Standard name | |
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Human Ortholog | |
Description | DEAH-box RNA helicase involved in second catalytic step of splicing and in exon ligation; exhibits ATP-dependent RNA unwinding activity; mediates the release of Yju2p and Cwc25p in the second step; in the absence of ATP, stabilizes the binding of Cwc25p to the spliceosome in the first catalytic step; missense mutation in human ortholog DHX38 associated with early-onset retinitis pigmentosa |
ensLOC | DeepLoc | |||||||||||||||||||||||
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Localization | WT1 | WT2 | WT3 | RAP60 | RAP140 | RAP220 | RAP300 | RAP380 | RAP460 | RAP540 | RAP620 | RAP700 | HU80 | HU120 | HU160 | rpd3Δ_1 | rpd3Δ_2 | rpd3Δ_3 | WT1 | WT2 | WT3 | AF100 | AF140 | AF180 |
Cortical Patches | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 |
Bud | 0 | 0 | 1 | 0 | 0 | 2 | 1 | 3 | 1 | 3 | 1 | 2 | 0 | 0 | 0 | 0 | 0 | 1 | 1 | 0 | 1 | 1 | 3 | 5 |
Bud Neck | 1 | 0 | 0 | 0 | 0 | 0 | 1 | 2 | 0 | 1 | 3 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 2 | 2 |
Bud Site | 0 | 0 | 0 | 1 | 1 | 0 | 6 | 4 | 2 | 4 | 2 | 6 | 0 | 1 | 0 | 0 | 0 | 0 | – | – | – | – | – | – |
Cell Periphery | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Cytoplasm | 9 | 13 | 18 | 14 | 31 | 51 | 60 | 63 | 41 | 61 | 21 | 63 | 9 | 42 | 52 | 29 | 29 | 28 | 3 | 4 | 11 | 9 | 16 | 18 |
Endoplasmic Reticulum | 2 | 0 | 1 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 13 | 8 | 9 | 0 | 0 | 0 | 0 | 2 | 2 |
Endosome | 1 | 0 | 0 | 0 | 2 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 7 | 5 | 7 | 2 | 0 | 1 | 2 | 1 | 2 |
Golgi | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 3 | 1 | 3 | 3 | 0 | 0 | 0 | 1 | 0 |
Mitochondria | 12 | 63 | 85 | 88 | 65 | 148 | 177 | 234 | 172 | 195 | 93 | 195 | 32 | 11 | 53 | 16 | 12 | 14 | 3 | 5 | 4 | 2 | 6 | 11 |
Nucleus | 162 | 95 | 60 | 60 | 42 | 55 | 64 | 61 | 29 | 45 | 19 | 38 | 81 | 89 | 85 | 138 | 139 | 183 | 162 | 107 | 67 | 76 | 130 | 114 |
Nuclear Periphery | 0 | 0 | 0 | 0 | 0 | 0 | 2 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 1 |
Nucleolus | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 2 | 3 |
Peroxisomes | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 |
SpindlePole | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 1 | 1 | 1 | 0 | 3 | 0 | 0 | 0 | 1 | 2 | 1 | 2 | 0 | 1 | 1 | 4 | 5 |
Vac/Vac Membrane | 16 | 25 | 3 | 3 | 10 | 8 | 14 | 8 | 5 | 4 | 7 | 11 | 11 | 14 | 28 | 42 | 30 | 49 | 37 | 25 | 45 | 19 | 73 | 90 |
