Standard name | |
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Human Ortholog | |
Description | Class E protein of the vacuolar protein-sorting (Vps) pathway; binds Vps4p and directs it to dissociate ESCRT-III complexes; forms a functional and physical complex with Ist1p; human ortholog may be altered in breast tumors |
ensLOC | DeepLoc | |||||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Localization | WT1 | WT2 | WT3 | RAP60 | RAP140 | RAP220 | RAP300 | RAP380 | RAP460 | RAP540 | RAP620 | RAP700 | HU80 | HU120 | HU160 | rpd3Δ_1 | rpd3Δ_2 | rpd3Δ_3 | WT1 | WT2 | WT3 | AF100 | AF140 | AF180 |
Cortical Patches | 0 | 1 | 0 | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 2 | 0 | 0 | 0 | 0 |
Bud | 0 | 2 | 0 | 0 | 0 | 0 | 0 | – | 2 | 2 | 4 | 3 | 0 | 0 | 0 | 2 | 0 | 2 | 2 | 3 | 1 | 0 | 8 | 4 |
Bud Neck | 0 | 0 | 1 | 0 | 1 | 0 | 0 | – | 0 | 0 | 3 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 1 | 3 | 2 |
Bud Site | 0 | 0 | 0 | 0 | 0 | 6 | 0 | – | 6 | 7 | 12 | 9 | 0 | 0 | 0 | 1 | 0 | 0 | – | – | – | – | – | – |
Cell Periphery | 0 | 0 | 0 | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 2 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 |
Cytoplasm | 14 | 39 | 5 | 15 | 17 | 23 | 45 | – | 27 | 33 | 32 | 19 | 33 | 45 | 75 | 71 | 60 | 72 | 3 | 20 | 2 | 2 | 3 | 8 |
Endoplasmic Reticulum | 1 | 6 | 1 | 0 | 0 | 0 | 1 | – | 0 | 0 | 0 | 0 | 0 | 1 | 1 | 22 | 18 | 12 | 0 | 0 | 0 | 0 | 2 | 2 |
Endosome | 3 | 4 | 1 | 1 | 1 | 0 | 5 | – | 1 | 1 | 2 | 0 | 3 | 2 | 3 | 10 | 12 | 6 | 8 | 22 | 2 | 3 | 8 | 14 |
Golgi | 0 | 0 | 0 | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 1 | 2 | 0 | 0 | 5 | 1 | 0 | 1 | 0 | 0 | 0 | 2 |
Mitochondria | 40 | 62 | 5 | 17 | 6 | 68 | 40 | – | 123 | 101 | 126 | 97 | 1 | 1 | 0 | 10 | 15 | 16 | 3 | 9 | 1 | 2 | 6 | 8 |
Nucleus | 360 | 267 | 100 | 76 | 90 | 93 | 155 | – | 174 | 150 | 164 | 154 | 155 | 187 | 230 | 385 | 347 | 313 | 355 | 261 | 96 | 84 | 182 | 139 |
Nuclear Periphery | 0 | 0 | 0 | 1 | 0 | 0 | 0 | – | 1 | 4 | 0 | 1 | 0 | 0 | 2 | 1 | 2 | 3 | 0 | 0 | 1 | 1 | 0 | 4 |
Nucleolus | 2 | 0 | 0 | 1 | 1 | 2 | 2 | – | 2 | 1 | 1 | 2 | 0 | 1 | 0 | 0 | 0 | 0 | 3 | 11 | 1 | 4 | 12 | 7 |
Peroxisomes | 1 | 0 | 0 | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
SpindlePole | 0 | 3 | 2 | 0 | 1 | 0 | 6 | – | 1 | 5 | 1 | 2 | 1 | 1 | 0 | 1 | 0 | 5 | 7 | 10 | 1 | 2 | 13 | 6 |
Vac/Vac Membrane | 11 | 36 | 4 | 7 | 12 | 8 | 18 | – | 11 | 7 | 8 | 8 | 7 | 6 | 15 | 54 | 50 | 37 | 30 | 53 | 17 | 26 | 70 | 67 |
