Standard name | |
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Human Ortholog | |
Description | Component of the RSC chromatin remodeling complex; found in close proximity to nucleosomal DNA; displaced from the surface of nucleosomal DNA after chromatin remodeling; acetylated (K25) by Gcn5p, altering replication stress tolerance; contains tandem bromodomains that recognize histone H3 acetylated on K14 (H3K14ac) by Gcn5p |
ensLOC | DeepLoc | |||||||||||||||||||||||
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Localization | WT1 | WT2 | WT3 | RAP60 | RAP140 | RAP220 | RAP300 | RAP380 | RAP460 | RAP540 | RAP620 | RAP700 | HU80 | HU120 | HU160 | rpd3Δ_1 | rpd3Δ_2 | rpd3Δ_3 | WT1 | WT2 | WT3 | AF100 | AF140 | AF180 |
Cortical Patches | – | 0 | – | – | 0 | – | 0 | 0 | – | 0 | – | – | 0 | 0 | 0 | – | – | – | – | 1 | 0 | 0 | 1 | 0 |
Bud | – | 0 | – | – | 0 | – | 0 | 0 | – | 0 | – | – | 0 | 0 | 0 | – | – | – | – | 0 | 0 | 0 | 1 | 2 |
Bud Neck | – | 0 | – | – | 0 | – | 0 | 0 | – | 0 | – | – | 0 | 0 | 0 | – | – | – | – | 0 | 0 | 0 | 0 | 3 |
Bud Site | – | 0 | – | – | 0 | – | 0 | 0 | – | 0 | – | – | 0 | 0 | 0 | – | – | – | – | – | – | – | – | – |
Cell Periphery | – | 0 | – | – | 0 | – | 0 | 0 | – | 0 | – | – | 0 | 0 | 0 | – | – | – | – | 0 | 0 | 0 | 0 | 0 |
Cytoplasm | – | 3 | – | – | 3 | – | 3 | 3 | – | 4 | – | – | 5 | 7 | 15 | – | – | – | – | 0 | 0 | 0 | 1 | 2 |
Endoplasmic Reticulum | – | 0 | – | – | 0 | – | 0 | 0 | – | 0 | – | – | 0 | 0 | 0 | – | – | – | – | 0 | 0 | 0 | 0 | 0 |
Endosome | – | 0 | – | – | 0 | – | 0 | 0 | – | 1 | – | – | 0 | 1 | 3 | – | – | – | – | 1 | 0 | 0 | 1 | 2 |
Golgi | – | 0 | – | – | 0 | – | 0 | 0 | – | 0 | – | – | 0 | 0 | 1 | – | – | – | – | 0 | 0 | 0 | 0 | 0 |
Mitochondria | – | 1 | – | – | 0 | – | 1 | 0 | – | 0 | – | – | 0 | 0 | 0 | – | – | – | – | 0 | 0 | 0 | 0 | 1 |
Nucleus | – | 71 | – | – | 13 | – | 13 | 12 | – | 12 | – | – | 18 | 35 | 47 | – | – | – | – | 91 | 7 | 46 | 118 | 102 |
Nuclear Periphery | – | 0 | – | – | 0 | – | 0 | 0 | – | 0 | – | – | 0 | 1 | 1 | – | – | – | – | 0 | 0 | 0 | 0 | 0 |
Nucleolus | – | 10 | – | – | 2 | – | 3 | 1 | – | 3 | – | – | 2 | 4 | 10 | – | – | – | – | 9 | 0 | 3 | 5 | 9 |
Peroxisomes | – | 0 | – | – | 0 | – | 0 | 0 | – | 0 | – | – | 0 | 0 | 1 | – | – | – | – | 0 | 0 | 0 | 0 | 0 |
SpindlePole | – | 0 | – | – | 0 | – | 0 | 0 | – | 1 | – | – | 1 | 0 | 2 | – | – | – | – | 0 | 0 | 0 | 2 | 2 |
Vac/Vac Membrane | – | 3 | – | – | 0 | – | 1 | 0 | – | 1 | – | – | 1 | 0 | 2 | – | – | – | – | 4 | 0 | 0 | 3 | 10 |
Unique Cell Count | 82 | 17 | 18 | 16 | 19 | 25 | 44 | 74 | 111 | 9 | 52 | 139 | 142 | |||||||||||
Labelled Cell Count | 88 | 18 | 21 | 16 | 22 | 27 | 48 | 82 | 111 | 9 | 52 | 139 | 142 |
Screen | WT1 | WT2 | WT3 | RAP60 | RAP140 | RAP220 | RAP300 | RAP380 | RAP460 | RAP540 | RAP620 | RAP700 | HU80 | HU120 | HU160 | rpd3Δ_1 | rpd3Δ_2 | rpd3Δ_3 | AF100 | AF140 | AF180 |
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Mean Cell GFP Intensity (1e-4) | – | 8.4 | – | – | 10.3 | – | 8.4 | 9.4 | – | 9.9 | – | – | 9.0 | 9.1 | 8.4 | – | – | – | – | 8.7 | 8.7 |
