Standard name | |
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Human Ortholog | |
Description | Mitochondrial ribosomal protein of the small subunit; also predicted to be an S-adenosylmethionine-dependent RNA methyltransferase |
ensLOC | DeepLoc | |||||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Localization | WT1 | WT2 | WT3 | RAP60 | RAP140 | RAP220 | RAP300 | RAP380 | RAP460 | RAP540 | RAP620 | RAP700 | HU80 | HU120 | HU160 | rpd3Δ_1 | rpd3Δ_2 | rpd3Δ_3 | WT1 | WT2 | WT3 | AF100 | AF140 | AF180 |
Cortical Patches | 1 | 1 | 3 | 3 | 5 | 0 | 0 | – | 1 | 2 | 0 | 0 | 3 | 13 | 4 | 5 | 3 | 1 | 2 | 2 | 0 | 0 | 4 | 8 |
Bud | 4 | 0 | 0 | 5 | 2 | 5 | 9 | – | 7 | 3 | 9 | 5 | 1 | 1 | 1 | 5 | 6 | 8 | 0 | 0 | 0 | 0 | 0 | 2 |
Bud Neck | 0 | 0 | 0 | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 2 | 0 | 0 | 0 | 1 |
Bud Site | 0 | 0 | 0 | 0 | 0 | 2 | 0 | – | 2 | 3 | 3 | 2 | 0 | 0 | 0 | 0 | 1 | 0 | – | – | – | – | – | – |
Cell Periphery | 3 | 11 | 0 | 10 | 2 | 2 | 4 | – | 3 | 5 | 0 | 6 | 0 | 12 | 18 | 43 | 33 | 16 | 0 | 0 | 0 | 0 | 0 | 0 |
Cytoplasm | 1 | 1 | 3 | 9 | 7 | 6 | 14 | – | 6 | 2 | 4 | 9 | 3 | 10 | 14 | 19 | 17 | 19 | 0 | 0 | 0 | 0 | 2 | 1 |
Endoplasmic Reticulum | 6 | 1 | 2 | 2 | 7 | 2 | 5 | – | 1 | 8 | 3 | 7 | 4 | 18 | 15 | 3 | 9 | 8 | 0 | 1 | 0 | 0 | 0 | 1 |
Endosome | 5 | 2 | 4 | 13 | 24 | 10 | 42 | – | 6 | 15 | 1 | 7 | 1 | 17 | 17 | 8 | 20 | 15 | 4 | 9 | 7 | 7 | 12 | 11 |
Golgi | 0 | 24 | 17 | 29 | 55 | 3 | 3 | – | 3 | 3 | 0 | 4 | 8 | 71 | 100 | 120 | 73 | 37 | 7 | 13 | 3 | 5 | 20 | 28 |
Mitochondria | 180 | 173 | 29 | 158 | 118 | 177 | 276 | – | 253 | 307 | 224 | 293 | 63 | 123 | 108 | 24 | 23 | 18 | 159 | 181 | 67 | 64 | 207 | 248 |
Nucleus | 2 | 4 | 3 | 0 | 0 | 2 | 16 | – | 2 | 6 | 2 | 1 | 3 | 3 | 1 | 6 | 9 | 7 | 1 | 1 | 0 | 0 | 1 | 1 |
Nuclear Periphery | 13 | 3 | 0 | 3 | 2 | 13 | 18 | – | 10 | 23 | 8 | 16 | 0 | 6 | 4 | 3 | 5 | 2 | 2 | 4 | 0 | 0 | 1 | 0 |
Nucleolus | 8 | 4 | 0 | 0 | 3 | 9 | 16 | – | 5 | 4 | 5 | 3 | 0 | 0 | 0 | 3 | 2 | 6 | 0 | 0 | 0 | 0 | 1 | 1 |
Peroxisomes | 2 | 5 | 0 | 5 | 3 | 1 | 6 | – | 1 | 3 | 3 | 6 | 1 | 1 | 8 | 16 | 37 | 18 | 9 | 4 | 6 | 4 | 9 | 9 |
SpindlePole | 1 | 1 | 2 | 2 | 8 | 9 | 20 | – | 13 | 21 | 2 | 12 | 0 | 3 | 5 | 11 | 7 | 10 | 0 | 0 | 0 | 0 | 0 | 2 |
Vac/Vac Membrane | 17 | 47 | 4 | 11 | 27 | 20 | 33 | – | 23 | 29 | 4 | 16 | 4 | 17 | 29 | 33 | 41 | 56 | 1 | 6 | 0 | 3 | 15 | 19 |
Unique Cell Count | 192 | 205 | 51 | 181 | 201 | 216 | 375 | 281 | 354 | 237 | 324 | 75 | 218 | 248 | 250 | 232 | 172 | 191 | 230 | 91 | 92 | 281 | 341 | |