Unique Cell Count | 398 | 368 | 109 | 105 | 126 | 151 | 242 | 263 | 231 | 253 | 215 | 197 | 241 | 320 | 508 | 470 | 429 | 421 | 405 | 132 | 132 | 315 | 272 | |
Labelled Cell Count | 432 | 420 | 119 | 118 | 129 | 200 | 272 | 348 | 311 | 353 | 297 | 201 | 247 | 326 | 559 | 510 | 468 | 421 | 405 | 132 | 132 | 315 | 272 |
Screen | WT1 | WT2 | WT3 | RAP60 | RAP140 | RAP220 | RAP300 | RAP380 | RAP460 | RAP540 | RAP620 | RAP700 | HU80 | HU120 | HU160 | rpd3Δ_1 | rpd3Δ_2 | rpd3Δ_3 | AF100 | AF140 | AF180 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Mean Cell GFP Intensity (1e-4) | 4.7 | 4.6 | 5.0 | 5.2 | 5.8 | 3.9 | 5.0 | – | 4.2 | 4.7 | 4.4 | 4.4 | 6.1 | 6.3 | 6.2 | 6.6 | 7.4 | 6.5 | 5.3 | 5.3 | 5.9 |
Std Deviation (1e-4) | 0.7 | 0.9 | 0.7 | 1.7 | 1.5 | 1.1 | 2.0 | – | 1.1 | 1.8 | 1.4 | 1.3 | 1.6 | 2.2 | 1.8 | 1.4 | 1.5 | 1.5 | 2.0 | 1.6 | 2.0 |
Intensity Change (Log2) | – | – | – | 0.05 | 0.22 | -0.37 | 0.0 | – | -0.24 | -0.1 | -0.18 | -0.18 | 0.28 | 0.33 | 0.31 | 0.4 | 0.56 | 0.38 | 0.08 | 0.1 | 0.25 |
Localization | RAP60 | RAP140 | RAP220 | RAP300 | RAP380 | RAP460 | RAP540 | RAP620 | RAP700 | HU80 | HU120 | HU160 | rpd3Δ_1 | rpd3Δ_2 | rpd3Δ_3 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Actin | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – |
Bud | – | – | – | – | – | – | – | – | – | – | – | – | 0 | 0 | 0 |
Bud Neck | – | – | – | – | – | – | – | – | – | – | – | – | 0 | 0 | 0 |
Bud Site | – | – | – | – | – | – | – | – | – | – | – | – | 0 | 0 | 0 |
Cell Periphery | – | – | – | – | – | – | – | – | – | – | – | – | 0 | 0 | 0 |
Cyto | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – |
Endoplasmic Reticulum | – | – | – | – | – | – | – | – | – | – | – | – | 0 | 0 | 0 |
Endosome | – | – | – | – | – | – | – | – | – | – | – | – | 0 | 0 | 0 |
Golgi | – | – | – | – | – | – | – | – | – | – | – | – | 0 | 0 | 0 |
Mitochondria | – | – | – | – | – | – | – | – | – | – | – | – | 0 | 0 | 0 |
Nuclear Periphery | – | – | – | – | – | – | – | – | – | – | – | – | 0 | 0 | 0 |
Nuc | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – |
Nucleolus | – | – | – | – | – | – | – | – | – | – | – | – | 0 | 0 | 0 |
Peroxisomes | – | – | – | – | – | – | – | – | – | – | – | – | 0 | 0 | 0 |
SpindlePole | – | – | – | – | – | – | – | – | – | – | – | – | 0 | 0 | 0 |
Vac | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – |
Cortical Patches | – | – | – | – | – | – | – | – | – | – | – | – | 0 | 0 | 0 |
Cytoplasm | – | – | – | – | – | – | – | – | – | – | – | – | 0 | 0 | 0 |