Unique Cell Count | 189 | 144 | 127 | 123 | 129 | 202 | 244 | 298 | 199 | 237 | 110 | 232 | 115 | 145 | 181 | 212 | 204 | 264 | 220 | 146 | 137 | 116 | 251 | 262 |
Labelled Cell Count | 203 | 196 | 169 | 166 | 153 | 264 | 326 | 376 | 251 | 314 | 146 | 319 | 133 | 157 | 219 | 250 | 226 | 297 | 220 | 146 | 137 | 116 | 251 | 262 |
Screen | WT1 | WT2 | WT3 | RAP60 | RAP140 | RAP220 | RAP300 | RAP380 | RAP460 | RAP540 | RAP620 | RAP700 | HU80 | HU120 | HU160 | rpd3Δ_1 | rpd3Δ_2 | rpd3Δ_3 | AF100 | AF140 | AF180 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Mean Cell GFP Intensity (1e-4) | 4.8 | 3.7 | 3.0 | 3.2 | 3.4 | 2.9 | 2.7 | 2.7 | 2.3 | 2.5 | 2.5 | 2.2 | 4.0 | 4.4 | 3.8 | 6.2 | 6.5 | 6.7 | 4.2 | 4.5 | 4.8 |
Std Deviation (1e-4) | 0.7 | 0.5 | 0.2 | 0.8 | 1.3 | 0.7 | 1.0 | 0.4 | 0.3 | 0.9 | 0.7 | 0.7 | 0.7 | 1.2 | 1.0 | 1.8 | 2.0 | 1.9 | 0.9 | 1.4 | 1.4 |
Intensity Change (Log2) | – | – | – | 0.08 | 0.19 | -0.05 | -0.14 | -0.14 | -0.37 | -0.29 | -0.25 | -0.46 | 0.42 | 0.56 | 0.34 | 1.04 | 1.1 | 1.15 | 0.47 | 0.58 | 0.67 |
Localization | RAP60 | RAP140 | RAP220 | RAP300 | RAP380 | RAP460 | RAP540 | RAP620 | RAP700 | HU80 | HU120 | HU160 | rpd3Δ_1 | rpd3Δ_2 | rpd3Δ_3 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Actin | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – |
Bud | – | – | – | – | – | – | – | – | – | – | – | – | 0 | 0 | 0 |
Bud Neck | – | – | – | – | – | – | – | – | – | – | – | – | 0 | 0 | 0 |
Bud Site | – | – | – | – | – | – | – | – | – | – | – | – | 0 | 0 | 0 |
Cell Periphery | – | – | – | – | – | – | – | – | – | – | – | – | 0 | 0 | 0 |
Cyto | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – |
Endoplasmic Reticulum | – | – | – | – | – | – | – | – | – | – | – | – | 0 | 0 | 0 |
Endosome | – | – | – | – | – | – | – | – | – | – | – | – | 0 | 0 | 0 |
Golgi | – | – | – | – | – | – | – | – | – | – | – | – | 0 | 0 | 0 |
Mitochondria | – | – | – | – | – | – | – | – | – | – | – | – | 0 | 0 | 0 |
Nuclear Periphery | – | – | – | – | – | – | – | – | – | – | – | – | 0 | 0 | 0 |
Nuc | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – |
Nucleolus | – | – | – | – | – | – | – | – | – | – | – | – | 0 | 0 | 0 |
Peroxisomes | – | – | – | – | – | – | – | – | – | – | – | – | 0 | 0 | 0 |
SpindlePole | – | – | – | – | – | – | – | – | – | – | – | – | 0 | 0 | 0 |
Vac | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – |
Cortical Patches | – | – | – | – | – | – | – | – | – | – | – | – | 0 | 0 | 0 |
Cytoplasm | – | – | – | – | – | – | – | – | – | – | – | – | 0 | 0 | 0 |
Nucleus | – | – | – | – | – | – | – | – | – | – | – | – | 0 | 0 | 0 |
Vacuole | – | – | – | – | – | – | – | – | – | – | – | – | 4.6 | 3.6 | 4.4 |
