Standard name | |
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Human Ortholog | |
Description | tRNA threonylcarbamoyladenosine dehydratase; required for the ct6A tRNA base modification, where an adenosine at position 37 is modified to form a cyclized active ester with an oxazolone ring; localized to the mitochondrial outer membrane; TCD2 has a paralog, TCD1, that arose from the whole genome duplication |
ensLOC | DeepLoc | |||||||||||||||||||||||
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Localization | WT1 | WT2 | WT3 | RAP60 | RAP140 | RAP220 | RAP300 | RAP380 | RAP460 | RAP540 | RAP620 | RAP700 | HU80 | HU120 | HU160 | rpd3Δ_1 | rpd3Δ_2 | rpd3Δ_3 | WT1 | WT2 | WT3 | AF100 | AF140 | AF180 |
Cortical Patches | 2 | 1 | 1 | 0 | 0 | 0 | 1 | 1 | 0 | 1 | 1 | 0 | 2 | 0 | 2 | 3 | 1 | 2 | 4 | 1 | 3 | 2 | 9 | 8 |
Bud | 1 | 1 | 0 | 7 | 2 | 4 | 9 | 5 | 11 | 9 | 9 | 10 | 1 | 1 | 2 | 1 | 3 | 0 | 0 | 0 | 0 | 1 | 2 | 4 |
Bud Neck | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 1 | 1 |
Bud Site | 1 | 1 | 1 | 0 | 2 | 3 | 3 | 3 | 1 | 7 | 2 | 2 | 0 | 0 | 0 | 0 | 0 | 1 | – | – | – | – | – | – |
Cell Periphery | 4 | 4 | 10 | 2 | 1 | 3 | 3 | 1 | 1 | 2 | 2 | 3 | 7 | 20 | 12 | 4 | 6 | 2 | 0 | 0 | 0 | 0 | 0 | 0 |
Cytoplasm | 0 | 0 | 5 | 12 | 21 | 11 | 13 | 10 | 16 | 12 | 7 | 2 | 5 | 10 | 5 | 4 | 6 | 8 | 0 | 0 | 0 | 0 | 1 | 0 |
Endoplasmic Reticulum | 2 | 1 | 0 | 0 | 2 | 0 | 5 | 4 | 2 | 3 | 3 | 3 | 3 | 0 | 4 | 2 | 5 | 2 | 1 | 0 | 0 | 1 | 1 | 2 |
Endosome | 1 | 0 | 1 | 0 | 4 | 1 | 2 | 9 | 4 | 1 | 3 | 7 | 0 | 6 | 3 | 2 | 2 | 0 | 4 | 2 | 1 | 4 | 6 | 4 |
Golgi | 4 | 3 | 10 | 2 | 7 | 1 | 0 | 3 | 0 | 0 | 0 | 0 | 51 | 155 | 208 | 13 | 21 | 6 | 17 | 13 | 13 | 26 | 44 | 32 |
Mitochondria | 315 | 118 | 247 | 155 | 238 | 264 | 369 | 378 | 373 | 560 | 351 | 542 | 183 | 224 | 243 | 6 | 10 | 1 | 286 | 98 | 239 | 157 | 251 | 227 |
Nucleus | 0 | 1 | 0 | 0 | 1 | 1 | 3 | 4 | 6 | 2 | 1 | 4 | 1 | 1 | 0 | 0 | 3 | 1 | 0 | 0 | 0 | 1 | 3 | 0 |
Nuclear Periphery | 19 | 3 | 4 | 4 | 9 | 28 | 48 | 56 | 41 | 60 | 28 | 57 | 7 | 2 | 2 | 3 | 6 | 1 | 2 | 0 | 0 | 0 | 2 | 1 |
Nucleolus | 31 | 8 | 9 | 3 | 22 | 45 | 62 | 52 | 39 | 55 | 29 | 43 | 4 | 2 | 0 | 3 | 6 | 2 | 0 | 1 | 0 | 0 | 1 | 2 |
Peroxisomes | 0 | 0 | 9 | 1 | 5 | 1 | 4 | 0 | 4 | 2 | 3 | 4 | 4 | 3 | 2 | 2 | 6 | 4 | 4 | 0 | 19 | 2 | 6 | 4 |
SpindlePole | 0 | 1 | 0 | 0 | 1 | 0 | 2 | 4 | 1 | 6 | 1 | 5 | 1 | 0 | 0 | 1 | 1 | 1 | 0 | 0 | 0 | 0 | 1 | 0 |
Vac/Vac Membrane | 34 | 16 | 19 | 1 | 18 | 10 | 11 | 19 | 21 | 36 | 19 | 45 | 37 | 98 | 67 | 12 | 31 | 14 | 6 | 7 | 2 | 18 | 36 | 24 |
