Standard name
Human Ortholog
Description Component of the RSC chromatin remodeling complex; found in close proximity to nucleosomal DNA; displaced from the surface of nucleosomal DNA after chromatin remodeling; acetylated (K25) by Gcn5p, altering replication stress tolerance; contains tandem bromodomains that recognize histone H3 acetylated on K14 (H3K14ac) by Gcn5p

Micrographs

ensLOC DeepLoc
Localization WT1 WT2 WT3 RAP60 RAP140 RAP220 RAP300 RAP380 RAP460 RAP540 RAP620 RAP700 HU80 HU120 HU160 rpd3Δ_1 rpd3Δ_2 rpd3Δ_3 WT1 WT2 WT3 AF100 AF140 AF180
Cortical Patches 0 0 0 0 0 0 0 0 0 0 0 0 0
Bud 0 0 0 0 0 0 0 0 0 0 0 0 0
Bud Neck 0 0 0 0 0 0 0 0 0 0 0 0 0
Bud Site 0 0 0 0 0 0 0 0
Cell Periphery 0 0 0 0 0 0 0 0 0 0 0 0 0
Cytoplasm 0 0.18 0.17 0.19 0.21 0.2 0.16 0.2 0 0 0 0 0
Endoplasmic Reticulum 0 0 0 0 0 0 0 0 0 0 0 0 0
Endosome 0 0 0 0 0.05 0 0 0 0 0 0 0 0
Golgi 0 0 0 0 0 0 0 0 0 0 0 0 0
Mitochondria 0 0 0.06 0 0 0 0 0 0 0 0 0 0
Nucleus 0.87 0.76 0.72 0.75 0.63 0.72 0.8 0.64 0.83 0.79 0.89 0.85 0.73
Nuclear Periphery 0 0 0 0 0 0 0 0 0 0 0 0 0
Nucleolus 0.12 0.12 0.17 0.06 0.16 0.08 0.09 0.14 0.08 0.05 0.07 0 0.07
Peroxisomes 0 0 0 0 0 0 0 0 0 0 0 0 0
SpindlePole 0 0 0 0 0.05 0 0 0 0 0 0 0 0
Vac/Vac Membrane 0 0 0.06 0 0.05 0 0 0 0 0 0 0 0.07
ensLOC DeepLoc
Localization WT1 WT2 WT3 RAP60 RAP140 RAP220 RAP300 RAP380 RAP460 RAP540 RAP620 RAP700 HU80 HU120 HU160 rpd3Δ_1 rpd3Δ_2 rpd3Δ_3 WT1 WT2 WT3 AF100 AF140 AF180
Cortical Patches 0 0 0 0 0 0 0 0 1 0 0 1 0
Bud 0 0 0 0 0 0 0 0 0 0 0 1 2
Bud Neck 0 0 0 0 0 0 0 0 0 0 0 0 3
Bud Site 0 0 0 0 0 0 0 0
Cell Periphery 0 0 0 0 0 0 0 0 0 0 0 0 0
Cytoplasm 3 3 3 3 4 5 7 15 0 0 0 1 2
Endoplasmic Reticulum 0 0 0 0 0 0 0 0 0 0 0 0 0
Endosome 0 0 0 0 1 0 1 3 1 0 0 1 2
Golgi 0 0 0 0 0 0 0 1 0 0 0 0 0
Mitochondria 1 0 1 0 0 0 0 0 0 0 0 0 1
Nucleus 71 13 13 12 12 18 35 47 91 7 46 118 102
Nuclear Periphery 0 0 0 0 0 0 1 1 0 0 0 0 0
Nucleolus 10 2 3 1 3 2 4 10 9 0 3 5 9
Peroxisomes 0 0 0 0 0 0 0 1 0 0 0 0 0
SpindlePole 0 0 0 0 1 1 0 2 0 0 0 2 2
Vac/Vac Membrane 3 0 1 0 1 1 0 2 4 0 0 3 10
Unique Cell Count 82 17 18 16 19 25 44 74 111 9 52 139 142
Labelled Cell Count 88 18 21 16 22 27 48 82 111 9 52 139 142


Nucleus

(Huh et al. Nature 2003 425:686)
Screen WT1 WT2 WT3 RAP60 RAP140 RAP220 RAP300 RAP380 RAP460 RAP540 RAP620 RAP700 HU80 HU120 HU160 rpd3Δ_1 rpd3Δ_2 rpd3Δ_3 AF100 AF140 AF180
Mean Cell GFP Intensity (1e-4) 8.4 10.3 8.4 9.4 9.9 9.0 9.1 8.4 8.7 8.7
Std Deviation (1e-4) 1.6 2.1 2.5 2.2 2.5 2.6 2.2 1.9 1.6 2.0
Intensity Change (Log2)


Localization RAP60 RAP140 RAP220 RAP300 RAP380 RAP460 RAP540 RAP620 RAP700 HU80 HU120 HU160 rpd3Δ_1 rpd3Δ_2 rpd3Δ_3
Actin
Bud
Bud Neck
Bud Site
Cell Periphery
Cyto
Endoplasmic Reticulum
Endosome
Golgi
Mitochondria
Nuclear Periphery
Nuc
Nucleolus
Peroxisomes
SpindlePole
Vac
Cortical Patches
Cytoplasm
Nucleus
Vacuole

