Standard name | |
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Human Ortholog | |
Description | Peroxisomal matrix protein with naturally active promoter; well-conserved in fungi; localized to peroxisomes under physiological growth conditions; levels of some amino acids are altered upon both knockout and overexpression, suggesting potential involvement of Pxp2p in amino acid metabolism or related cellular metabolic processes (needs further study); GFP-fusion protein displays inherent dual localization with large proportion localizing to cytosol |
ensLOC | DeepLoc | |||||||||||||||||||||||
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Localization | WT1 | WT2 | WT3 | RAP60 | RAP140 | RAP220 | RAP300 | RAP380 | RAP460 | RAP540 | RAP620 | RAP700 | HU80 | HU120 | HU160 | rpd3Δ_1 | rpd3Δ_2 | rpd3Δ_3 | WT1 | WT2 | WT3 | AF100 | AF140 | AF180 |
Cortical Patches | 3 | 1 | 21 | 11 | 4 | 4 | 1 | 1 | 0 | 0 | 2 | 1 | 6 | 7 | 2 | 3 | 10 | 16 | 7 | 8 | 15 | 3 | 13 | 15 |
Bud | 9 | 6 | 39 | 25 | 16 | 22 | 31 | 24 | 43 | 37 | 33 | 44 | 3 | 0 | 3 | 18 | 13 | 10 | 2 | 0 | 5 | 0 | 2 | 3 |
Bud Neck | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 2 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 2 | 0 |
Bud Site | 4 | 2 | 8 | 2 | 1 | 3 | 5 | 2 | 14 | 7 | 8 | 13 | 0 | 0 | 0 | 4 | 1 | 5 | – | – | – | – | – | – |
Cell Periphery | 4 | 3 | 7 | 13 | 8 | 5 | 5 | 4 | 5 | 12 | 10 | 15 | 3 | 3 | 2 | 5 | 6 | 7 | 0 | 0 | 0 | 0 | 1 | 0 |
Cytoplasm | 2 | 11 | 18 | 16 | 24 | 19 | 20 | 35 | 25 | 18 | 11 | 12 | 7 | 11 | 32 | 29 | 16 | 30 | 0 | 4 | 2 | 6 | 15 | 21 |
Endoplasmic Reticulum | 5 | 3 | 1 | 4 | 3 | 2 | 3 | 0 | 4 | 3 | 3 | 5 | 3 | 5 | 12 | 7 | 9 | 4 | 0 | 0 | 1 | 0 | 0 | 3 |
Endosome | 36 | 3 | 67 | 49 | 93 | 79 | 109 | 80 | 6 | 18 | 18 | 23 | 12 | 33 | 35 | 46 | 24 | 31 | 43 | 18 | 69 | 20 | 28 | 32 |
Golgi | 10 | 3 | 33 | 30 | 22 | 4 | 3 | 4 | 1 | 0 | 3 | 0 | 26 | 25 | 20 | 8 | 39 | 42 | 17 | 10 | 28 | 14 | 19 | 25 |
Mitochondria | 134 | 108 | 184 | 310 | 282 | 474 | 543 | 513 | 876 | 770 | 730 | 875 | 100 | 78 | 103 | 17 | 9 | 15 | 76 | 69 | 234 | 61 | 118 | 132 |
Nucleus | 1 | 1 | 0 | 1 | 2 | 14 | 15 | 16 | 17 | 17 | 16 | 15 | 2 | 1 | 1 | 1 | 1 | 2 | 0 | 1 | 0 | 1 | 2 | 1 |
Nuclear Periphery | 1 | 0 | 0 | 2 | 3 | 11 | 13 | 13 | 19 | 28 | 12 | 20 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 1 | 1 | 2 |
Nucleolus | 3 | 0 | 2 | 4 | 5 | 13 | 14 | 26 | 21 | 16 | 13 | 15 | 2 | 0 | 1 | 3 | 0 | 9 | 0 | 0 | 0 | 0 | 0 | 2 |
Peroxisomes | 24 | 7 | 150 | 76 | 57 | 31 | 42 | 37 | 16 | 25 | 7 | 20 | 10 | 19 | 26 | 59 | 24 | 17 | 49 | 19 | 164 | 22 | 48 | 41 |
SpindlePole | 15 | 1 | 116 | 25 | 46 | 44 | 81 | 73 | 47 | 70 | 41 | 67 | 12 | 20 | 15 | 25 | 22 | 31 | 7 | 1 | 13 | 3 | 10 | 5 |