Unique Cell Count | 330 | 126 | 269 | 172 | 281 | 289 | 416 | 432 | 425 | 619 | 378 | 580 | 223 | 357 | 345 | 43 | 96 | 42 | 333 | 129 | 283 | 220 | 376 | 317 |
Labelled Cell Count | 414 | 158 | 316 | 187 | 333 | 372 | 535 | 549 | 520 | 756 | 459 | 727 | 306 | 522 | 550 | 56 | 108 | 45 | 333 | 129 | 283 | 220 | 376 | 317 |
Screen | WT1 | WT2 | WT3 | RAP60 | RAP140 | RAP220 | RAP300 | RAP380 | RAP460 | RAP540 | RAP620 | RAP700 | HU80 | HU120 | HU160 | rpd3Δ_1 | rpd3Δ_2 | rpd3Δ_3 | AF100 | AF140 | AF180 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Mean Cell GFP Intensity (1e-4) | 11.0 | 13.9 | 12.3 | 10.8 | 10.0 | 8.5 | 8.2 | 8.3 | 8.1 | 7.8 | 7.3 | 7.5 | 12.9 | 13.0 | 12.1 | 12.0 | 11.7 | 11.2 | 13.7 | 13.4 | 14.9 |
Std Deviation (1e-4) | 1.9 | 3.3 | 2.8 | 2.7 | 2.4 | 2.6 | 2.1 | 2.5 | 2.4 | 2.3 | 2.0 | 1.9 | 2.5 | 2.2 | 2.1 | 3.3 | 3.0 | 3.8 | 2.8 | 3.2 | 3.0 |
Intensity Change (Log2) | – | – | – | -0.19 | -0.3 | -0.53 | -0.59 | -0.56 | -0.61 | -0.66 | -0.75 | -0.72 | 0.07 | 0.08 | -0.02 | -0.04 | -0.07 | -0.13 | 0.16 | 0.12 | 0.27 |
Localization | RAP60 | RAP140 | RAP220 | RAP300 | RAP380 | RAP460 | RAP540 | RAP620 | RAP700 | HU80 | HU120 | HU160 | rpd3Δ_1 | rpd3Δ_2 | rpd3Δ_3 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Cortical Patches | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Bud | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Bud Neck | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Bud Site | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Cell Periphery | 0 | -2.8 | -2.1 | -2.8 | 0 | 0 | 0 | 0 | 0 | -0.3 | 1.1 | -0.2 | 0 | 0 | 0 |
Cytoplasm | 2.7 | 3.1 | 1.4 | 1.0 | 0.4 | 1.4 | 0.1 | 0 | 0 | 0 | 0.8 | 0 | 0 | 0 | 0 |
Endoplasmic Reticulum | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Endosome | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Golgi | 0 | -0.8 | -2.9 | 0 | 0 | 0 | 0 | 0 | 0 | 6.4 | 11.2 | 14.5 | 0 | 5.5 | 0 |
Mitochondria | -0.6 | -2.6 | -0.2 | -1.3 | -1.8 | -1.7 | -0.6 | 0.5 | 0.9 | -3.2 | -8.3 | -6.5 | -12.1 | -15.0 | -13.4 |
Nucleus | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Nuclear Periphery | 0 | 1.3 | 4.2 | 4.9 | 5.3 | 4.3 | 4.3 | 3.4 | 4.4 | 0 | 0 | 0 | 0 | 0 | 0 |
Nucleolus | 0 | 2.3 | 4.9 | 4.8 | 4.0 | 2.9 | 2.9 | 2.3 | 2.3 | -1.1 | 0 | 0 | 0 | 0 | 0 |
Peroxisomes | 0 | -1.2 | 0 | -2.2 | 0 | -2.3 | 0 | 0 | 0 | -1.1 | -2.3 | 0 | 0 | 0 | 0 |
SpindlePole | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Vacuole | -3.2 | -0.3 | -1.9 | -2.8 | -1.5 | -1.2 | -0.7 | -1.1 | 0.4 | 3.3 | 6.5 | 4.4 | 0 | 6.2 | 0 |
