Standard name | |
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Human Ortholog | |
Description | Structural component of 3 complexes; subunit of the Nup84p nuclear pore subcomplex that contributes to nucleocytoplasmic transport and NPC biogenesis; subunit of the COPII vesicle coat required for ER-to-Golgi transport; subunit of SEACAT, a subcomplex of the coatomer-related, vacuolar-associated SEA complex, that inhibits the TORC1 inhibitory role of SEACIT (Iml1p-Npr2p-Npr3p), a GAP for Gtr1p, thereby resulting in activation of TORC1 signaling; human SEC13 homolog |
ensLOC | DeepLoc | |||||||||||||||||||||||
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Localization | WT1 | WT2 | WT3 | RAP60 | RAP140 | RAP220 | RAP300 | RAP380 | RAP460 | RAP540 | RAP620 | RAP700 | HU80 | HU120 | HU160 | rpd3Δ_1 | rpd3Δ_2 | rpd3Δ_3 | WT1 | WT2 | WT3 | AF100 | AF140 | AF180 |
Cortical Patches | 5 | 84 | 42 | 46 | 51 | 59 | 35 | 57 | – | 44 | 44 | 49 | 23 | 12 | 13 | 51 | 67 | 46 | 26 | 114 | 68 | 31 | 56 | 47 |
Bud | 0 | 4 | 2 | 2 | 4 | 7 | 3 | 2 | – | 5 | 8 | 6 | 0 | 0 | 1 | 6 | 6 | 1 | 0 | 0 | 0 | 0 | 0 | 0 |
Bud Neck | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 |
Bud Site | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | – | – | – | – | – | – |
Cell Periphery | 0 | 4 | 3 | 2 | 6 | 0 | 1 | 5 | – | 4 | 2 | 5 | 1 | 1 | 0 | 2 | 3 | 2 | 0 | 0 | 1 | 0 | 0 | 0 |
Cytoplasm | 2 | 12 | 0 | 3 | 4 | 8 | 7 | 14 | – | 2 | 2 | 4 | 2 | 2 | 3 | 1 | 4 | 5 | 0 | 1 | 0 | 1 | 0 | 0 |
Endoplasmic Reticulum | 7 | 167 | 55 | 56 | 81 | 89 | 97 | 83 | – | 40 | 42 | 47 | 32 | 17 | 21 | 4 | 11 | 6 | 8 | 64 | 13 | 8 | 13 | 21 |
Endosome | 0 | 0 | 0 | 0 | 0 | 0 | 2 | 2 | – | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Golgi | 6 | 91 | 70 | 76 | 85 | 61 | 80 | 78 | – | 55 | 41 | 63 | 27 | 22 | 43 | 149 | 149 | 129 | 21 | 42 | 28 | 22 | 41 | 43 |
Mitochondria | 8 | 10 | 51 | 44 | 45 | 99 | 121 | 122 | – | 119 | 143 | 150 | 0 | 11 | 2 | 22 | 21 | 15 | 0 | 1 | 0 | 2 | 1 | 1 |
Nucleus | 1 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | – | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Nuclear Periphery | 0 | 0 | 0 | 0 | 0 | 1 | 3 | 2 | – | 3 | 3 | 4 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 |
Nucleolus | 1 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | – | 0 | 0 | 2 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Peroxisomes | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | – | 0 | 0 | 2 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 2 |
SpindlePole | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Vac/Vac Membrane | 0 | 1 | 1 | 0 | 0 | 0 | 1 | 1 | – | 4 | 0 | 1 | 2 | 1 | 3 | 2 | 2 | 1 | 0 | 0 | 0 | 0 | 1 | 2 |
Unique Cell Count | 19 | 214 | 106 | 106 | 126 | 177 | 202 | 203 | 162 | 165 | 187 | 48 | 41 | 56 | 155 | 166 | 141 | 60 | 230 | 114 | 72 | 118 | 125 | |
Labelled Cell Count | 30 | 373 | 224 | 230 | 276 | 325 | 350 | 366 | 278 | 285 | 334 | 87 | 67 | 86 | 237 | 263 | 205 | 60 | 230 | 114 | 72 | 118 | 125 |
Screen | WT1 | WT2 | WT3 | RAP60 | RAP140 | RAP220 | RAP300 | RAP380 | RAP460 | RAP540 | RAP620 | RAP700 | HU80 | HU120 | HU160 | rpd3Δ_1 | rpd3Δ_2 | rpd3Δ_3 | AF100 | AF140 | AF180 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Mean Cell GFP Intensity (1e-4) | 27.1 | 32.6 | 22.3 | 21.8 | 20.9 | 19.1 | 17.9 | 18.1 | – | 17.7 | 17.3 | 17.0 | 33.7 | 34.5 | 33.6 | 41.1 | 40.6 | 42.2 | 33.8 | 35.4 | 37.1 |