Nucleus | – | – | – | – | – | – | – | – | – | – | – | – | 0 | 0 | 0 |
Vacuole | – | – | – | – | – | – | – | – | – | – | – | – | 2.3 | 2.3 | 1.7 |
R1 | R2 | R3 | ||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
G1 Pre-START | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | G1 Pre-START | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | G1 Pre-START | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | |
Concentration | 0.1218 | 0.0713 | -0.0513 | -0.2572 | -0.4083 | 0.0144 | 2.2305 | 1.663 | 1.562 | 1.3974 | 1.6426 | 1.5115 | 4.0016 | 4.5565 | 4.5363 | 3.9909 | 3.6335 | 4.296 |
Actin | 0.0264 | 0.0001 | 0.0076 | 0.0004 | 0.0006 | 0.0011 | 0.0126 | 0.0001 | 0.0215 | 0.0126 | 0.0057 | 0 | 0.0088 | 0 | 0.0031 | 0 | 0 | 0 |
Bud | 0.0001 | 0 | 0.0001 | 0 | 0 | 0.0001 | 0.0004 | 0 | 0.0001 | 0.0005 | 0.0014 | 0 | 0.0002 | 0 | 0.0001 | 0 | 0 | 0 |
Bud Neck | 0.0004 | 0.0002 | 0.0001 | 0 | 0.0002 | 0.0012 | 0.0106 | 0.0004 | 0.0022 | 0.0006 | 0.0007 | 0.0015 | 0.001 | 0.0003 | 0.0055 | 0.0001 | 0.0002 | 0.0013 |
Bud Periphery | 0.0001 | 0 | 0.0002 | 0 | 0 | 0.0001 | 0.0014 | 0 | 0.0002 | 0.0005 | 0.0041 | 0.0001 | 0.0005 | 0.0001 | 0.0001 | 0 | 0 | 0 |
Bud Site | 0.0002 | 0.0002 | 0.0001 | 0 | 0.0001 | 0.0001 | 0.0044 | 0.0002 | 0.0023 | 0.0043 | 0.001 | 0.0001 | 0.0005 | 0.0003 | 0.0003 | 0 | 0.0001 | 0.0001 |
Cell Periphery | 0 | 0 | 0 | 0 | 0 | 0 | 0.0004 | 0 | 0.0001 | 0.0001 | 0.0005 | 0 | 0.0001 | 0 | 0 | 0 | 0 | 0 |
Cytoplasm | 0.0217 | 0.0215 | 0.0054 | 0.0012 | 0.0059 | 0.0019 | 0.0126 | 0.0136 | 0.0042 | 0.0012 | 0.0058 | 0.002 | 0.0078 | 0.0082 | 0.0053 | 0.0009 | 0.0046 | 0.003 |
Cytoplasmic Foci | 0.003 | 0.0006 | 0.0014 | 0 | 0.0064 | 0.0002 | 0.0128 | 0.0001 | 0.008 | 0.0101 | 0.0005 | 0.0001 | 0.003 | 0.0001 | 0.0007 | 0 | 0 | 0.0002 |
Eisosomes | 0.0001 | 0 | 0.0004 | 0 | 0 | 0 | 0.0001 | 0 | 0.0002 | 0.0001 | 0.0001 | 0 | 0.0002 | 0 | 0 | 0 | 0 | 0 |
Endoplasmic Reticulum | 0.0056 | 0.0009 | 0.001 | 0.0005 | 0.0001 | 0.0004 | 0.0033 | 0.0004 | 0.0011 | 0.0003 | 0.0018 | 0.0001 | 0.002 | 0.0004 | 0.0002 | 0 | 0 | 0.0001 |
Endosome | 0.0036 | 0.0014 | 0.0019 | 0.0002 | 0.0034 | 0.0022 | 0.0174 | 0.0003 | 0.0041 | 0.0031 | 0.007 | 0.0001 | 0.0083 | 0.0004 | 0.0004 | 0 | 0 | 0.0005 |
Golgi | 0.0011 | 0 | 0.0024 | 0 | 0.0026 | 0.0014 | 0.0029 | 0 | 0.0024 | 0.0024 | 0.0033 | 0 | 0.0012 | 0 | 0.0007 | 0 | 0 | 0 |
Lipid Particles | 0.0017 | 0.0001 | 0.0082 | 0 | 0.0359 | 0.0036 | 0.0059 | 0 | 0.004 | 0.0058 | 0.0004 | 0 | 0.0019 | 0 | 0.0013 | 0 | 0 | 0.0001 |
