Standard name | |
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Human Ortholog | |
Description | 5' to 3' exonuclease, 5' flap endonuclease; required for Okazaki fragment processing and maturation, for long-patch base-excision repair and large loop repair (LLR), ribonucleotide excision repair; member of the S. pombe RAD2/FEN1 family; relocalizes to the cytosol in response to hypoxia |
ensLOC | DeepLoc | |||||||||||||||||||||||
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Localization | WT1 | WT2 | WT3 | RAP60 | RAP140 | RAP220 | RAP300 | RAP380 | RAP460 | RAP540 | RAP620 | RAP700 | HU80 | HU120 | HU160 | rpd3Δ_1 | rpd3Δ_2 | rpd3Δ_3 | WT1 | WT2 | WT3 | AF100 | AF140 | AF180 |
Cortical Patches | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Bud | 0 | 0 | 0 | 0 | 0 | 0 | 4 | 6 | 0 | 2 | 2 | 4 | 0 | 0 | 0 | 1 | 1 | 0 | 1 | 1 | 0 | 5 | 6 | 4 |
Bud Neck | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 1 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 3 |
Bud Site | 0 | 0 | 0 | 0 | 0 | 6 | 4 | 12 | 7 | 21 | 5 | 9 | 1 | 0 | 0 | 0 | 0 | 0 | – | – | – | – | – | – |
Cell Periphery | 0 | 0 | 0 | 5 | 0 | 1 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Cytoplasm | 0 | 1 | 8 | 12 | 15 | 23 | 24 | 12 | 19 | 10 | 20 | 4 | 40 | 55 | 82 | 32 | 17 | 16 | 0 | 0 | 0 | 4 | 3 | 3 |
Endoplasmic Reticulum | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 8 | 5 | 2 | 0 | 0 | 0 | 0 | 0 | 0 |
Endosome | 0 | 0 | 0 | 0 | 4 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 3 | 7 | 2 | 2 | 1 | 1 | 1 | 0 | 0 | 4 | 6 |
Golgi | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 3 | 0 | 0 | 0 | 1 | 1 | 0 | 2 |
Mitochondria | 15 | 5 | 3 | 14 | 11 | 54 | 104 | 123 | 70 | 133 | 93 | 125 | 2 | 0 | 1 | 1 | 9 | 2 | 2 | 1 | 0 | 1 | 4 | 7 |
Nucleus | 234 | 145 | 191 | 179 | 295 | 301 | 433 | 390 | 267 | 319 | 234 | 264 | 540 | 409 | 513 | 271 | 286 | 200 | 228 | 139 | 187 | 252 | 367 | 286 |
Nuclear Periphery | 0 | 0 | 2 | 5 | 2 | 5 | 11 | 11 | 1 | 4 | 6 | 2 | 1 | 6 | 8 | 2 | 2 | 1 | 0 | 0 | 0 | 0 | 0 | 6 |
Nucleolus | 4 | 0 | 0 | 6 | 6 | 33 | 56 | 71 | 42 | 69 | 48 | 69 | 0 | 2 | 6 | 11 | 9 | 16 | 3 | 0 | 3 | 1 | 7 | 12 |
Peroxisomes | 1 | 0 | 0 | 0 | 2 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 3 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
SpindlePole | 1 | 0 | 0 | 1 | 1 | 0 | 2 | 1 | 0 | 0 | 0 | 0 | 1 | 4 | 7 | 0 | 1 | 0 | 0 | 0 | 0 | 1 | 2 | 4 |
Vac/Vac Membrane | 1 | 6 | 2 | 9 | 13 | 4 | 15 | 23 | 17 | 16 | 10 | 20 | 13 | 20 | 19 | 12 | 26 | 10 | 7 | 4 | 11 | 27 | 82 | 152 |
Unique Cell Count | 246 | 148 | 201 | 209 | 329 | 376 | 544 | 540 | 371 | 445 | 340 | 393 | 593 | 480 | 627 | 323 | 339 | 234 | 247 | 150 | 209 | 300 | 483 | 495 |
Labelled Cell Count | 256 | 157 | 206 | 231 | 350 | 428 | 654 | 651 | 424 | 574 | 418 | 498 | 598 | 500 | 647 | 340 | 362 | 248 | 247 | 150 | 209 | 300 | 483 | 495 |
Screen | WT1 | WT2 | WT3 | RAP60 | RAP140 | RAP220 | RAP300 | RAP380 | RAP460 | RAP540 | RAP620 | RAP700 | HU80 | HU120 | HU160 | rpd3Δ_1 | rpd3Δ_2 | rpd3Δ_3 | AF100 | AF140 | AF180 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Mean Cell GFP Intensity (1e-4) | 6.7 | 8.1 | 7.9 | 10.4 | 8.1 | 7.1 | 6.9 | 6.9 | 7.4 | 7.0 | 6.8 | 6.9 | 9.7 | 10.1 | 9.7 | 12.5 | 14.0 | 11.8 | 8.8 | 8.3 | 9.0 |
