Standard name | |
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Human Ortholog | |
Description | Protein involved in an early step of 60S ribosomal subunit biogenesis; essential for cell growth and replication of killer M1 dsRNA virus; contains four beta-transducin repeats |
ensLOC | DeepLoc | |||||||||||||||||||||||
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Localization | WT1 | WT2 | WT3 | RAP60 | RAP140 | RAP220 | RAP300 | RAP380 | RAP460 | RAP540 | RAP620 | RAP700 | HU80 | HU120 | HU160 | rpd3Δ_1 | rpd3Δ_2 | rpd3Δ_3 | WT1 | WT2 | WT3 | AF100 | AF140 | AF180 |
Cortical Patches | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 |
Bud | 0 | 0 | 0 | 1 | 0 | 1 | 1 | 7 | 4 | 5 | 6 | 2 | 0 | 0 | 0 | 0 | 0 | 0 | 3 | 0 | 4 | 1 | 5 | 4 |
Bud Neck | 0 | 0 | 1 | 13 | 5 | 3 | 3 | 2 | 1 | 0 | 2 | 0 | 2 | 11 | 15 | 0 | 0 | 0 | 0 | 0 | 2 | 0 | 3 | 4 |
Bud Site | 0 | 0 | 0 | 2 | 0 | 5 | 5 | 8 | 13 | 9 | 14 | 4 | 0 | 0 | 0 | 0 | 0 | 0 | – | – | – | – | – | – |
Cell Periphery | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Cytoplasm | 5 | 0 | 11 | 7 | 11 | 16 | 7 | 22 | 14 | 5 | 11 | 10 | 4 | 29 | 50 | 0 | 3 | 1 | 0 | 0 | 0 | 0 | 0 | 0 |
Endoplasmic Reticulum | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 |
Endosome | 3 | 0 | 33 | 9 | 39 | 81 | 81 | 59 | 32 | 25 | 56 | 57 | 1 | 5 | 10 | 2 | 1 | 1 | 5 | 4 | 13 | 5 | 27 | 43 |
Golgi | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 4 | 0 | 0 | 1 |
Mitochondria | 4 | 16 | 10 | 5 | 7 | 41 | 39 | 68 | 42 | 62 | 82 | 64 | 1 | 0 | 1 | 2 | 6 | 0 | 1 | 1 | 7 | 4 | 9 | 10 |
Nucleus | 105 | 48 | 72 | 11 | 28 | 24 | 33 | 41 | 25 | 23 | 28 | 34 | 6 | 14 | 17 | 3 | 1 | 1 | 68 | 34 | 35 | 16 | 15 | 9 |
Nuclear Periphery | 8 | 2 | 22 | 0 | 3 | 3 | 4 | 3 | 3 | 6 | 2 | 6 | 0 | 1 | 0 | 0 | 1 | 0 | 6 | 1 | 22 | 3 | 5 | 7 |
Nucleolus | 131 | 68 | 244 | 232 | 202 | 330 | 345 | 391 | 227 | 239 | 342 | 306 | 87 | 233 | 274 | 11 | 18 | 18 | 179 | 76 | 230 | 114 | 183 | 144 |
Peroxisomes | 0 | 0 | 1 | 17 | 13 | 39 | 46 | 40 | 17 | 16 | 14 | 26 | 2 | 3 | 2 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 3 | 4 |
SpindlePole | 3 | 0 | 37 | 124 | 72 | 169 | 218 | 221 | 101 | 119 | 146 | 160 | 45 | 121 | 136 | 0 | 1 | 1 | 4 | 2 | 51 | 27 | 75 | 59 |
Vac/Vac Membrane | 9 | 2 | 10 | 0 | 8 | 5 | 10 | 5 | 8 | 5 | 5 | 7 | 0 | 1 | 3 | 2 | 2 | 1 | 8 | 2 | 13 | 6 | 16 | 17 |
Unique Cell Count | 241 | 118 | 337 | 259 | 259 | 430 | 463 | 561 | 304 | 326 | 443 | 417 | 97 | 276 | 351 | 16 | 24 | 21 | 283 | 126 | 395 | 183 | 358 | 317 |
Labelled Cell Count | 268 | 136 | 441 | 421 | 388 | 718 | 792 | 867 | 487 | 514 | 708 | 676 | 148 | 418 | 508 | 20 | 33 | 23 | 283 | 126 | 395 | 183 | 358 | 317 |
Screen | WT1 | WT2 | WT3 | RAP60 | RAP140 | RAP220 | RAP300 | RAP380 | RAP460 | RAP540 | RAP620 | RAP700 | HU80 | HU120 | HU160 | rpd3Δ_1 | rpd3Δ_2 | rpd3Δ_3 | AF100 | AF140 | AF180 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Mean Cell GFP Intensity (1e-4) | 11.1 | 10.9 | 11.2 | 10.8 | 9.8 | 7.2 | 7.0 | 7.1 | 6.8 | 6.8 | 6.7 | 6.9 | 10.8 | 11.1 | 10.6 | 15.0 | 16.0 | 17.7 | 12.8 | 12.8 | 12.8 |