Labelled Cell Count | 243 | 277 | 67 | 250 | 263 | 261 | 462 | 336 | 434 | 268 | 388 | 91 | 295 | 324 | 299 | 286 | 221 | 191 | 230 | 91 | 92 | 281 | 341 |
Screen | WT1 | WT2 | WT3 | RAP60 | RAP140 | RAP220 | RAP300 | RAP380 | RAP460 | RAP540 | RAP620 | RAP700 | HU80 | HU120 | HU160 | rpd3Δ_1 | rpd3Δ_2 | rpd3Δ_3 | AF100 | AF140 | AF180 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Mean Cell GFP Intensity (1e-4) | 6.7 | 7.6 | 7.5 | 7.3 | 7.6 | 6.0 | 6.2 | – | 5.1 | 5.4 | 4.6 | 5.2 | 6.6 | 7.5 | 7.1 | 9.6 | 9.6 | 8.8 | 6.0 | 7.4 | 7.9 |
Std Deviation (1e-4) | 1.3 | 1.1 | 1.3 | 1.3 | 1.5 | 1.2 | 1.5 | – | 1.3 | 1.2 | 1.0 | 1.4 | 1.2 | 1.2 | 1.1 | 2.1 | 2.2 | 2.1 | 0.7 | 1.3 | 1.4 |
Intensity Change (Log2) | – | – | – | -0.04 | 0.01 | -0.32 | -0.28 | – | -0.56 | -0.47 | -0.72 | -0.54 | -0.2 | -0.01 | -0.1 | 0.35 | 0.34 | 0.23 | -0.34 | -0.02 | 0.06 |
Localization | RAP60 | RAP140 | RAP220 | RAP300 | RAP380 | RAP460 | RAP540 | RAP620 | RAP700 | HU80 | HU120 | HU160 | rpd3Δ_1 | rpd3Δ_2 | rpd3Δ_3 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Actin | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – |
Bud | 0 | 0 | 0 | 0 | – | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Bud Neck | 0 | 0 | 0 | 0 | – | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Bud Site | 0 | 0 | 0 | 0 | – | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Cell Periphery | 0 | 0 | 0 | 0 | – | 0 | 0 | – | 0 | 0 | 0 | 0 | 3.2 | 2.9 | 0 |
Cyto | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – |
Endoplasmic Reticulum | 0 | 0 | 0 | 0 | – | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Endosome | 0 | 0.8 | 0 | 0.7 | – | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Golgi | -2.7 | -0.8 | 0 | 0 | – | 0 | 0 | – | 0 | -3.1 | -0.1 | 0.9 | 1.9 | -0.3 | -1.7 |
Mitochondria | 4.9 | 0.2 | 3.8 | 2.5 | – | 6.1 | 5.3 | – | 6.4 | 3.4 | -0.1 | -1.7 | -8.1 | -7.8 | -7.1 |
Nuclear Periphery | 0 | 0 | 0 | 0 | – | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Nuc | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – |
Nucleolus | 0 | 0 | 0 | 0 | – | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Peroxisomes | 0 | 0 | 0 | 0 | – | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 3.1 | 0 |
SpindlePole | 0 | 0 | 0 | 0 | – | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Vac | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – |
Cortical Patches | 0 | 0 | 0 | 0 | – | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Cytoplasm | 0 | 0 | 0 | 0 | – | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 1.1 |
Nucleus | 0 | 0 | 0 | 0 | – | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Vacuole | 0 | 1.1 | 0 | 0 | – | 0 | 0 | – | 0 | 0 | 0 | 0.8 | 1.1 | 1.7 | 3.5 |
