Standard name | |
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Human Ortholog | |
Description | Component of the RSC chromatin remodeling complex; RSC functions in transcriptional regulation and elongation, chromosome stability, and establishing sister chromatid cohesion; involved in telomere maintenance |
ensLOC | DeepLoc | |||||||||||||||||||||||
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Localization | WT1 | WT2 | WT3 | RAP60 | RAP140 | RAP220 | RAP300 | RAP380 | RAP460 | RAP540 | RAP620 | RAP700 | HU80 | HU120 | HU160 | rpd3Δ_1 | rpd3Δ_2 | rpd3Δ_3 | WT1 | WT2 | WT3 | AF100 | AF140 | AF180 |
Cortical Patches | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 2 | 0 |
Bud | 0 | 0 | 0 | 0 | 0 | 0 | 2 | 0 | 0 | 2 | 0 | 2 | 0 | 1 | 1 | 0 | 0 | – | 0 | 1 | 0 | 0 | 0 | 0 |
Bud Neck | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 2 | 0 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 |
Bud Site | 0 | 0 | 0 | 0 | 1 | 4 | 11 | 3 | 6 | 13 | 2 | 23 | 0 | 0 | 2 | 0 | 0 | – | – | – | – | – | – | – |
Cell Periphery | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 |
Cytoplasm | 2 | 6 | 4 | 2 | 7 | 9 | 5 | 12 | 9 | 11 | 8 | 4 | 7 | 18 | 15 | 13 | 6 | – | 0 | 1 | 0 | 0 | 0 | 0 |
Endoplasmic Reticulum | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | – | 0 | 0 | 0 | 1 | 0 | 0 |
Endosome | 0 | 0 | 0 | 1 | 0 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 1 | 4 | 0 | 1 | – | 0 | 0 | 2 | 0 | 2 | 0 |
Golgi | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | – | 0 | 1 | 0 | 0 | 2 | 5 |
Mitochondria | 6 | 3 | 4 | 3 | 6 | 16 | 39 | 28 | 30 | 47 | 13 | 34 | 0 | 1 | 3 | 8 | 6 | – | 0 | 1 | 1 | 0 | 3 | 2 |
Nucleus | 77 | 137 | 161 | 68 | 216 | 191 | 286 | 341 | 160 | 244 | 158 | 250 | 104 | 253 | 219 | 131 | 87 | – | 66 | 133 | 143 | 67 | 118 | 153 |
Nuclear Periphery | 0 | 0 | 1 | 0 | 0 | 0 | 9 | 6 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | – | 0 | 0 | 0 | 0 | 0 | 0 |
Nucleolus | 53 | 55 | 92 | 26 | 63 | 129 | 185 | 230 | 130 | 190 | 169 | 247 | 57 | 119 | 103 | 50 | 29 | – | 23 | 18 | 52 | 29 | 52 | 45 |
Peroxisomes | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 4 | 4 | 1 | 0 | – | 0 | 0 | 0 | 0 | 0 | 1 |
SpindlePole | 0 | 0 | 1 | 0 | 0 | 1 | 1 | 5 | 2 | 0 | 1 | 1 | 0 | 3 | 11 | 0 | 1 | – | 0 | 0 | 0 | 0 | 0 | 0 |
Vac/Vac Membrane | 0 | 1 | 1 | 0 | 1 | 1 | 5 | 5 | 1 | 1 | 0 | 3 | 0 | 1 | 3 | 2 | 0 | – | 2 | 3 | 5 | 4 | 4 | 12 |
Unique Cell Count | 96 | 155 | 195 | 77 | 252 | 255 | 399 | 493 | 253 | 361 | 252 | 382 | 129 | 305 | 280 | 174 | 110 | 93 | 163 | 208 | 108 | 192 | 227 | |
Labelled Cell Count | 138 | 202 | 264 | 100 | 294 | 352 | 543 | 633 | 342 | 509 | 352 | 566 | 168 | 401 | 365 | 206 | 132 | 93 | 163 | 208 | 108 | 192 | 227 |
Screen | WT1 | WT2 | WT3 | RAP60 | RAP140 | RAP220 | RAP300 | RAP380 | RAP460 | RAP540 | RAP620 | RAP700 | HU80 | HU120 | HU160 | rpd3Δ_1 | rpd3Δ_2 | rpd3Δ_3 | AF100 | AF140 | AF180 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Mean Cell GFP Intensity (1e-4) | 10.0 | 11.8 | 10.1 | 9.8 | 9.8 | 8.2 | 7.4 | 8.2 | 7.7 | 7.3 | 7.6 | 7.5 | 11.5 | 12.0 | 11.4 | 10.0 | 11.8 | – | 11.0 | 10.9 | 11.8 |