Std Deviation (1e-4) | – | 1.6 | – | – | 2.1 | – | 2.5 | 2.2 | – | 2.5 | – | – | 2.6 | 2.2 | 1.9 | – | – | – | – | 1.6 | 2.0 |
Intensity Change (Log2) | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – |
Localization | RAP60 | RAP140 | RAP220 | RAP300 | RAP380 | RAP460 | RAP540 | RAP620 | RAP700 | HU80 | HU120 | HU160 | rpd3Δ_1 | rpd3Δ_2 | rpd3Δ_3 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Actin | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – |
Bud | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – |
Bud Neck | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – |
Bud Site | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – |
Cell Periphery | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – |
Cyto | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – |
Endoplasmic Reticulum | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – |
Endosome | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – |
Golgi | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – |
Mitochondria | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – |
Nuclear Periphery | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – |
Nuc | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – |
Nucleolus | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – |
Peroxisomes | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – |
SpindlePole | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – |
Vac | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – |
Cortical Patches | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – |
Cytoplasm | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – |
Nucleus | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – |
Vacuole | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – |
R1 | R2 | R3 | ||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
G1 Pre-START | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | G1 Pre-START | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | G1 Pre-START | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | |
Concentration | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – |
Actin | 0.0335 | 0 | 0.0099 | 0.0604 | 0.0224 | 0.005 | 0.71 | 0.0005 | 0.0006 | 0.0008 | 0.0003 | 0 | – | – | – | – | – | – |
Bud | 0.0017 | 0 | 0.003 | 0.0002 | 0.002 | 0.0004 | 0.0022 | 0.0003 | 0.0002 | 0.0001 | 0.0001 | 0.0001 | – | – | – | – | – | – |
Bud Neck | 0.0054 | 0.0001 | 0.0005 | 0.0001 | 0.0007 | 0.0014 | 0.0019 | 0.0001 | 0.0005 | 0.0002 | 0.0003 | 0.0015 | – | – | – | – | – | – |
Bud Periphery | 0.0012 | 0 | 0.0023 | 0.0002 | 0.0063 | 0.0007 | 0.0025 | 0.0002 | 0.0002 | 0.0001 | 0.0001 | 0.0002 | – | – | – | – | – | – |
Bud Site | 0.1077 | 0.0001 | 0.0305 | 0.0003 | 0.002 | 0.0003 | 0.005 | 0.0064 | 0.0164 | 0.0001 | 0.0001 | 0.0002 | – | – | – | – | – | – |
Cell Periphery | 0.001 | 0 | 0.0004 | 0 | 0.0012 | 0.0001 | 0.0005 | 0 | 0 | 0 | 0 | 0 | – | – | – | – | – | – |
Cytoplasm | 0.0213 | 0.0002 | 0.0038 | 0.0006 | 0.0029 | 0.0026 | 0.0014 | 0.0005 | 0.0014 | 0.0037 | 0.0005 | 0 | – | – | – | – | – | – |