Vac/Vac Membrane | 23 | 13 | 29 | 16 | 67 | 73 | 97 | 80 | 46 | 46 | 41 | 32 | 8 | 15 | 18 | 26 | 20 | 28 | 4 | 6 | 2 | 4 | 2 | 4 |
Unique Cell Count | 193 | 126 | 454 | 423 | 470 | 625 | 740 | 718 | 941 | 872 | 784 | 970 | 142 | 158 | 217 | 169 | 142 | 175 | 215 | 146 | 551 | 144 | 272 | 297 |
Labelled Cell Count | 274 | 162 | 675 | 584 | 634 | 798 | 982 | 908 | 1140 | 1069 | 948 | 1158 | 195 | 217 | 270 | 251 | 194 | 247 | 215 | 146 | 551 | 144 | 272 | 297 |
Screen | WT1 | WT2 | WT3 | RAP60 | RAP140 | RAP220 | RAP300 | RAP380 | RAP460 | RAP540 | RAP620 | RAP700 | HU80 | HU120 | HU160 | rpd3Δ_1 | rpd3Δ_2 | rpd3Δ_3 | AF100 | AF140 | AF180 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Mean Cell GFP Intensity (1e-4) | 6.4 | 5.1 | 6.8 | 6.6 | 6.9 | 5.8 | 5.5 | 5.7 | 4.3 | 4.8 | 4.7 | 4.7 | 6.5 | 6.5 | 6.1 | 6.7 | 8.5 | 8.5 | 6.9 | 7.4 | 7.4 |
Std Deviation (1e-4) | 0.8 | 1.0 | 1.3 | 1.5 | 1.6 | 1.3 | 1.3 | 1.3 | 1.0 | 1.1 | 0.9 | 0.9 | 1.4 | 1.4 | 1.6 | 1.5 | 1.7 | 1.5 | 1.7 | 2.0 | 1.9 |
Intensity Change (Log2) | – | – | – | -0.05 | 0.01 | -0.25 | -0.32 | -0.27 | -0.66 | -0.5 | -0.53 | -0.53 | -0.06 | -0.08 | -0.15 | -0.03 | 0.31 | 0.32 | 0.01 | 0.12 | 0.12 |
Localization | RAP60 | RAP140 | RAP220 | RAP300 | RAP380 | RAP460 | RAP540 | RAP620 | RAP700 | HU80 | HU120 | HU160 | rpd3Δ_1 | rpd3Δ_2 | rpd3Δ_3 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Cortical Patches | -1.6 | -3.5 | -4.3 | -5.6 | -5.5 | 0 | 0 | 0 | 0 | -0.2 | -0.1 | -2.5 | -1.6 | 1.1 | 2.2 |
Bud | -1.5 | -3.3 | -3.6 | -3.1 | -3.9 | 0 | 0 | 0 | 0 | -2.6 | -3.8 | -3.6 | 0.8 | 0.2 | -1.2 |
Bud Neck | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Bud Site | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Cell Periphery | 1.5 | 0.2 | -1.1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Cytoplasm | -0.1 | 0.8 | -0.8 | -1.2 | 0.7 | -1.3 | -2.0 | -2.9 | -3.3 | 0.5 | 1.5 | 5.0 | 5.5 | 3.3 | 5.6 |
Endoplasmic Reticulum | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Endosome | -1.4 | 2.0 | -1.0 | 0 | -1.8 | 0 | 0 | 0 | 0 | -1.9 | 1.8 | 0.5 | 3.6 | 0.6 | 0.9 |
Golgi | -0.1 | -1.7 | -5.9 | -6.7 | -6.4 | 0 | 0 | 0 | 0 | 3.8 | 3.2 | 0.9 | -1.1 | 6.4 | 5.8 |
Mitochondria | 9.8 | 5.9 | 11.7 | 11.3 | 10.5 | 0 | 0 | 0 | 0 | 6.2 | 1.9 | 1.7 | -7.2 | -7.6 | -7.7 |
Nucleus | 0 | 0 | 3.2 | 3.1 | 3.2 | 2.9 | 3.0 | 3.1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Nuclear Periphery | 0 | 0 | 0 | 0 | 2.9 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Nucleolus | 0 | 0 | 2.3 | 2.1 | 3.5 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Peroxisomes | -5.1 | -7.6 | -12.2 | -12.5 | -12.7 | 0 | 0 | 0 | 0 | -6.1 | -5.1 | -5.8 | 0.4 | -3.7 | -5.9 |