Std Deviation (1e-4) | 9.5 | 6.0 | 4.6 | 4.7 | 3.8 | 4.0 | 3.9 | 3.9 | – | 4.1 | 3.8 | 4.0 | 9.6 | 13.5 | 10.7 | 9.3 | 9.6 | 10.1 | 12.4 | 7.5 | 10.9 |
Intensity Change (Log2) | – | – | – | -0.04 | -0.09 | -0.22 | -0.32 | -0.3 | – | -0.33 | -0.37 | -0.4 | 0.59 | 0.63 | 0.59 | 0.88 | 0.86 | 0.92 | 0.6 | 0.66 | 0.73 |
Localization | RAP60 | RAP140 | RAP220 | RAP300 | RAP380 | RAP460 | RAP540 | RAP620 | RAP700 | HU80 | HU120 | HU160 | rpd3Δ_1 | rpd3Δ_2 | rpd3Δ_3 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Cortical Patches | 0.6 | 0.1 | -1.1 | -4.3 | -2.1 | – | -2.1 | -2.2 | -2.4 | 1.0 | -1.2 | -2.1 | -1.1 | 0.1 | -1.1 |
Bud | 0 | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Bud Neck | 0 | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Bud Site | 0 | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Cell Periphery | 0 | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Cytoplasm | 0 | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Endoplasmic Reticulum | 0.1 | 1.9 | -0.3 | -0.6 | -1.8 | – | -4.6 | -4.4 | -4.6 | 1.7 | -1.1 | -1.7 | -9.4 | -8.5 | -8.6 |
Endosome | 0 | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Golgi | 0.9 | 0.2 | -5.2 | -4.4 | -4.6 | – | -5.1 | -6.7 | -5.3 | -1.2 | -1.4 | 1.4 | 6.5 | 4.8 | 5.0 |
Mitochondria | -1.0 | -1.9 | 1.3 | 2.0 | 2.0 | – | 4.2 | 6.9 | 5.7 | -5.9 | -2.3 | -5.7 | -6.0 | -6.5 | -6.6 |
Nucleus | 0 | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Nuclear Periphery | 0 | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Nucleolus | 0 | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Peroxisomes | 0 | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
SpindlePole | 0 | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Vacuole | 0 | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
R1 | R2 | R3 | ||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
G1 Pre-START | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | G1 Pre-START | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | G1 Pre-START | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | |
Concentration | 32.7715 | 33.2064 | 33.4025 | 32.399 | 31.0112 | 33.303 | 36.0193 | 37.054 | 36.281 | 35.7569 | 34.1429 | 36.7227 | 34.9262 | 35.7214 | 33.8445 | 34.3966 | 34.0792 | 33.8679 |
Actin | 0.0462 | 0.014 | 0.0161 | 0.0043 | 0.0046 | 0.0111 | 0.0351 | 0.0082 | 0.0274 | 0.0069 | 0.0072 | 0.0099 | 0.042 | 0.007 | 0.0124 | 0.004 | 0.0042 | 0.0086 |
Bud | 0 | 0.0001 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0.0001 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Bud Neck | 0.0002 | 0.0002 | 0.0001 | 0.0001 | 0.0001 | 0.0001 | 0.0001 | 0.0001 | 0.0008 | 0.0002 | 0.0001 | 0.0001 | 0.0004 | 0 | 0.0001 | 0.0001 | 0 | 0.0001 |
Bud Periphery | 0.0001 | 0.0001 | 0 | 0 | 0 | 0 | 0.0001 | 0 | 0.0001 | 0 | 0.0001 | 0 | 0.0001 | 0 | 0 | 0 | 0 | 0 |
Bud Site | 0.0001 | 0.0001 | 0 | 0 | 0 | 0 | 0.0001 | 0 | 0.0011 | 0 | 0 | 0 | 0.0002 | 0 | 0 | 0 | 0 | 0 |
Cell Periphery | 0.0003 | 0.0005 | 0.0004 | 0.0002 | 0.0002 | 0.0002 | 0.0003 | 0.0002 | 0.0003 | 0.0005 | 0.0003 | 0.0003 | 0.0005 | 0.0002 | 0.0002 | 0.0003 | 0.0004 | 0.0003 |
Cytoplasm | 0.0001 | 0.0007 | 0.0001 | 0 | 0 | 0 | 0.0003 | 0.0001 | 0.0003 | 0.0001 | 0.0011 | 0.0001 | 0.0007 | 0.0001 | 0.0001 | 0.0001 | 0 | 0.0001 |