R1 | R2 | R3 | ||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
G1 Pre-START | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | G1 Pre-START | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | G1 Pre-START | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | |
Concentration | 8.7795 | 8.9542 | 9.3934 | 9.321 | 8.6666 | 9.196 | 7.559 | 8.3157 | 8.0436 | 7.2683 | 7.411 | 7.8881 | 6.372 | 7.2899 | 6.8466 | 6.6322 | 5.1987 | 7.0715 |
Actin | 0.0062 | 0.0231 | 0.0195 | 0.0001 | 0.0001 | 0.0004 | 0.0468 | 0.0071 | 0.0088 | 0.0122 | 0.0567 | 0.002 | 0.0429 | 0.0175 | 0.0011 | 0.0148 | 0.0789 | 0.0014 |
Bud | 0.0005 | 0.002 | 0.0031 | 0.0001 | 0.0001 | 0 | 0.0015 | 0.0008 | 0.0006 | 0.0027 | 0.0004 | 0.0001 | 0.0006 | 0.0003 | 0.0002 | 0.0014 | 0.0014 | 0.0001 |
Bud Neck | 0.0004 | 0.0008 | 0.001 | 0 | 0 | 0.0001 | 0.0011 | 0.0002 | 0.0002 | 0.0002 | 0.0001 | 0.0001 | 0.0014 | 0.0006 | 0.0004 | 0.0001 | 0.0015 | 0 |
Bud Periphery | 0.0009 | 0.0028 | 0.0034 | 0.0005 | 0.0009 | 0.0002 | 0.0041 | 0.0012 | 0.0012 | 0.0061 | 0.0018 | 0.0004 | 0.001 | 0.0005 | 0.0006 | 0.0026 | 0.0031 | 0.0001 |
Bud Site | 0.0014 | 0.0213 | 0.0038 | 0.0001 | 0 | 0 | 0.0061 | 0.0023 | 0.0031 | 0.0009 | 0.0002 | 0.0002 | 0.0037 | 0.003 | 0.0003 | 0.0008 | 0.0059 | 0 |
Cell Periphery | 0.0003 | 0.0013 | 0.0006 | 0.0003 | 0.0002 | 0.0001 | 0.0008 | 0.0006 | 0.0003 | 0.0013 | 0.0003 | 0.0001 | 0.0004 | 0.0015 | 0.0006 | 0.0001 | 0.0006 | 0.0001 |
Cytoplasm | 0.0006 | 0.0003 | 0.0006 | 0 | 0 | 0.0001 | 0.0024 | 0.0019 | 0.0003 | 0.0003 | 0.0001 | 0.0001 | 0.01 | 0 | 0 | 0.0001 | 0.0027 | 0.0002 |
Cytoplasmic Foci | 0.0066 | 0.0075 | 0.0065 | 0.0001 | 0.0001 | 0.0005 | 0.0069 | 0.0032 | 0.003 | 0.0012 | 0.0012 | 0.0011 | 0.0117 | 0.0023 | 0.0004 | 0.006 | 0.0446 | 0.0006 |
Eisosomes | 0.0002 | 0.0004 | 0.0015 | 0 | 0 | 0.0001 | 0.0009 | 0.0004 | 0.0003 | 0.0002 | 0.0001 | 0.0002 | 0.0011 | 0.0005 | 0.0001 | 0.0004 | 0.0009 | 0.0001 |
Endoplasmic Reticulum | 0.0004 | 0.0002 | 0.0006 | 0 | 0 | 0.0001 | 0.0044 | 0.0007 | 0.0003 | 0.0004 | 0.0001 | 0.0007 | 0.0031 | 0.0001 | 0.0001 | 0 | 0.0041 | 0.0003 |
Endosome | 0.0304 | 0.0205 | 0.0078 | 0.002 | 0.0005 | 0.006 | 0.0276 | 0.0134 | 0.0056 | 0.0105 | 0.0036 | 0.0076 | 0.0191 | 0.0019 | 0.005 | 0.0067 | 0.0351 | 0.004 |
Golgi | 0.0313 | 0.0419 | 0.0102 | 0.0008 | 0.0007 | 0.0097 | 0.0185 | 0.0245 | 0.0134 | 0.0179 | 0.0034 | 0.0175 | 0.0129 | 0.0028 | 0.0053 | 0.0332 | 0.0198 | 0.0046 |
Lipid Particles | 0.0074 | 0.0212 | 0.0074 | 0.0013 | 0.0003 | 0.0024 | 0.0152 | 0.0021 | 0.0026 | 0.001 | 0.0031 | 0.0026 | 0.0204 | 0.0138 | 0.0038 | 0.0023 | 0.0252 | 0.0008 |