SpindlePole | -7.9 | -6.3 | -8.4 | -6.6 | -7.0 | 0 | 0 | 0 | 0 | -4.3 | -3.4 | -5.7 | -2.9 | -2.5 | -2.1 |
Vacuole | -1.7 | 3.9 | 2.9 | 3.7 | 2.7 | -1.2 | -0.8 | -0.9 | -2.7 | -0.3 | 1.3 | 0.9 | 3.5 | 2.9 | 3.8 |
R1 | R2 | R3 | ||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
G1 Pre-START | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | G1 Pre-START | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | G1 Pre-START | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | |
Concentration | 6.3195 | 8.043 | 7.3109 | 6.1239 | 6.2226 | 7.7151 | 7.6608 | 9.8855 | 8.8 | 8.5183 | 8.7818 | 9.4067 | 5.6921 | 6.2359 | 6.8434 | 5.3323 | 5.8363 | 6.6298 |
Actin | 0.0489 | 0.0556 | 0.0416 | 0.0407 | 0.0034 | 0.0093 | 0.1158 | 0.0188 | 0.0711 | 0.0137 | 0.0533 | 0.0509 | 0.0741 | 0.047 | 0.031 | 0.0509 | 0.0468 | 0.0316 |
Bud | 0.0004 | 0.0035 | 0.0003 | 0.0006 | 0.0002 | 0.0001 | 0.0007 | 0.0004 | 0.0015 | 0.0001 | 0.0004 | 0.0002 | 0.0004 | 0.0015 | 0.0004 | 0.0155 | 0.0005 | 0.0044 |
Bud Neck | 0.0006 | 0.0004 | 0.0004 | 0.0002 | 0.0001 | 0.0002 | 0.0008 | 0.0004 | 0.001 | 0.0001 | 0.0006 | 0.0003 | 0.0005 | 0.0005 | 0.0007 | 0.0006 | 0.0008 | 0.0011 |
Bud Periphery | 0.0007 | 0.0021 | 0.0005 | 0.0011 | 0.0003 | 0.0002 | 0.0011 | 0.0005 | 0.0028 | 0.0002 | 0.001 | 0.0006 | 0.0007 | 0.0017 | 0.0005 | 0.0213 | 0.0009 | 0.0031 |
Bud Site | 0.0015 | 0.0092 | 0.0017 | 0.0013 | 0.0003 | 0.0002 | 0.0032 | 0.0023 | 0.0064 | 0.0002 | 0.0046 | 0.0004 | 0.0024 | 0.0196 | 0.0025 | 0.0049 | 0.0027 | 0.0013 |
Cell Periphery | 0.0003 | 0.0002 | 0.0002 | 0.0001 | 0.0001 | 0.0001 | 0.0003 | 0.0001 | 0.0001 | 0 | 0.0007 | 0.0002 | 0.0003 | 0.0004 | 0.0002 | 0.0004 | 0.0002 | 0.0002 |
Cytoplasm | 0.0002 | 0.0002 | 0.0002 | 0.0001 | 0.0002 | 0.0001 | 0.0006 | 0.0052 | 0.0006 | 0 | 0.0015 | 0.0001 | 0.0007 | 0.0006 | 0.0003 | 0.0053 | 0.0003 | 0.0003 |
Cytoplasmic Foci | 0.0158 | 0.0172 | 0.0122 | 0.0119 | 0.0127 | 0.0045 | 0.0294 | 0.0265 | 0.0149 | 0.0167 | 0.0149 | 0.008 | 0.0265 | 0.0207 | 0.0133 | 0.0214 | 0.0132 | 0.0102 |
Eisosomes | 0.0006 | 0.0004 | 0.0006 | 0.0005 | 0.0002 | 0.0003 | 0.0009 | 0.0008 | 0.0008 | 0.0003 | 0.0016 | 0.0007 | 0.0005 | 0.0004 | 0.0003 | 0.0003 | 0.0006 | 0.0007 |
Endoplasmic Reticulum | 0.0002 | 0.0001 | 0.0002 | 0.0001 | 0.0002 | 0.0002 | 0.0028 | 0.0008 | 0.0002 | 0 | 0.0025 | 0.0001 | 0.0003 | 0.0003 | 0.0002 | 0.0008 | 0.0006 | 0.0002 |
Endosome | 0.0248 | 0.0257 | 0.0269 | 0.0051 | 0.046 | 0.0125 | 0.0298 | 0.0362 | 0.012 | 0.0043 | 0.0122 | 0.0149 | 0.0363 | 0.0428 | 0.0211 | 0.0154 | 0.0317 | 0.0191 |
Golgi | 0.0762 | 0.0843 | 0.064 | 0.0146 | 0.0423 | 0.0633 | 0.1 | 0.0691 | 0.0553 | 0.013 | 0.0662 | 0.0887 | 0.0994 | 0.1209 | 0.075 | 0.0312 | 0.0966 | 0.0859 |