R1 | R2 | R3 | ||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
G1 Pre-START | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | G1 Pre-START | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | G1 Pre-START | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | |
Concentration | 1.9044 | 3.0135 | 2.3102 | 3.2014 | 1.9291 | 2.7818 | 4.1332 | 4.3068 | 4.1316 | 3.7802 | 3.7099 | 4.3698 | 2.7792 | 3.7295 | 3.2035 | 2.9987 | 2.5472 | 3.2417 |
Actin | 0.0261 | 0.0074 | 0.0073 | 0.0195 | 0.0022 | 0.0008 | 0.0052 | 0.0009 | 0.0021 | 0.0002 | 0.0185 | 0.0013 | 0.019 | 0.0059 | 0.0233 | 0.0012 | 0.0445 | 0.0011 |
Bud | 0.0002 | 0.0003 | 0.0003 | 0.003 | 0.0001 | 0.0002 | 0.0001 | 0.0001 | 0.0001 | 0 | 0.0002 | 0 | 0.0004 | 0.011 | 0.0014 | 0.0001 | 0.0002 | 0.0001 |
Bud Neck | 0.0008 | 0.0003 | 0.0002 | 0.0009 | 0.0001 | 0 | 0.0002 | 0.0001 | 0 | 0 | 0.0043 | 0 | 0.0003 | 0.0003 | 0.0002 | 0.0003 | 0.0008 | 0.0001 |
Bud Periphery | 0.0007 | 0.0005 | 0.0008 | 0.0058 | 0.0001 | 0.0003 | 0.0002 | 0.0002 | 0.0004 | 0.0001 | 0.0003 | 0.0001 | 0.0009 | 0.006 | 0.0046 | 0.0003 | 0.0004 | 0.0002 |
Bud Site | 0.0015 | 0.0009 | 0.0007 | 0.0266 | 0.0002 | 0.0001 | 0.0002 | 0.0003 | 0.0002 | 0 | 0.0014 | 0.0001 | 0.0009 | 0.0102 | 0.004 | 0.0001 | 0.0002 | 0.0001 |
Cell Periphery | 0.0034 | 0.0002 | 0.0003 | 0.002 | 0 | 0.0001 | 0.0001 | 0.0001 | 0.0001 | 0 | 0.0001 | 0.0001 | 0.0003 | 0.0015 | 0.0005 | 0.0001 | 0.0001 | 0.0001 |
Cytoplasm | 0.0032 | 0.0001 | 0.0003 | 0.0005 | 0 | 0.0003 | 0.0002 | 0.0002 | 0.0001 | 0 | 0.0001 | 0 | 0.0004 | 0.0007 | 0.0007 | 0 | 0.0001 | 0.0001 |
Cytoplasmic Foci | 0.03 | 0.0068 | 0.0143 | 0.0026 | 0.0115 | 0.0019 | 0.0056 | 0.0044 | 0.0027 | 0.0002 | 0.002 | 0.0017 | 0.0099 | 0.0068 | 0.0048 | 0.0051 | 0.0048 | 0.0013 |
Eisosomes | 0.0095 | 0.0002 | 0.0004 | 0.0008 | 0.0001 | 0.0001 | 0.0002 | 0.0001 | 0.0002 | 0.0001 | 0.0002 | 0.0001 | 0.0004 | 0.0004 | 0.0005 | 0.0002 | 0.0005 | 0.0001 |
Endoplasmic Reticulum | 0.0099 | 0.0001 | 0.0002 | 0.0002 | 0 | 0.0001 | 0.0002 | 0.0002 | 0.0001 | 0 | 0.0001 | 0.0001 | 0.0009 | 0.0002 | 0.0009 | 0 | 0.0009 | 0.0003 |
Endosome | 0.0132 | 0.0195 | 0.017 | 0.0038 | 0.0039 | 0.0143 | 0.0193 | 0.0146 | 0.0095 | 0.0009 | 0.0043 | 0.0083 | 0.0263 | 0.0331 | 0.0139 | 0.0064 | 0.0267 | 0.0153 |
Golgi | 0.0096 | 0.0294 | 0.0203 | 0.0047 | 0.0103 | 0.0086 | 0.025 | 0.035 | 0.0207 | 0.0037 | 0.0166 | 0.0187 | 0.0435 | 0.0407 | 0.0246 | 0.0115 | 0.0361 | 0.021 |