Mitochondria | 0.8907 | 0.8197 | 0.9081 | 0.979 | 0.9879 | 0.9616 | 0.8182 | 0.9111 | 0.9413 | 0.9374 | 0.8752 | 0.9587 | 0.8273 | 0.9339 | 0.9697 | 0.9241 | 0.6471 | 0.9836 |
None | 0.0001 | 0.0001 | 0.0106 | 0 | 0 | 0.0021 | 0.0016 | 0.0004 | 0.0002 | 0.0001 | 0 | 0.0001 | 0.0088 | 0.0001 | 0 | 0.0001 | 0.0036 | 0.0001 |
Nuclear Periphery | 0.0001 | 0.0002 | 0.0004 | 0 | 0 | 0.0003 | 0.0068 | 0.0002 | 0.0019 | 0.0003 | 0.0002 | 0.0024 | 0.0058 | 0.0005 | 0 | 0 | 0.0208 | 0.0013 |
Nucleolus | 0.0003 | 0.0004 | 0.0004 | 0.0003 | 0 | 0.0033 | 0.0016 | 0.004 | 0.0009 | 0.0002 | 0.0002 | 0.0001 | 0.0009 | 0.0004 | 0.0007 | 0.0001 | 0.0063 | 0.0001 |
Nucleus | 0.0002 | 0.0002 | 0.0003 | 0.0001 | 0 | 0.0019 | 0.0025 | 0.0015 | 0.0017 | 0.0002 | 0.0002 | 0.0002 | 0.0043 | 0.0002 | 0.0002 | 0.0001 | 0.0071 | 0.0007 |
Peroxisomes | 0.0083 | 0.011 | 0.0079 | 0.0007 | 0.0017 | 0.0012 | 0.0104 | 0.0029 | 0.0025 | 0.0008 | 0.0064 | 0.0011 | 0.0132 | 0.0044 | 0.0012 | 0.0044 | 0.0049 | 0.0005 |
Punctate Nuclear | 0.0001 | 0 | 0.0005 | 0 | 0 | 0.0021 | 0.0027 | 0.0002 | 0.0024 | 0 | 0 | 0.001 | 0.0069 | 0.0026 | 0 | 0 | 0.0408 | 0.0001 |
Vacuole | 0.0035 | 0.0079 | 0.0022 | 0.0079 | 0.002 | 0.0017 | 0.0083 | 0.0096 | 0.0025 | 0.0029 | 0.013 | 0.0006 | 0.0017 | 0.0038 | 0.0053 | 0.0007 | 0.0148 | 0.0004 |
Vacuole Periphery | 0.0101 | 0.017 | 0.0035 | 0.0065 | 0.0051 | 0.0062 | 0.0118 | 0.0117 | 0.0073 | 0.0032 | 0.0337 | 0.0032 | 0.0028 | 0.0093 | 0.0049 | 0.0021 | 0.0309 | 0.001 |
R1 | R2 | |||||||||
---|---|---|---|---|---|---|---|---|---|---|
G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | |
Gene Expression | 28.324 | 32.2921 | 29.9526 | 20.9105 | 14.37 | 24.6159 | 23.1893 | 27.0453 | 22.3526 | 22.6531 |
Translational Efficiency | 0.8874 | 0.7958 | 0.7617 | 1.1198 | 1.4723 | 0.695 | 0.9765 | 0.7106 | 0.7918 | 0.7499 |
Dataset | Hit |
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Protein Concentration | ✘ |
Protein Localization | ✘ |
Gene Expression | ✔ |
Translational Efficiency | ✘ |
Temp | Actin Patch (Sac6-tdTomato) | Cortical Patch (Sla1-GFP) | Late Endosome (Snf7-GFP) | Vacuole (Vph1-GFP) |
---|---|---|---|---|
37℃ | ||||
RT |
Gene / Allele | Actin Patch (Sac6-tdTomato) | Cortical Patch (Sla1-GFP) | Late Endosome (Snf7-GFP) | Vacuole (Sac6-tdTomato) |
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Gene | Images |
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Gene | Images |
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