Std Deviation (1e-4) | 1.2 | 1.7 | 2.7 | 10.6 | 2.8 | 2.7 | 2.3 | 2.5 | 2.6 | 2.5 | 2.5 | 2.3 | 3.3 | 4.3 | 4.2 | 4.5 | 5.9 | 4.7 | 2.7 | 2.0 | 2.2 |
Intensity Change (Log2) | – | – | – | 0.4 | 0.04 | -0.14 | -0.2 | -0.18 | -0.09 | -0.17 | -0.22 | -0.19 | 0.3 | 0.36 | 0.3 | 0.67 | 0.83 | 0.58 | 0.16 | 0.08 | 0.19 |
Localization | RAP60 | RAP140 | RAP220 | RAP300 | RAP380 | RAP460 | RAP540 | RAP620 | RAP700 | HU80 | HU120 | HU160 | rpd3Δ_1 | rpd3Δ_2 | rpd3Δ_3 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Cortical Patches | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Bud | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Bud Neck | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Bud Site | 0 | 0 | 0 | 0 | 0 | 0 | 3.1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Cell Periphery | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Cytoplasm | 0.8 | 0.3 | 1.1 | 0.3 | -1.3 | 0.6 | -1.2 | 1.0 | 0 | 1.4 | 3.1 | 3.6 | 2.5 | 0.6 | 1.3 |
Endoplasmic Reticulum | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Endosome | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Golgi | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Mitochondria | 2.6 | 1.3 | 4.9 | 6.1 | 6.9 | 5.9 | 8.2 | 7.6 | 8.5 | 0 | 0 | 0 | 0 | 0 | 0 |
Nucleus | -3.2 | -2.2 | -4.8 | -5.1 | -6.7 | -6.6 | -6.7 | -7.2 | -7.6 | -1.8 | -3.6 | -4.6 | -3.8 | -3.7 | -3.3 |
Nuclear Periphery | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Nucleolus | 0 | 0 | 4.3 | 4.7 | 5.4 | 5.0 | 5.9 | 5.6 | 6.3 | 0 | 0 | 0 | 0 | 0 | 3.8 |
Peroxisomes | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
SpindlePole | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Vacuole | 2.1 | 2.0 | 0 | 0 | 2.2 | 2.3 | 1.9 | 0 | 2.5 | 0 | 2.1 | 1.6 | 1.9 | 3.4 | 2.1 |
R1 | R2 | R3 | ||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
G1 Pre-START | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | G1 Pre-START | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | G1 Pre-START | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | |
Concentration | 7.8126 | 8.7752 | 9.0732 | 7.888 | 7.2063 | 7.92 | 5.1133 | 7.8795 | 7.8207 | 6.305 | 5.558 | 6.1464 | 4.2592 | 6.2634 | 5.9215 | 5.5035 | 4.892 | 4.9111 |
Actin | 0 | 0 | 0 | 0 | 0.0001 | 0 | 0.0074 | 0.0001 | 0.0106 | 0.0002 | 0.0054 | 0.0003 | 0 | 0 | 0 | 0 | 0 | 0.0002 |
Bud | 0 | 0 | 0 | 0 | 0.0001 | 0 | 0.0007 | 0 | 0.0001 | 0.0002 | 0.0002 | 0.0001 | 0 | 0 | 0 | 0 | 0 | 0 |
Bud Neck | 0 | 0.0001 | 0 | 0 | 0.0007 | 0.0008 | 0.002 | 0.0001 | 0.0006 | 0.0003 | 0.0004 | 0.0009 | 0.0001 | 0.0001 | 0 | 0 | 0.0001 | 0.0005 |
Bud Periphery | 0 | 0.0001 | 0 | 0 | 0.0004 | 0.0001 | 0.0021 | 0.0001 | 0.0002 | 0.0003 | 0.0005 | 0.0002 | 0 | 0 | 0 | 0 | 0 | 0.0001 |
Bud Site | 0 | 0 | 0 | 0 | 0.0001 | 0 | 0.0018 | 0.0002 | 0.007 | 0.0006 | 0.0008 | 0.0001 | 0.0001 | 0 | 0 | 0 | 0 | 0.0001 |
Cell Periphery | 0 | 0.0001 | 0 | 0 | 0.0001 | 0 | 0.0007 | 0.0001 | 0.0001 | 0.0003 | 0.0001 | 0.0001 | 0 | 0 | 0 | 0 | 0 | 0 |
Cytoplasm | 0 | 0.0001 | 0 | 0 | 0.0001 | 0.0001 | 0.0098 | 0.0003 | 0.0008 | 0.0013 | 0.003 | 0.0003 | 0.0003 | 0.0001 | 0 | 0 | 0 | 0.001 |