R1 | R2 | R3 | ||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
G1 Pre-START | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | G1 Pre-START | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | G1 Pre-START | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | |
Concentration | 1.3284 | 0.8479 | 0.6806 | 0.5729 | 0.4958 | 0.7804 | 1.7854 | 1.4482 | 1.2661 | 0.8088 | 0.9687 | 1.1595 | 1.071 | 1.442 | 1.07 | 0.8986 | 0.8731 | 1.0577 |
Actin | 0.1086 | 0.0004 | 0.0203 | 0.0006 | 0.0216 | 0.0084 | 0.0377 | 0.001 | 0.0071 | 0.027 | 0.0131 | 0.0079 | 0.0001 | 0.0001 | 0.0202 | 0.0002 | 0.0004 | 0.0001 |
Bud | 0.0006 | 0.0001 | 0.0001 | 0.0001 | 0.0002 | 0.0002 | 0.0008 | 0.0001 | 0.0006 | 0.0001 | 0.0002 | 0.0002 | 0 | 0 | 0.0002 | 0.0013 | 0.0001 | 0 |
Bud Neck | 0.0067 | 0.0008 | 0.0009 | 0.0013 | 0.0025 | 0.0058 | 0.0112 | 0.0003 | 0.0069 | 0.0023 | 0.0018 | 0.0021 | 0.0003 | 0.0002 | 0.0004 | 0.0022 | 0.0004 | 0.0011 |
Bud Periphery | 0.0007 | 0.0001 | 0.0003 | 0.0003 | 0.0004 | 0.0003 | 0.0017 | 0.0001 | 0.0031 | 0.0001 | 0.0004 | 0.0013 | 0 | 0 | 0.0004 | 0.0022 | 0.0001 | 0 |
Bud Site | 0.0105 | 0.0013 | 0.0005 | 0.0003 | 0.0012 | 0.0004 | 0.0054 | 0.0004 | 0.0023 | 0.0003 | 0.001 | 0.0002 | 0.0002 | 0.0002 | 0.0018 | 0.0115 | 0.0004 | 0 |
Cell Periphery | 0.0003 | 0 | 0.0002 | 0.0002 | 0.0003 | 0 | 0.0009 | 0 | 0.0002 | 0 | 0.0001 | 0.0002 | 0.0001 | 0.0001 | 0.0003 | 0.0012 | 0 | 0 |
Cytoplasm | 0.014 | 0.0402 | 0.0187 | 0.0079 | 0.0431 | 0.0222 | 0.0422 | 0.0418 | 0.0187 | 0.0207 | 0.0251 | 0.0133 | 0.0466 | 0.0678 | 0.0241 | 0.0036 | 0.0071 | 0.0179 |
Cytoplasmic Foci | 0.0232 | 0.0015 | 0.0046 | 0.0012 | 0.0195 | 0.0022 | 0.0354 | 0.0006 | 0.0031 | 0.0013 | 0.0056 | 0.0011 | 0.0005 | 0.0009 | 0.0056 | 0.0031 | 0.0025 | 0.0005 |
Eisosomes | 0.0007 | 0 | 0.0009 | 0.0002 | 0.0006 | 0 | 0.0003 | 0 | 0.0001 | 0 | 0.0003 | 0.0001 | 0.0001 | 0.0001 | 0.0001 | 0 | 0 | 0 |
Endoplasmic Reticulum | 0.0046 | 0.0014 | 0.0018 | 0.0004 | 0.0115 | 0.0013 | 0.0148 | 0.0026 | 0.0017 | 0.0005 | 0.0051 | 0.0018 | 0.0037 | 0.0024 | 0.0019 | 0.0006 | 0.0003 | 0.0007 |
Endosome | 0.0236 | 0.0011 | 0.0062 | 0.0022 | 0.0203 | 0.0076 | 0.0329 | 0.0041 | 0.0067 | 0.0012 | 0.0254 | 0.0051 | 0.0009 | 0.0014 | 0.0115 | 0.0202 | 0.006 | 0.0007 |
Golgi | 0.0123 | 0.0001 | 0.0031 | 0.0012 | 0.007 | 0.0015 | 0.0125 | 0.0003 | 0.0022 | 0.0027 | 0.0027 | 0.0013 | 0 | 0 | 0.0029 | 0.002 | 0.0016 | 0 |
Lipid Particles | 0.0274 | 0.0001 | 0.0047 | 0.0377 | 0.0262 | 0.0008 | 0.0339 | 0.0007 | 0.0013 | 0.0003 | 0.0116 | 0.0052 | 0.0001 | 0.0002 | 0.0064 | 0.0061 | 0.0233 | 0.0001 |