Mitochondria | 0.0005 | 0.0003 | 0.0019 | 0.0007 | 0.0006 | 0.002 | 0.0042 | 0.0002 | 0.0015 | 0.001 | 0.0311 | 0.0002 | 0.0023 | 0.0003 | 0.0003 | 0.0001 | 0.0001 | 0.0001 |
None | 0.0045 | 0.0098 | 0.0033 | 0.0002 | 0.0108 | 0.0013 | 0.0062 | 0.0117 | 0.0114 | 0.0008 | 0.0285 | 0.0131 | 0.0213 | 0.0208 | 0.0155 | 0.0002 | 0.0435 | 0.0024 |
Nuclear Periphery | 0.0159 | 0.0219 | 0.0237 | 0.0475 | 0.0037 | 0.014 | 0.0532 | 0.0053 | 0.0203 | 0.0043 | 0.005 | 0.0014 | 0.0123 | 0.0064 | 0.0028 | 0.0029 | 0.0033 | 0.0026 |
Nucleolus | 0.0039 | 0.0082 | 0.0044 | 0.0017 | 0.0083 | 0.0143 | 0.0185 | 0.0063 | 0.0054 | 0.0076 | 0.0189 | 0.0119 | 0.0103 | 0.0081 | 0.0043 | 0.0043 | 0.0189 | 0.0105 |
Nucleus | 0.9006 | 0.9193 | 0.9303 | 0.9457 | 0.8519 | 0.9436 | 0.7952 | 0.9533 | 0.8982 | 0.9332 | 0.8444 | 0.9624 | 0.9038 | 0.9475 | 0.9511 | 0.9895 | 0.9261 | 0.9664 |
Peroxisomes | 0.0043 | 0 | 0.0021 | 0 | 0.0269 | 0.0002 | 0.0117 | 0 | 0.0062 | 0.0059 | 0.0001 | 0 | 0.0015 | 0 | 0.0033 | 0 | 0 | 0 |
Punctate Nuclear | 0.0047 | 0.0139 | 0.0049 | 0.0006 | 0.0425 | 0.0112 | 0.0202 | 0.0065 | 0.0053 | 0.0052 | 0.0357 | 0.0066 | 0.0116 | 0.006 | 0.0047 | 0.0019 | 0.003 | 0.0122 |
Vacuole | 0.0011 | 0.0012 | 0.0002 | 0.0002 | 0.0001 | 0.0004 | 0.0035 | 0.0013 | 0.0007 | 0.0002 | 0.0028 | 0.0003 | 0.001 | 0.0007 | 0.0002 | 0 | 0.0001 | 0.0002 |
Vacuole Periphery | 0.0004 | 0.0003 | 0.0003 | 0.001 | 0.0001 | 0.0006 | 0.0023 | 0.0002 | 0.0007 | 0.0001 | 0.0014 | 0.0001 | 0.0006 | 0.0002 | 0 | 0 | 0 | 0 |
R1 | R2 | |||||||||
---|---|---|---|---|---|---|---|---|---|---|
G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | |
Gene Expression | 30.5006 | 20.8502 | 13.0915 | 33.2855 | 12.7941 | 30.4837 | 28.7846 | 34.4772 | 37.7076 | 34.6252 |
Translational Efficiency | 2.6759 | 3.4957 | 5.4139 | 2.3636 | 5.6369 | 3.0221 | 2.6149 | 2.5569 | 2.5886 | 2.2948 |
Dataset | Hit |
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Protein Concentration | ✘ |
Protein Localization | ✘ |
Gene Expression | ✘ |
Translational Efficiency | ✘ |
Temp | Actin Patch (Sac6-tdTomato) | Cortical Patch (Sla1-GFP) | Late Endosome (Snf7-GFP) | Vacuole (Vph1-GFP) |
---|---|---|---|---|
37℃ | ||||
RT |
Gene / Allele | Actin Patch (Sac6-tdTomato) | Cortical Patch (Sla1-GFP) | Late Endosome (Snf7-GFP) | Vacuole (Sac6-tdTomato) |
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Gene | Images |
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Gene | Images |
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