Reticulum 0.0249 0.0128 0.0256 0.0083 0.021 0.0165 0.03 0.0124 0.0155 0.0059 0.0029 0.0315 0.0266 0.0148 0.0185 0.0053 0.0084 0.0242
Endosome 0.2495 0.1107 0.1732 0.1673 0.1311 0.2108 0.2442 0.1342 0.1168 0.1311 0.1223 0.1776 0.1731 0.1357 0.1013 0.0842 0.1502 0.1513
Golgi 0.0954 0.1003 0.1067 0.0826 0.1263 0.1088 0.0745 0.1351 0.108 0.1247 0.1585 0.102 0.0762 0.0846 0.0959 0.0897 0.1136 0.086
Lipid Particles 0.0142 0.0034 0.0077 0.0028 0.0057 0.0073 0.0158 0.0012 0.0031 0.0232 0.0082 0.0023 0.0196 0.0027 0.0034 0.0074 0.0206 0.0017
Mitochondria 0.0607 0.1047 0.1023 0.219 0.1303 0.0971 0.0782 0.0621 0.1103 0.1986 0.0234 0.0734 0.0302 0.0623 0.0408 0.0723 0.0906 0.1348
None 0.0027 0.0078 0.0041 0.0033 0.0253 0.0032 0.0071 0.0017 0.002 0.0011 0.0016 0.0046 0.0364 0.0024 0.015 0.0016 0.0159 0.0043
Nuclear Periphery 0.0243 0.0033 0.0122 0.0054 0.0125 0.007 0.018 0.0023 0.003 0.0097 0.0013 0.0098 0.0186 0.0045 0.0037 0.0019 0.0116 0.0287
Nucleolus 0.0004 0.0016 0.0003 0.0005 0.0005 0.0002 0.0006 0.0001 0.0003 0.0005 0.0001 0.0007 0.0005 0.0003 0.0002 0.0001 0.0011 0.0003
Nucleus 0.0188 0.0049 0.0082 0.006 0.003 0.0067 0.0212 0.0037 0.0076 0.0046 0.0044 0.0096 0.0057 0.0128 0.0037 0.0334 0.0037 0.0175
Peroxisomes 0.0254 0.0191 0.026 0.0213 0.0121 0.0121 0.0214 0.0172 0.0117 0.0191 0.0388 0.0124 0.0153 0.0188 0.014 0.0343 0.1022 0.0077
Punctate Nuclear 0.0024 0.0013 0.0023 0.0021 0.01 0.0033 0.0034 0.0007 0.0035 0.0004 0.0021 0.0016 0.0135 0.0014 0.0014 0.001 0.0248 0.0037
Vacuole 0.0114 0.0183 0.0106 0.0062 0.0124 0.0085 0.0297 0.0058 0.0064 0.0085 0.0056 0.0097 0.0095 0.0079 0.0066 0.0074 0.005 0.0061
Vacuole Periphery 0.0063 0.0027 0.0061 0.0037 0.0094 0.0043 0.0117 0.0026 0.0025 0.0078 0.0024 0.0049 0.0036 0.0025 0.002 0.0022 0.0041 0.0043

Sequencing Data

R1 R2
G1 Post-START S/G2 Metaphase Anaphase Telophase G1 Post-START S/G2 Metaphase Anaphase Telophase
Gene Expression 30.0928 50.8133 24.3978 36.7987 65.0278 26.7344 25.6886 19.3779 24.4892 35.553
Translational Efficiency 3.4221 1.8929 3.5331 3.0988 3.7195 3.0959 2.6325 4.4127 2.8324 3.0744

Hit Data

Dataset Hit
Protein Concentration
Protein Localization
Gene Expression
Translational Efficiency
Standard name
Human Ortholog
Description Cytochrome c, isoform 1; also known as iso-1-cytochrome c; electron carrier of mitochondrial intermembrane space that transfers electrons from ubiquinone-cytochrome c oxidoreductase to cytochrome c oxidase during cellular respiration; CYC1 has a paralog, CYC7, that arose from the whole genome duplication; human homolog CYC1 can complement yeast null mutant; mutations in human CYC1 cause insulin-responsive hyperglycemia
Localization
Cell Percentages mitochondrion (46%)
Cell Cycle Regulation No
Subcompartmental Group mito-1

Cyc1

Cyc1


Nearest neighbours ( genes)

correlation threshold

0.6

1.0

0.80


Biological Process (Gene Ontology)

Molecular Function (Gene Ontology)

Cellular Component (Gene Ontology)


Endocytosis
Temp Actin Patch (Sac6-tdTomato) Cortical Patch (Sla1-GFP) Late Endosome (Snf7-GFP) Vacuole (Vph1-GFP)
37℃
RT
Cell Cycle Omics

CYCLoPs (Cyc1-GFP)
Gene / Allele Actin Patch (Sac6-tdTomato) Cortical Patch (Sla1-GFP) Late Endosome (Snf7-GFP) Vacuole (Sac6-tdTomato)
Gene Images
Gene Images
Images are not yet available
Images are not yet available