Lipid Particles | 0.0388 | 0.0264 | 0.0286 | 0.0029 | 0.0111 | 0.0023 | 0.0165 | 0.0062 | 0.0043 | 0.0003 | 0.0015 | 0.0027 | 0.037 | 0.0264 | 0.0055 | 0.0042 | 0.0142 | 0.0122 |
Mitochondria | 0.7325 | 0.8311 | 0.8703 | 0.9184 | 0.8746 | 0.9566 | 0.8951 | 0.9197 | 0.9465 | 0.9931 | 0.9458 | 0.9487 | 0.8055 | 0.8319 | 0.8882 | 0.9545 | 0.858 | 0.9371 |
None | 0.0089 | 0.0001 | 0.0009 | 0.0002 | 0 | 0.0001 | 0.0006 | 0.0001 | 0.0001 | 0 | 0.0001 | 0 | 0.0008 | 0.0001 | 0.0016 | 0 | 0.0003 | 0 |
Nuclear Periphery | 0.001 | 0.0001 | 0.0002 | 0.0001 | 0 | 0.0001 | 0.001 | 0.0002 | 0.0001 | 0 | 0.0001 | 0.0001 | 0.0012 | 0.0002 | 0.0009 | 0 | 0.0031 | 0.0006 |
Nucleolus | 0.0008 | 0.0003 | 0.0004 | 0.0005 | 0 | 0 | 0.0003 | 0 | 0.0001 | 0 | 0.0001 | 0.0001 | 0.0003 | 0.0004 | 0.0001 | 0.0001 | 0.0001 | 0.0001 |
Nucleus | 0.0005 | 0.0001 | 0.0002 | 0.0004 | 0 | 0.0001 | 0.0002 | 0.0001 | 0.0001 | 0 | 0.0001 | 0.0001 | 0.0003 | 0.0005 | 0.0002 | 0 | 0.0002 | 0.0002 |
Peroxisomes | 0.0943 | 0.07 | 0.0326 | 0.0037 | 0.0847 | 0.0113 | 0.0245 | 0.0111 | 0.0099 | 0.001 | 0.003 | 0.0159 | 0.0313 | 0.0131 | 0.0167 | 0.0147 | 0.004 | 0.0043 |
Punctate Nuclear | 0.005 | 0 | 0.0002 | 0.0001 | 0.0003 | 0 | 0.0009 | 0 | 0 | 0 | 0.0006 | 0 | 0.0123 | 0.0001 | 0.0002 | 0 | 0.0007 | 0 |
Vacuole | 0.0069 | 0.0024 | 0.0021 | 0.0025 | 0.0002 | 0.001 | 0.0018 | 0.0017 | 0.001 | 0.0001 | 0.0002 | 0.0005 | 0.003 | 0.0066 | 0.0028 | 0.0004 | 0.0014 | 0.0028 |
Vacuole Periphery | 0.0032 | 0.0037 | 0.0024 | 0.0007 | 0.0006 | 0.0017 | 0.0027 | 0.0047 | 0.0019 | 0.0003 | 0.0004 | 0.0013 | 0.0051 | 0.0038 | 0.0044 | 0.0006 | 0.0027 | 0.0031 |
R1 | R2 | |||||||||
---|---|---|---|---|---|---|---|---|---|---|
G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | |
Gene Expression | 11.6948 | 8.3635 | 10.4728 | 14.1316 | 12.5093 | 12.2727 | 14.2701 | 16.5874 | 17.2238 | 16.5076 |
Translational Efficiency | 0.8484 | 1.1536 | 0.7391 | 0.7644 | 0.6774 | 0.8625 | 0.8507 | 0.6904 | 0.6831 | 0.7019 |
Dataset | Hit |
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Protein Concentration | ✘ |
Protein Localization | ✔ |
Gene Expression | ✔ |
Translational Efficiency | ✘ |
Temp | Actin Patch (Sac6-tdTomato) | Cortical Patch (Sla1-GFP) | Late Endosome (Snf7-GFP) | Vacuole (Vph1-GFP) |
---|---|---|---|---|
37℃ | ||||
RT |
Gene / Allele | Actin Patch (Sac6-tdTomato) | Cortical Patch (Sla1-GFP) | Late Endosome (Snf7-GFP) | Vacuole (Sac6-tdTomato) |
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Gene | Images |
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Gene | Images |
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