Mitochondria | 0.0049 | 0.0004 | 0.0059 | 0.0544 | 0.0036 | 0.0012 | 0.0051 | 0.0006 | 0.0019 | 0.0007 | 0.005 | 0.0074 | 0.0003 | 0.0004 | 0.0033 | 0.0013 | 0.0018 | 0.0003 |
None | 0.0253 | 0.0474 | 0.0242 | 0.0064 | 0.0486 | 0.0115 | 0.0431 | 0.0539 | 0.0421 | 0.0065 | 0.0065 | 0.0113 | 0.137 | 0.1947 | 0.0446 | 0.0009 | 0.1252 | 0.0648 |
Nuclear Periphery | 0.0281 | 0.0162 | 0.017 | 0.0345 | 0.0456 | 0.0103 | 0.0253 | 0.0164 | 0.0233 | 0.0107 | 0.0446 | 0.0108 | 0.0132 | 0.0299 | 0.0171 | 0.0062 | 0.0044 | 0.0053 |
Nucleolus | 0.0085 | 0.0045 | 0.0046 | 0.0105 | 0.0043 | 0.0102 | 0.0197 | 0.0032 | 0.0091 | 0.0026 | 0.0103 | 0.008 | 0.0063 | 0.0029 | 0.0049 | 0.0127 | 0.0055 | 0.0073 |
Nucleus | 0.6539 | 0.8748 | 0.8689 | 0.8241 | 0.6515 | 0.8985 | 0.6249 | 0.8629 | 0.8489 | 0.9163 | 0.7883 | 0.9011 | 0.7801 | 0.6906 | 0.8232 | 0.8797 | 0.7892 | 0.887 |
Peroxisomes | 0.0181 | 0.0003 | 0.0068 | 0.0024 | 0.0137 | 0.0004 | 0.0101 | 0.0001 | 0.0003 | 0.0006 | 0.0076 | 0.0032 | 0 | 0 | 0.0117 | 0.0008 | 0.0051 | 0 |
Punctate Nuclear | 0.0252 | 0.0078 | 0.0075 | 0.0095 | 0.0743 | 0.016 | 0.0319 | 0.0072 | 0.017 | 0.0056 | 0.0323 | 0.0167 | 0.0085 | 0.0065 | 0.0162 | 0.0028 | 0.0258 | 0.0135 |
Vacuole | 0.0016 | 0.0012 | 0.0019 | 0.0014 | 0.0022 | 0.0009 | 0.0085 | 0.0032 | 0.0025 | 0.0003 | 0.0091 | 0.001 | 0.0016 | 0.0012 | 0.0022 | 0.0384 | 0.0005 | 0.0004 |
Vacuole Periphery | 0.0011 | 0.0003 | 0.0008 | 0.0034 | 0.0017 | 0.0004 | 0.0017 | 0.0005 | 0.0009 | 0.0001 | 0.0039 | 0.0006 | 0.0002 | 0.0003 | 0.0011 | 0.0032 | 0.0002 | 0.0001 |
R1 | R2 | |||||||||
---|---|---|---|---|---|---|---|---|---|---|
G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | |
Gene Expression | 9.9499 | 10.4281 | 10.6968 | 12.2373 | 8.6744 | 8.2298 | 10.3113 | 10.1513 | 10.8163 | 14.5015 |
Translational Efficiency | 0.6875 | 0.4537 | 0.4684 | 0.3662 | 0.5583 | 0.6564 | 0.4849 | 0.374 | 0.4405 | 0.3686 |
Dataset | Hit |
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Protein Concentration | ✘ |
Protein Localization | ✘ |
Gene Expression | ✘ |
Translational Efficiency | ✘ |
Temp | Actin Patch (Sac6-tdTomato) | Cortical Patch (Sla1-GFP) | Late Endosome (Snf7-GFP) | Vacuole (Vph1-GFP) |
---|---|---|---|---|
37℃ | ||||
RT |
Gene / Allele | Actin Patch (Sac6-tdTomato) | Cortical Patch (Sla1-GFP) | Late Endosome (Snf7-GFP) | Vacuole (Sac6-tdTomato) |
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Gene | Images |
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Gene | Images |
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