Cytoplasmic Foci | 0.0018 | 0.005 | 0.0016 | 0.0005 | 0.0006 | 0.0005 | 0.004 | 0.0014 | 0.0029 | 0.0009 | 0.0022 | 0.0007 | 0.0021 | 0.0011 | 0.001 | 0.0007 | 0.0004 | 0.0006 |
Eisosomes | 0.0084 | 0.0029 | 0.0072 | 0.0024 | 0.0034 | 0.0109 | 0.0056 | 0.0012 | 0.0108 | 0.0131 | 0.0065 | 0.0081 | 0.0082 | 0.0018 | 0.0027 | 0.0032 | 0.0023 | 0.0071 |
Endoplasmic Reticulum | 0.0069 | 0.0079 | 0.0084 | 0.0156 | 0.0048 | 0.0096 | 0.0085 | 0.0099 | 0.009 | 0.0138 | 0.0045 | 0.0119 | 0.0046 | 0.0066 | 0.0111 | 0.015 | 0.0309 | 0.0157 |
Endosome | 0.0086 | 0.0136 | 0.009 | 0.0027 | 0.0048 | 0.0045 | 0.0102 | 0.006 | 0.0064 | 0.0058 | 0.0072 | 0.0048 | 0.0067 | 0.0052 | 0.005 | 0.0066 | 0.0019 | 0.0045 |
Golgi | 0.9109 | 0.9241 | 0.9468 | 0.9728 | 0.9791 | 0.9603 | 0.9012 | 0.9681 | 0.9288 | 0.9419 | 0.9317 | 0.9532 | 0.9117 | 0.9705 | 0.9569 | 0.9647 | 0.9473 | 0.9586 |
Lipid Particles | 0.0085 | 0.0233 | 0.0068 | 0.0008 | 0.0016 | 0.0013 | 0.0164 | 0.0032 | 0.0077 | 0.0155 | 0.0038 | 0.0026 | 0.011 | 0.0061 | 0.0076 | 0.0031 | 0.0112 | 0.003 |
Mitochondria | 0.0032 | 0.0006 | 0.0011 | 0.0001 | 0.0002 | 0.0002 | 0.0073 | 0.0006 | 0.0004 | 0.0003 | 0.0179 | 0.0018 | 0.0051 | 0.0002 | 0.0017 | 0.0003 | 0.0001 | 0.0002 |
None | 0.0001 | 0.0003 | 0 | 0 | 0 | 0 | 0.0002 | 0 | 0.0004 | 0 | 0.0061 | 0 | 0.0017 | 0 | 0 | 0 | 0 | 0 |
Nuclear Periphery | 0.0026 | 0.0019 | 0.0012 | 0.0003 | 0.0002 | 0.0007 | 0.0041 | 0.0006 | 0.0011 | 0.0004 | 0.0063 | 0.0054 | 0.0014 | 0.0005 | 0.0005 | 0.0008 | 0.001 | 0.0008 |
Nucleolus | 0 | 0.0005 | 0 | 0 | 0 | 0 | 0.0001 | 0 | 0 | 0 | 0.0002 | 0 | 0.0003 | 0 | 0 | 0 | 0 | 0 |
Nucleus | 0.0001 | 0.0003 | 0 | 0 | 0 | 0 | 0.0002 | 0 | 0.0001 | 0 | 0.0006 | 0 | 0.0003 | 0 | 0 | 0 | 0 | 0 |
Peroxisomes | 0.0002 | 0.0001 | 0 | 0 | 0 | 0 | 0.0006 | 0 | 0.0007 | 0 | 0.0002 | 0 | 0.0003 | 0 | 0 | 0 | 0 | 0 |
Punctate Nuclear | 0.0001 | 0.0002 | 0 | 0 | 0 | 0 | 0.0001 | 0 | 0.0013 | 0 | 0.0008 | 0 | 0.0003 | 0 | 0 | 0 | 0 | 0 |
Vacuole | 0.0002 | 0.0016 | 0.0001 | 0 | 0 | 0.0001 | 0.0005 | 0.0001 | 0.0001 | 0.0001 | 0.0008 | 0.0001 | 0.0003 | 0 | 0.0001 | 0.0001 | 0.0001 | 0 |
Vacuole Periphery | 0.0014 | 0.0022 | 0.001 | 0.0002 | 0.0003 | 0.0005 | 0.0053 | 0.0003 | 0.0004 | 0.0003 | 0.0023 | 0.0009 | 0.0019 | 0.0006 | 0.0005 | 0.001 | 0.0004 | 0.0004 |
R1 | R2 | |||||||||
---|---|---|---|---|---|---|---|---|---|---|
G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | |
Gene Expression | 165.3872 | 130.1928 | 146.5505 | 139.3269 | 140.0208 | 152.9602 | 122.7132 | 129.8818 | 150.1365 | 141.2099 |
Translational Efficiency | 1.3475 | 1.6724 | 1.5306 | 1.8491 | 1.5999 | 1.6497 | 1.9263 | 1.6393 | 1.5773 | 1.5013 |
Dataset | Hit |
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Protein Concentration | ✘ |
Protein Localization | ✘ |
Gene Expression | ✘ |
Translational Efficiency | ✘ |
Temp | Actin Patch (Sac6-tdTomato) | Cortical Patch (Sla1-GFP) | Late Endosome (Snf7-GFP) | Vacuole (Vph1-GFP) |
---|---|---|---|---|
37℃ | ||||
RT |
Gene / Allele | Actin Patch (Sac6-tdTomato) | Cortical Patch (Sla1-GFP) | Late Endosome (Snf7-GFP) | Vacuole (Sac6-tdTomato) |
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Gene | Images |
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Gene | Images |
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