Standard name | |
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Human Ortholog | |
Description | Rab family GTPase; required for endosome-to-Golgi, intra-Golgi retrograde, and retrograde Golgi-to-ER transport; temporarily at the Golgi, dissociating into the cytosol on arrival of the late Golgi GTPase Ypt32p; Golgi-localized form is GTP bound, while cytosolic form is GDP-bound; required for delivery of Atg9p to the phagophore assembly site during autophagy under heat stress, with Ypt6p for starvation induced autophagy and for the CVT pathway; homolog of mammalian Rab6 |
ensLOC | DeepLoc | |||||||||||||||||||||||
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Localization | WT1 | WT2 | WT3 | RAP60 | RAP140 | RAP220 | RAP300 | RAP380 | RAP460 | RAP540 | RAP620 | RAP700 | HU80 | HU120 | HU160 | rpd3Δ_1 | rpd3Δ_2 | rpd3Δ_3 | WT1 | WT2 | WT3 | AF100 | AF140 | AF180 |
Cortical Patches | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 | – | – | 3 | 3 | 1 | 1 | 1 | 2 |
Bud | 0 | 3 | 0 | 1 | 1 | 3 | 6 | 7 | – | 9 | 7 | 9 | 1 | 0 | 0 | 0 | – | – | 1 | 0 | 1 | 1 | 1 | 6 |
Bud Neck | 1 | 2 | 3 | 1 | 1 | 6 | 4 | 1 | – | 3 | 4 | 1 | 2 | 1 | 3 | 3 | – | – | 1 | 1 | 0 | 3 | 4 | 1 |
Bud Site | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | – | 0 | 3 | 2 | 0 | 0 | 0 | 0 | – | – | – | – | – | – | – | – |
Cell Periphery | 0 | 4 | 2 | 2 | 1 | 1 | 2 | 1 | – | 2 | 2 | 1 | 3 | 7 | 0 | 1 | – | – | 1 | 4 | 2 | 0 | 2 | 1 |
Cytoplasm | 173 | 276 | 183 | 148 | 183 | 240 | 244 | 318 | – | 186 | 192 | 251 | 184 | 190 | 238 | 87 | – | – | 150 | 233 | 145 | 92 | 147 | 165 |
Endoplasmic Reticulum | 2 | 2 | 1 | 0 | 0 | 0 | 0 | 0 | – | 0 | 1 | 0 | 2 | 0 | 0 | 5 | – | – | 0 | 0 | 1 | 0 | 1 | 2 |
Endosome | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 1 | 3 | – | – | 2 | 1 | 2 | 1 | 1 | 2 |
Golgi | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 1 | 1 | 0 | – | – | 1 | 0 | 0 | 0 | 0 | 1 |
Mitochondria | 9 | 5 | 12 | 16 | 25 | 73 | 109 | 147 | – | 139 | 152 | 191 | 0 | 0 | 1 | 6 | – | – | 13 | 20 | 23 | 10 | 24 | 19 |
Nucleus | 0 | 0 | 0 | 0 | 1 | 2 | 4 | 4 | – | 1 | 2 | 0 | 1 | 0 | 1 | 1 | – | – | 0 | 0 | 0 | 0 | 0 | 1 |
Nuclear Periphery | 0 | 1 | 1 | 0 | 0 | 0 | 1 | 0 | – | 0 | 0 | 0 | 0 | 1 | 0 | 2 | – | – | 0 | 0 | 0 | 0 | 0 | 0 |
Nucleolus | 0 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | – | 0 | 1 | 0 | 0 | 0 | 0 | 0 | – | – | 0 | 0 | 0 | 0 | 0 | 0 |
Peroxisomes | 0 | 0 | 0 | 0 | 2 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 | – | – | 0 | 0 | 1 | 0 | 0 | 0 |
SpindlePole | 1 | 0 | 0 | 2 | 1 | 1 | 9 | 4 | – | 5 | 12 | 12 | 0 | 0 | 0 | 0 | – | – | 1 | 1 | 1 | 0 | 2 | 2 |
Vac/Vac Membrane | 0 | 1 | 0 | 0 | 0 | 0 | 1 | 1 | – | 1 | 2 | 2 | 0 | 1 | 0 | 0 | – | – | 1 | 3 | 2 | 6 | 6 | 8 |
Unique Cell Count | 181 | 283 | 190 | 152 | 195 | 272 | 302 | 385 | 287 | 276 | 358 | 189 | 192 | 242 | 92 | 184 | 280 | 190 | 123 | 198 | 221 | |||
Labelled Cell Count | 186 | 295 | 202 | 171 | 216 | 326 | 380 | 483 | 346 | 378 | 469 | 193 | 201 | 245 | 108 | 184 | 280 | 190 | 123 | 198 | 221 |