Std Deviation (1e-4) | 2.2 | 3.0 | 2.7 | 3.2 | 3.0 | 2.5 | 2.4 | 2.6 | 2.4 | 2.2 | 2.2 | 2.5 | 3.3 | 4.0 | 4.3 | 2.8 | 4.2 | – | 2.6 | 3.4 | 2.5 |
Intensity Change (Log2) | – | – | – | -0.04 | -0.04 | -0.3 | -0.44 | -0.3 | -0.38 | -0.47 | -0.41 | -0.42 | 0.19 | 0.26 | 0.18 | -0.01 | 0.24 | – | 0.13 | 0.12 | 0.23 |
Localization | RAP60 | RAP140 | RAP220 | RAP300 | RAP380 | RAP460 | RAP540 | RAP620 | RAP700 | HU80 | HU120 | HU160 | rpd3Δ_1 | rpd3Δ_2 | rpd3Δ_3 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Cortical Patches | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | – |
Bud | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | – |
Bud Neck | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | – |
Bud Site | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 3.5 | 0 | 0 | 0 | 0 | 0 | – |
Cell Periphery | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | – |
Cytoplasm | 0 | 0 | 0.9 | 0 | 0 | 0.9 | 0.7 | 0.7 | 0 | 0 | 2.0 | 1.8 | 2.5 | 0 | – |
Endoplasmic Reticulum | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | – |
Endosome | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | – |
Golgi | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | – |
Mitochondria | 0 | 0 | 2.2 | 3.4 | 2.0 | 3.9 | 4.3 | 1.7 | 3.1 | 0 | 0 | 0 | 1.4 | 0 | – |
Nucleus | 1.2 | 0.9 | -2.0 | -2.9 | -3.6 | -4.5 | -3.8 | -4.6 | -4.3 | -0.4 | 0.1 | -1.2 | -1.7 | -0.7 | – |
Nuclear Periphery | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | – |
Nucleolus | -2.0 | -4.9 | 0.7 | -0.2 | -0.1 | 0.9 | 1.2 | 4.2 | 4.0 | -0.5 | -1.8 | -2.3 | -3.6 | -3.6 | – |
Peroxisomes | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | – |
SpindlePole | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | – |
Vacuole | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | – |
R1 | R2 | R3 | ||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
G1 Pre-START | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | G1 Pre-START | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | G1 Pre-START | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | |
Concentration | 6.0967 | 7.7478 | 6.8592 | 5.8423 | 5.9072 | 5.6482 | 7.502 | 8.7066 | 6.9698 | 6.4711 | 6.2977 | 6.8849 | 6.9009 | 11.2914 | 8.689 | 8.5889 | 7.8922 | 8.5773 |
Actin | 0.2321 | 0 | 0.0016 | 0.0003 | 0 | 0 | 0.0045 | 0 | 0.0001 | 0.0209 | 0.0002 | 0.0127 | 0.1863 | 0 | 0 | 0 | 0.0044 | 0 |
Bud | 0.0001 | 0 | 0.0001 | 0.0001 | 0.0001 | 0.0001 | 0.0037 | 0 | 0 | 0.0005 | 0.0002 | 0.0004 | 0.0003 | 0.0001 | 0 | 0 | 0.0001 | 0 |
Bud Neck | 0.001 | 0 | 0.0001 | 0.0002 | 0.0002 | 0.001 | 0.0001 | 0 | 0.0001 | 0.0002 | 0.0053 | 0.0007 | 0.0004 | 0 | 0 | 0 | 0.0002 | 0.0002 |
Bud Periphery | 0.0002 | 0 | 0.0001 | 0.0004 | 0.0001 | 0.0002 | 0.0029 | 0 | 0.0001 | 0.0007 | 0.0005 | 0.0006 | 0.0007 | 0.0001 | 0 | 0 | 0.0002 | 0 |
Bud Site | 0.0002 | 0 | 0.0004 | 0.0012 | 0.0001 | 0.0002 | 0.0009 | 0 | 0.0001 | 0.0006 | 0.0004 | 0.0008 | 0.0009 | 0.0001 | 0 | 0 | 0.0004 | 0 |
Cell Periphery | 0.0001 | 0 | 0 | 0.0006 | 0 | 0.0001 | 0.0002 | 0 | 0 | 0 | 0.0003 | 0.0001 | 0.0003 | 0 | 0 | 0 | 0.0001 | 0 |
Cytoplasm | 0.0001 | 0 | 0.0002 | 0.0001 | 0 | 0 | 0.0108 | 0 | 0.0002 | 0.0025 | 0.0006 | 0.0087 | 0.0001 | 0 | 0 | 0 | 0.0001 | 0 |