Std Deviation (1e-4) | 3.1 | 2.4 | 3.5 | 3.3 | 4.2 | 2.6 | 2.6 | 2.8 | 2.2 | 2.5 | 2.1 | 2.5 | 2.5 | 4.3 | 3.6 | 6.1 | 7.4 | 4.2 | 4.6 | 3.6 | 4.0 |
Intensity Change (Log2) | – | – | – | -0.06 | -0.19 | -0.63 | -0.67 | -0.65 | -0.72 | -0.73 | -0.75 | -0.71 | -0.05 | -0.02 | -0.09 | 0.42 | 0.51 | 0.66 | 0.19 | 0.2 | 0.19 |
Localization | RAP60 | RAP140 | RAP220 | RAP300 | RAP380 | RAP460 | RAP540 | RAP620 | RAP700 | HU80 | HU120 | HU160 | rpd3Δ_1 | rpd3Δ_2 | rpd3Δ_3 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Cortical Patches | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Bud | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Bud Neck | 3.8 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 3.3 | 3.5 | 0 | 0 | 0 |
Bud Site | 0 | 0 | 0 | 0 | 0 | 3.8 | 0 | 3.3 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Cell Periphery | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Cytoplasm | -0.4 | 0.6 | 0.3 | -1.7 | 0.5 | 0.9 | -1.5 | -0.7 | -0.7 | 0 | 3.6 | 5.1 | 0 | 0 | 0 |
Endoplasmic Reticulum | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Endosome | -3.0 | 2.0 | 3.5 | 3.1 | 0.3 | 0.3 | -1.0 | 1.2 | 1.6 | -2.8 | -4.1 | -3.8 | 0 | 0 | 0 |
Golgi | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Mitochondria | -0.8 | -0.2 | 3.6 | 3.2 | 4.7 | 5.0 | 6.6 | 6.7 | 5.7 | 0 | 0 | -2.8 | 0 | 0 | 0 |
Nucleus | -6.0 | -3.4 | -6.6 | -5.9 | -6.1 | -4.6 | -5.3 | -6.2 | -5.2 | -3.4 | -5.8 | -6.5 | 0 | 0 | 0 |
Nuclear Periphery | -4.2 | -3.2 | -4.5 | -4.5 | -5.3 | -3.6 | -3.0 | -4.9 | -3.7 | 0 | -4.0 | -4.9 | 0 | 0 | 0 |
Nucleolus | 5.2 | 1.6 | 1.4 | 0.7 | -0.9 | 0.6 | 0.3 | 1.5 | 0.3 | 3.5 | 3.6 | 1.7 | -0.3 | 0.3 | 1.3 |
Peroxisomes | 4.4 | 3.8 | 5.4 | 5.7 | 4.7 | 4.1 | 3.8 | 2.9 | 4.4 | 0 | 0 | 0 | 0 | 0 | 0 |
SpindlePole | 10.1 | 5.3 | 8.8 | 10.8 | 9.1 | 6.8 | 7.7 | 7.2 | 8.5 | 7.9 | 9.3 | 8.4 | 0 | 0 | 0 |
Vacuole | 0 | 0.1 | -1.8 | -0.7 | -2.4 | -0.3 | -1.2 | -1.9 | -1.2 | 0 | 0 | -2.0 | 0 | 0 | 0 |
R1 | R2 | R3 | ||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
G1 Pre-START | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | G1 Pre-START | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | G1 Pre-START | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | |
Concentration | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – |
Actin | 0.0101 | 0 | 0.0021 | 0.0193 | 0 | 0.0272 | 0.0228 | 0 | 0.0021 | 0 | 0.001 | 0 | – | – | – | – | – | – |
Bud | 0.0002 | 0.0001 | 0.0003 | 0.0007 | 0 | 0.0002 | 0.0002 | 0 | 0.0001 | 0 | 0.0002 | 0 | – | – | – | – | – | – |
Bud Neck | 0.0006 | 0.0005 | 0.0003 | 0.0012 | 0.0002 | 0.0008 | 0.0039 | 0.0003 | 0.0029 | 0.0008 | 0.0006 | 0.0004 | – | – | – | – | – | – |
Bud Periphery | 0.0003 | 0.0002 | 0.0003 | 0.0017 | 0.0001 | 0.0006 | 0.0004 | 0.0001 | 0.0002 | 0.0002 | 0.0004 | 0.0002 | – | – | – | – | – | – |
Bud Site | 0.0011 | 0.0004 | 0.0015 | 0.0009 | 0.0001 | 0.0003 | 0.0047 | 0.0002 | 0.0025 | 0.0003 | 0.0009 | 0.0001 | – | – | – | – | – | – |
Cell Periphery | 0.0002 | 0.0004 | 0.0001 | 0.0003 | 0 | 0.0005 | 0.0007 | 0.0001 | 0.0003 | 0.0002 | 0.0005 | 0.0002 | – | – | – | – | – | – |
Cytoplasm | 0.0066 | 0.0001 | 0.0031 | 0.0007 | 0.0001 | 0.0001 | 0.0005 | 0 | 0.001 | 0 | 0.0009 | 0 | – | – | – | – | – | – |