Lipid Particles | 0.0455 | 0.0132 | 0.0298 | 0.0181 | 0.0277 | 0.0117 | 0.0536 | 0.0059 | 0.0371 | 0.0304 | 0.016 | 0.0123 | 0.0595 | 0.0101 | 0.0247 | 0.0239 | 0.0129 | 0.0386 |
Mitochondria | 0.669 | 0.6849 | 0.7143 | 0.7472 | 0.7767 | 0.8174 | 0.545 | 0.7275 | 0.7288 | 0.8324 | 0.7203 | 0.7276 | 0.6073 | 0.6365 | 0.7716 | 0.7086 | 0.6964 | 0.7102 |
None | 0.0134 | 0.0001 | 0.0001 | 0.0002 | 0.0001 | 0.0001 | 0.0006 | 0.0001 | 0.0002 | 0 | 0.0061 | 0.0001 | 0.0018 | 0.0001 | 0.0001 | 0.0027 | 0.0003 | 0.0001 |
Nuclear Periphery | 0.0002 | 0.0001 | 0.0001 | 0.0002 | 0.0003 | 0.0001 | 0.0068 | 0.0003 | 0.0001 | 0 | 0.001 | 0 | 0.0007 | 0.0002 | 0.0001 | 0.0027 | 0.0005 | 0.0005 |
Nucleolus | 0.0002 | 0.0001 | 0.0001 | 0.0001 | 0.0002 | 0.0001 | 0.0014 | 0.0001 | 0.0001 | 0 | 0.0005 | 0.0001 | 0.0054 | 0.0002 | 0.0003 | 0.0003 | 0.0001 | 0.0002 |
Nucleus | 0.0001 | 0.0001 | 0.0001 | 0.0001 | 0.0001 | 0.0001 | 0.0008 | 0.0001 | 0.0001 | 0 | 0.0005 | 0.0001 | 0.0009 | 0.0002 | 0.0001 | 0.0016 | 0.0002 | 0.0002 |
Peroxisomes | 0.096 | 0.1001 | 0.1019 | 0.1563 | 0.0823 | 0.0762 | 0.0894 | 0.1021 | 0.064 | 0.0876 | 0.0936 | 0.091 | 0.068 | 0.089 | 0.0541 | 0.0753 | 0.0907 | 0.0889 |
Punctate Nuclear | 0.0003 | 0.0001 | 0.0001 | 0.0001 | 0.0001 | 0 | 0.0017 | 0.0002 | 0.0002 | 0.0004 | 0.001 | 0 | 0.0022 | 0.0001 | 0.0003 | 0.0152 | 0.0004 | 0.0003 |
Vacuole | 0.0022 | 0.001 | 0.0017 | 0.0004 | 0.003 | 0.0011 | 0.0094 | 0.001 | 0.0009 | 0.0001 | 0.0007 | 0.0019 | 0.0059 | 0.0034 | 0.0015 | 0.0012 | 0.0012 | 0.0008 |
Vacuole Periphery | 0.0028 | 0.0013 | 0.0032 | 0.001 | 0.0033 | 0.0024 | 0.0059 | 0.0017 | 0.0019 | 0.0002 | 0.0007 | 0.0018 | 0.006 | 0.0038 | 0.0018 | 0.0005 | 0.0026 | 0.0021 |
R1 | R2 | |||||||||
---|---|---|---|---|---|---|---|---|---|---|
G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | |
Gene Expression | 14.2458 | 19.6812 | 9.4498 | 15.8238 | 10.9143 | 10.3549 | 16.388 | 15.8011 | 15.2589 | 18.7968 |
Translational Efficiency | 1.2376 | 0.9744 | 1.5344 | 0.8658 | 1.5903 | 1.4586 | 1.071 | 0.7982 | 0.9027 | 0.9159 |
Dataset | Hit |
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Protein Concentration | ✘ |
Protein Localization | ✘ |
Gene Expression | ✘ |
Translational Efficiency | ✘ |
Temp | Actin Patch (Sac6-tdTomato) | Cortical Patch (Sla1-GFP) | Late Endosome (Snf7-GFP) | Vacuole (Vph1-GFP) |
---|---|---|---|---|
37℃ | ||||
RT |
Gene / Allele | Actin Patch (Sac6-tdTomato) | Cortical Patch (Sla1-GFP) | Late Endosome (Snf7-GFP) | Vacuole (Sac6-tdTomato) |
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Gene | Images |
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Gene | Images |
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