Images

Circle plot not available

Protein Concentration and Protein Localization Data

R1 R2 R3
G1 Pre-START G1 Post-START S/G2 Metaphase Anaphase Telophase G1 Pre-START G1 Post-START S/G2 Metaphase Anaphase Telophase G1 Pre-START G1 Post-START S/G2 Metaphase Anaphase Telophase
Concentration
Actin 0.0335 0 0.0099 0.0604 0.0224 0.005 0.71 0.0005 0.0006 0.0008 0.0003 0
Bud 0.0017 0 0.003 0.0002 0.002 0.0004 0.0022 0.0003 0.0002 0.0001 0.0001 0.0001
Bud Neck 0.0054 0.0001 0.0005 0.0001 0.0007 0.0014 0.0019 0.0001 0.0005 0.0002 0.0003 0.0015
Bud Periphery 0.0012 0 0.0023 0.0002 0.0063 0.0007 0.0025 0.0002 0.0002 0.0001 0.0001 0.0002
Bud Site 0.1077 0.0001 0.0305 0.0003 0.002 0.0003 0.005 0.0064 0.0164 0.0001 0.0001 0.0002
Cell Periphery 0.001 0 0.0004 0 0.0012 0.0001 0.0005 0 0 0 0 0
Cytoplasm 0.0213 0.0002 0.0038 0.0006 0.0029 0.0026 0.0014 0.0005 0.0014 0.0037 0.0005 0
Cytoplasmic Foci 0.1842 0 0.0023 0.0046 0.0511 0.0035 0.0151 0.0014 0.0015 0.0003 0.0004 0
Eisosomes 0.0002 0 0 0.0002 0.0014 0 0.0031 0 0 0 0 0
Endoplasmic Reticulum 0.0031 0 0.0003 0.0023 0.008 0.0127 0.0018 0.0001 0.0001 0.0023 0.001 0
Endosome 0.0937 0 0.0013 0.0081 0.0888 0.0806 0.0311 0.0045 0.0062 0.0009 0.0109 0
Golgi 0.0453 0 0.002 0.0097 0.1819 0.028 0.1483 0.0021 0.0038 0.0001 0.0005 0
Lipid Particles 0.0793 0 0.0002 0.012 0.144 0.0066 0.0057 0.0001 0.0198 0.0004 0.0016 0
Mitochondria 0.0055 0.0001 0.0013 0.055 0.4524 0.0131 0.0606 0.0014 0.0081 0.0019 0.0024 0.0001
None 0.004 0 0.0002 0.0004 0.0017 0.0002 0.0008 0.0001 0.0001 0.0002 0.0004 0
Nuclear Periphery 0.0029 0.0006 0.0013 0.0013 0.0032 0.0056 0.0005 0.0007 0.0141 0.0643 0.1184 0.0001
Nucleolus 0.0321 0.0192 0.0247 0.0105 0.0009 0.2015 0.0001 0.0188 0.0215 0.0906 0.3229 0.2309
Nucleus 0.2181 0.979 0.9131 0.8306 0.0011 0.6309 0.0001 0.9621 0.9009 0.8291 0.5254 0.7661
Peroxisomes 0.1398 0 0.0003 0.0025 0.0183 0.0003 0.0075 0.0001 0.0018 0.0001 0.0001 0
Punctate Nuclear 0.0116 0.0006 0.0022 0.0006 0.001 0.0006 0.0003 0.0003 0.0018 0.0028 0.0069 0.0006
Vacuole 0.0071 0 0.0005 0.0001 0.0034 0.0029 0.0005 0.0003 0.0004 0.0004 0.0021 0.0001
Vacuole Periphery 0.0012 0 0.0001 0.0002 0.0052 0.0029 0.0009 0.0001 0.0006 0.0018 0.0055 0

Sequencing Data

R1 R2
G1 Post-START S/G2 Metaphase Anaphase Telophase G1 Post-START S/G2 Metaphase Anaphase Telophase
Gene Expression 18.5076 22.0595 10.523 23.8854 19.4252 17.6165 26.1545 21.5056 19.9257 28.4566
Translational Efficiency 1.5766 1.6671 2.3178 0.9425 1.6341 1.4388 1.2997 1.1204 1.2898 1.2712

Hit Data

Dataset Hit
Protein Concentration
Protein Localization
Gene Expression
Translational Efficiency

No result is found for the queried gene(s). Please try another query.


Endocytosis
Temp Actin Patch (Sac6-tdTomato) Cortical Patch (Sla1-GFP) Late Endosome (Snf7-GFP) Vacuole (Vph1-GFP)
37℃
RT
Cell Cycle Omics

CYCLoPs (Rsc4-GFP)
Gene / Allele Actin Patch (Sac6-tdTomato) Cortical Patch (Sla1-GFP) Late Endosome (Snf7-GFP) Vacuole (Sac6-tdTomato)
Gene Images
Gene Images
Images are not yet available
Images are not yet available