Cytoplasmic Foci | 0.0301 | 0.002 | 0.0017 | 0.0015 | 0.0128 | 0.0023 | 0.0202 | 0.0018 | 0.0159 | 0.0085 | 0.015 | 0.0005 | – | – | – | – | – | – |
Eisosomes | 0.0001 | 0 | 0 | 0.0003 | 0 | 0.0002 | 0.0003 | 0 | 0.0001 | 0 | 0.0001 | 0 | – | – | – | – | – | – |
Endoplasmic Reticulum | 0.0074 | 0 | 0.0007 | 0.0094 | 0 | 0.0004 | 0.0006 | 0 | 0.0002 | 0 | 0.0006 | 0 | – | – | – | – | – | – |
Endosome | 0.0189 | 0.0004 | 0.0038 | 0.0069 | 0.0004 | 0.0057 | 0.0051 | 0.0001 | 0.0055 | 0.0004 | 0.0057 | 0.0001 | – | – | – | – | – | – |
Golgi | 0.0065 | 0.0001 | 0.0019 | 0.0015 | 0.0003 | 0.0109 | 0.0038 | 0.0002 | 0.0044 | 0.0004 | 0.003 | 0.0002 | – | – | – | – | – | – |
Lipid Particles | 0.0215 | 0.0022 | 0.0011 | 0.002 | 0.0338 | 0.0068 | 0.028 | 0.006 | 0.0288 | 0.0221 | 0.1119 | 0.0066 | – | – | – | – | – | – |
Mitochondria | 0.0114 | 0.0004 | 0.001 | 0.006 | 0.001 | 0.0272 | 0.0034 | 0.002 | 0.0187 | 0.0022 | 0.0044 | 0.0003 | – | – | – | – | – | – |
None | 0.0022 | 0.0001 | 0.0005 | 0.0009 | 0.0002 | 0.0001 | 0.0008 | 0 | 0.0075 | 0.0001 | 0.0013 | 0 | – | – | – | – | – | – |
Nuclear Periphery | 0.0083 | 0.0014 | 0.0054 | 0.0094 | 0.0792 | 0.0233 | 0.0083 | 0.0206 | 0.0017 | 0.0065 | 0.0672 | 0.0119 | – | – | – | – | – | – |
Nucleolus | 0.6731 | 0.768 | 0.8524 | 0.7823 | 0.5858 | 0.7279 | 0.7727 | 0.8705 | 0.8219 | 0.881 | 0.541 | 0.8782 | – | – | – | – | – | – |
Nucleus | 0.1277 | 0.1982 | 0.0968 | 0.131 | 0.2553 | 0.1534 | 0.0814 | 0.0759 | 0.0584 | 0.0614 | 0.1456 | 0.0808 | – | – | – | – | – | – |
Peroxisomes | 0.0122 | 0.0001 | 0.0002 | 0.0002 | 0.0005 | 0.0016 | 0.0047 | 0.0001 | 0.002 | 0.001 | 0.0024 | 0.0001 | – | – | – | – | – | – |
Punctate Nuclear | 0.0594 | 0.0175 | 0.0259 | 0.0212 | 0.0282 | 0.0064 | 0.0312 | 0.0185 | 0.0231 | 0.0128 | 0.0854 | 0.0175 | – | – | – | – | – | – |
Vacuole | 0.0013 | 0.0068 | 0.0006 | 0.0013 | 0.0004 | 0.0014 | 0.0022 | 0.0003 | 0.0014 | 0.0008 | 0.0035 | 0.0005 | – | – | – | – | – | – |
Vacuole Periphery | 0.0008 | 0.0013 | 0.0002 | 0.0012 | 0.0015 | 0.0025 | 0.004 | 0.0033 | 0.0012 | 0.001 | 0.0086 | 0.0026 | – | – | – | – | – | – |
R1 | R2 | |||||||||
---|---|---|---|---|---|---|---|---|---|---|
G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | |
Gene Expression | 26.2715 | 28.743 | 27.0509 | 27.5834 | 29.9951 | 24.2975 | 25.3407 | 21.0502 | 20.4777 | 26.3502 |
Translational Efficiency | 2.7452 | 2.1372 | 1.9547 | 1.8752 | 1.5225 | 1.8554 | 1.7744 | 1.5866 | 1.3349 | 1.5411 |
Dataset | Hit |
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Protein Concentration | – |
Protein Localization | ✘ |
Gene Expression | ✘ |
Translational Efficiency | ✘ |
Temp | Actin Patch (Sac6-tdTomato) | Cortical Patch (Sla1-GFP) | Late Endosome (Snf7-GFP) | Vacuole (Vph1-GFP) |
---|---|---|---|---|
37℃ | ||||
RT |
Gene / Allele | Actin Patch (Sac6-tdTomato) | Cortical Patch (Sla1-GFP) | Late Endosome (Snf7-GFP) | Vacuole (Sac6-tdTomato) |
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Gene | Images |
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Gene | Images |
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