Cytoplasmic Foci | 0 | 0 | 0 | 0 | 0 | 0 | 0.0195 | 0.0001 | 0.0087 | 0.0049 | 0.0226 | 0.0005 | 0.001 | 0 | 0 | 0 | 0 | 0.0002 |
Eisosomes | 0 | 0 | 0 | 0 | 0 | 0 | 0.0001 | 0 | 0 | 0 | 0.0001 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Endoplasmic Reticulum | 0 | 0 | 0 | 0 | 0.0001 | 0 | 0.0022 | 0.0013 | 0.0003 | 0.0008 | 0.0037 | 0.0002 | 0.0001 | 0.0001 | 0 | 0 | 0 | 0.0004 |
Endosome | 0 | 0 | 0 | 0 | 0.0001 | 0.0001 | 0.0224 | 0.002 | 0.0101 | 0.0174 | 0.0733 | 0.0005 | 0.0004 | 0 | 0 | 0 | 0 | 0.0014 |
Golgi | 0 | 0 | 0 | 0 | 0 | 0 | 0.0045 | 0.0003 | 0.0024 | 0.0021 | 0.0171 | 0.0004 | 0 | 0 | 0 | 0 | 0 | 0.0001 |
Lipid Particles | 0 | 0 | 0 | 0 | 0 | 0 | 0.0107 | 0.0005 | 0.0095 | 0.0146 | 0.0318 | 0.0028 | 0.0006 | 0 | 0 | 0 | 0 | 0.0001 |
Mitochondria | 0.0002 | 0.0003 | 0.0001 | 0.0001 | 0.0009 | 0.0001 | 0.0123 | 0.0006 | 0.0012 | 0.0028 | 0.0768 | 0.0016 | 0.0006 | 0.0001 | 0.0003 | 0.0001 | 0.0001 | 0.0002 |
None | 0 | 0 | 0 | 0 | 0 | 0 | 0.0023 | 0.0001 | 0.0003 | 0.0004 | 0.0015 | 0 | 0.0003 | 0 | 0 | 0 | 0 | 0.0001 |
Nuclear Periphery | 0.0005 | 0.0059 | 0.0011 | 0.0025 | 0.0053 | 0.0007 | 0.013 | 0.0042 | 0.0035 | 0.0057 | 0.0114 | 0.0023 | 0.0007 | 0.0034 | 0.0007 | 0.0012 | 0.0002 | 0.0014 |
Nucleolus | 0.0194 | 0.0189 | 0.0136 | 0.0175 | 0.0518 | 0.0464 | 0.0256 | 0.0221 | 0.0136 | 0.0279 | 0.0427 | 0.0343 | 0.0208 | 0.0064 | 0.0139 | 0.0223 | 0.0354 | 0.0231 |
Nucleus | 0.9795 | 0.973 | 0.9849 | 0.9682 | 0.9381 | 0.9481 | 0.825 | 0.9629 | 0.9172 | 0.8977 | 0.6803 | 0.9517 | 0.9729 | 0.9889 | 0.9849 | 0.9762 | 0.9638 | 0.97 |
Peroxisomes | 0 | 0 | 0 | 0 | 0 | 0 | 0.009 | 0 | 0.0075 | 0.0004 | 0.0062 | 0.0011 | 0 | 0 | 0 | 0 | 0 | 0 |
Punctate Nuclear | 0.0002 | 0.0004 | 0.0001 | 0.0116 | 0.0009 | 0.0031 | 0.0105 | 0.0033 | 0.0049 | 0.0045 | 0.0138 | 0.0005 | 0.0007 | 0 | 0 | 0.0001 | 0.0001 | 0.0005 |
Vacuole | 0.0001 | 0.0005 | 0 | 0 | 0.0007 | 0.0003 | 0.0121 | 0.0011 | 0.0008 | 0.0101 | 0.0045 | 0.0012 | 0.0008 | 0.0005 | 0 | 0 | 0.0001 | 0.0004 |
Vacuole Periphery | 0.0001 | 0.0005 | 0.0001 | 0 | 0.0005 | 0.0001 | 0.0065 | 0.0006 | 0.0004 | 0.0076 | 0.0035 | 0.0008 | 0.0005 | 0.0002 | 0.0001 | 0 | 0 | 0.0001 |
R1 | R2 | |||||||||
---|---|---|---|---|---|---|---|---|---|---|
G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | |
Gene Expression | 77.7857 | 35.1971 | 26.1177 | 34.9418 | 71.5929 | 72.9437 | 21.0488 | 14.9388 | 29.357 | 63.2575 |
Translational Efficiency | 1.6869 | 0.8223 | 0.7588 | 1.3879 | 1.1832 | 1.5037 | 1.1804 | 0.9382 | 1.0303 | 1.1281 |
Dataset | Hit |
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Protein Concentration | ✔ |
Protein Localization | ✘ |
Gene Expression | ✔ |
Translational Efficiency | ✘ |
Temp | Actin Patch (Sac6-tdTomato) | Cortical Patch (Sla1-GFP) | Late Endosome (Snf7-GFP) | Vacuole (Vph1-GFP) |
---|---|---|---|---|
37℃ | ||||
RT |
Gene / Allele | Actin Patch (Sac6-tdTomato) | Cortical Patch (Sla1-GFP) | Late Endosome (Snf7-GFP) | Vacuole (Sac6-tdTomato) |
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Gene | Images |
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Gene | Images |
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