Cytoplasmic Foci | 0.0007 | 0 | 0.0025 | 0.0006 | 0 | 0 | 0.0313 | 0 | 0.0102 | 0.0129 | 0.002 | 0.0047 | 0.0023 | 0 | 0 | 0 | 0.0857 | 0 |
Eisosomes | 0.0029 | 0 | 0 | 0.0002 | 0 | 0 | 0.0001 | 0 | 0 | 0.0003 | 0 | 0.0001 | 0.0002 | 0 | 0 | 0 | 0 | 0 |
Endoplasmic Reticulum | 0.0008 | 0 | 0.0001 | 0.0001 | 0 | 0 | 0.0006 | 0 | 0.0001 | 0.0004 | 0.0002 | 0.0008 | 0.0002 | 0 | 0 | 0 | 0 | 0 |
Endosome | 0.0011 | 0 | 0.0072 | 0.0016 | 0 | 0 | 0.0054 | 0 | 0.0004 | 0.0025 | 0.0005 | 0.0061 | 0.0008 | 0 | 0 | 0 | 0.0005 | 0 |
Golgi | 0.0071 | 0 | 0.0166 | 0.0004 | 0 | 0 | 0.0029 | 0 | 0.0002 | 0.0028 | 0.0002 | 0.0017 | 0.0039 | 0 | 0 | 0 | 0.0018 | 0 |
Lipid Particles | 0.001 | 0 | 0.0001 | 0.005 | 0 | 0 | 0.0274 | 0 | 0.0007 | 0.0039 | 0.0044 | 0.0015 | 0.0013 | 0 | 0 | 0 | 0.0054 | 0 |
Mitochondria | 0.0005 | 0.0002 | 0.0054 | 0.0644 | 0.0003 | 0.0001 | 0.0079 | 0.0001 | 0.0003 | 0.0127 | 0.0023 | 0.0013 | 0.0015 | 0.0014 | 0.0004 | 0.0003 | 0.0017 | 0.0002 |
None | 0.0007 | 0 | 0 | 0.0004 | 0 | 0 | 0.0313 | 0 | 0.0002 | 0.0053 | 0.0005 | 0.0019 | 0.0002 | 0 | 0 | 0 | 0.0001 | 0 |
Nuclear Periphery | 0.0003 | 0.0003 | 0.0196 | 0.0001 | 0.0001 | 0.0001 | 0.0081 | 0.0008 | 0.002 | 0.0058 | 0.0048 | 0.0042 | 0.0006 | 0.0002 | 0.001 | 0.0002 | 0.0023 | 0 |
Nucleolus | 0.0229 | 0.0302 | 0.0312 | 0.0376 | 0.5258 | 0.3165 | 0.0478 | 0.0257 | 0.0286 | 0.0355 | 0.418 | 0.1892 | 0.1785 | 0.0455 | 0.0248 | 0.0717 | 0.295 | 0.1864 |
Nucleus | 0.7269 | 0.9688 | 0.9128 | 0.8799 | 0.4716 | 0.6811 | 0.7845 | 0.973 | 0.9425 | 0.8381 | 0.5511 | 0.7556 | 0.6158 | 0.9521 | 0.9732 | 0.9274 | 0.5319 | 0.8128 |
Peroxisomes | 0.0007 | 0 | 0.0004 | 0.0025 | 0 | 0 | 0.0191 | 0 | 0.0011 | 0.0316 | 0.0002 | 0.0023 | 0.0037 | 0 | 0 | 0 | 0.0668 | 0 |
Punctate Nuclear | 0.0002 | 0.0002 | 0.0008 | 0.0001 | 0.0014 | 0.0004 | 0.0077 | 0.0002 | 0.012 | 0.0227 | 0.0052 | 0.0019 | 0.0008 | 0 | 0.0001 | 0.0001 | 0.0028 | 0.0001 |
Vacuole | 0 | 0 | 0.0002 | 0.0033 | 0.0001 | 0.0003 | 0.0015 | 0 | 0.0006 | 0.0001 | 0.0013 | 0.0032 | 0.0008 | 0.0001 | 0.0001 | 0 | 0.0002 | 0.0001 |
Vacuole Periphery | 0.0001 | 0 | 0.0005 | 0.0007 | 0.0001 | 0 | 0.0013 | 0 | 0.0006 | 0.0002 | 0.0016 | 0.0013 | 0.0004 | 0.0002 | 0.0001 | 0 | 0.0003 | 0 |
R1 | R2 | |||||||||
---|---|---|---|---|---|---|---|---|---|---|
G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | |
Gene Expression | 12.0651 | 16.9952 | 18.9168 | 22.27 | 25.1234 | 4.3849 | 17.8448 | 20.7425 | 18.0457 | 26.2407 |
Translational Efficiency | 1.9957 | 1.5558 | 1.0921 | 1.049 | 0.9162 | 4.2929 | 1.5716 | 0.9748 | 1.1879 | 0.9843 |
Dataset | Hit |
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Protein Concentration | ✘ |
Protein Localization | ✘ |
Gene Expression | ✘ |
Translational Efficiency | ✘ |
Temp | Actin Patch (Sac6-tdTomato) | Cortical Patch (Sla1-GFP) | Late Endosome (Snf7-GFP) | Vacuole (Vph1-GFP) |
---|---|---|---|---|
37℃ | ||||
RT |
Gene / Allele | Actin Patch (Sac6-tdTomato) | Cortical Patch (Sla1-GFP) | Late Endosome (Snf7-GFP) | Vacuole (Sac6-tdTomato) |
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Gene | Images |
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Gene | Images |
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