Cytoplasmic Foci | 0.1842 | 0 | 0.0023 | 0.0046 | 0.0511 | 0.0035 | 0.0151 | 0.0014 | 0.0015 | 0.0003 | 0.0004 | 0 | – | – | – | – | – | – |
Eisosomes | 0.0002 | 0 | 0 | 0.0002 | 0.0014 | 0 | 0.0031 | 0 | 0 | 0 | 0 | 0 | – | – | – | – | – | – |
Endoplasmic Reticulum | 0.0031 | 0 | 0.0003 | 0.0023 | 0.008 | 0.0127 | 0.0018 | 0.0001 | 0.0001 | 0.0023 | 0.001 | 0 | – | – | – | – | – | – |
Endosome | 0.0937 | 0 | 0.0013 | 0.0081 | 0.0888 | 0.0806 | 0.0311 | 0.0045 | 0.0062 | 0.0009 | 0.0109 | 0 | – | – | – | – | – | – |
Golgi | 0.0453 | 0 | 0.002 | 0.0097 | 0.1819 | 0.028 | 0.1483 | 0.0021 | 0.0038 | 0.0001 | 0.0005 | 0 | – | – | – | – | – | – |
Lipid Particles | 0.0793 | 0 | 0.0002 | 0.012 | 0.144 | 0.0066 | 0.0057 | 0.0001 | 0.0198 | 0.0004 | 0.0016 | 0 | – | – | – | – | – | – |
Mitochondria | 0.0055 | 0.0001 | 0.0013 | 0.055 | 0.4524 | 0.0131 | 0.0606 | 0.0014 | 0.0081 | 0.0019 | 0.0024 | 0.0001 | – | – | – | – | – | – |
None | 0.004 | 0 | 0.0002 | 0.0004 | 0.0017 | 0.0002 | 0.0008 | 0.0001 | 0.0001 | 0.0002 | 0.0004 | 0 | – | – | – | – | – | – |
Nuclear Periphery | 0.0029 | 0.0006 | 0.0013 | 0.0013 | 0.0032 | 0.0056 | 0.0005 | 0.0007 | 0.0141 | 0.0643 | 0.1184 | 0.0001 | – | – | – | – | – | – |
Nucleolus | 0.0321 | 0.0192 | 0.0247 | 0.0105 | 0.0009 | 0.2015 | 0.0001 | 0.0188 | 0.0215 | 0.0906 | 0.3229 | 0.2309 | – | – | – | – | – | – |
Nucleus | 0.2181 | 0.979 | 0.9131 | 0.8306 | 0.0011 | 0.6309 | 0.0001 | 0.9621 | 0.9009 | 0.8291 | 0.5254 | 0.7661 | – | – | – | – | – | – |
Peroxisomes | 0.1398 | 0 | 0.0003 | 0.0025 | 0.0183 | 0.0003 | 0.0075 | 0.0001 | 0.0018 | 0.0001 | 0.0001 | 0 | – | – | – | – | – | – |
Punctate Nuclear | 0.0116 | 0.0006 | 0.0022 | 0.0006 | 0.001 | 0.0006 | 0.0003 | 0.0003 | 0.0018 | 0.0028 | 0.0069 | 0.0006 | – | – | – | – | – | – |
Vacuole | 0.0071 | 0 | 0.0005 | 0.0001 | 0.0034 | 0.0029 | 0.0005 | 0.0003 | 0.0004 | 0.0004 | 0.0021 | 0.0001 | – | – | – | – | – | – |
Vacuole Periphery | 0.0012 | 0 | 0.0001 | 0.0002 | 0.0052 | 0.0029 | 0.0009 | 0.0001 | 0.0006 | 0.0018 | 0.0055 | 0 | – | – | – | – | – | – |
R1 | R2 | |||||||||
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G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | |
Gene Expression | 18.5076 | 22.0595 | 10.523 | 23.8854 | 19.4252 | 17.6165 | 26.1545 | 21.5056 | 19.9257 | 28.4566 |
Translational Efficiency | 1.5766 | 1.6671 | 2.3178 | 0.9425 | 1.6341 | 1.4388 | 1.2997 | 1.1204 | 1.2898 | 1.2712 |
Dataset | Hit |
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Protein Concentration | – |
Protein Localization | ✘ |
Gene Expression | ✘ |
Translational Efficiency | ✘ |
Temp | Actin Patch (Sac6-tdTomato) | Cortical Patch (Sla1-GFP) | Late Endosome (Snf7-GFP) | Vacuole (Vph1-GFP) |
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37℃ | ||||
RT |
Gene / Allele | Actin Patch (Sac6-tdTomato) | Cortical Patch (Sla1-GFP) | Late Endosome (Snf7-GFP) | Vacuole (Sac6-tdTomato) |
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Gene | Images |
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Gene | Images |
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