Screen | WT1 | WT2 | WT3 | RAP60 | RAP140 | RAP220 | RAP300 | RAP380 | RAP460 | RAP540 | RAP620 | RAP700 | HU80 | HU120 | HU160 | rpd3Δ_1 | rpd3Δ_2 | rpd3Δ_3 | AF100 | AF140 | AF180 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Mean Cell GFP Intensity (1e-4) | 3.7 | 3.5 | 3.2 | 3.4 | 3.4 | 3.2 | 2.9 | 2.8 | – | 2.5 | 2.5 | 2.3 | 4.6 | 4.6 | 4.6 | 4.9 | 4.7 | 4.8 | 4.6 | 5.1 | 5.1 |
Std Deviation (1e-4) | 1.0 | 0.5 | 1.1 | 1.9 | 2.0 | 1.8 | 2.2 | 1.5 | – | 1.3 | 1.4 | 0.9 | 0.9 | 1.2 | 1.2 | 1.2 | 1.3 | 1.2 | 0.7 | 1.5 | 1.3 |
Intensity Change (Log2) | – | – | – | 0.09 | 0.09 | -0.0 | -0.13 | -0.2 | – | -0.37 | -0.34 | -0.47 | 0.52 | 0.53 | 0.53 | 0.62 | 0.54 | 0.59 | 0.53 | 0.67 | 0.68 |
Localization | RAP60 | RAP140 | RAP220 | RAP300 | RAP380 | RAP460 | RAP540 | RAP620 | RAP700 | HU80 | HU120 | HU160 | rpd3Δ_1 | rpd3Δ_2 | rpd3Δ_3 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Actin | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – |
Bud | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – |
Bud Neck | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – |
Bud Site | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – |
Cell Periphery | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – |
Cyto | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – |
Endoplasmic Reticulum | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – |
Endosome | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – |
Golgi | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – |
Mitochondria | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – |
Nuclear Periphery | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – |
Nuc | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – |
Nucleolus | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – |
Peroxisomes | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – |
SpindlePole | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – |
Vac | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – |
Cortical Patches | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – |
Cytoplasm | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – |
Nucleus | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – |
Vacuole | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – |
R1 | R2 | R3 | ||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
G1 Pre-START | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | G1 Pre-START | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | G1 Pre-START | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | |
Concentration | -0.1733 | -0.3467 | -0.3587 | -0.6395 | -0.6535 | -0.3375 | 0.7503 | 0.9986 | 1.3134 | 0.939 | 0.6048 | 1.1891 | -1.8471 | -1.3355 | -1.7411 | -1.3297 | -1.8527 | -1.5763 |
Actin | 0.018 | 0.0002 | 0.0062 | 0.039 | 0.0232 | 0.006 | 0.0222 | 0.0002 | 0.0179 | 0.0344 | 0.0029 | 0.007 | 0.0011 | 0.0001 | 0.0001 | 0.0006 | 0.0001 | 0.0002 |
Bud | 0.0003 | 0.0018 | 0.0005 | 0.0005 | 0.0001 | 0.0012 | 0.0004 | 0.0001 | 0.0002 | 0.0002 | 0 | 0.0009 | 0.0005 | 0 | 0.0002 | 0.0004 | 0 | 0 |
Bud Neck | 0.0051 | 0.0003 | 0.0002 | 0.0001 | 0.0001 | 0.0068 | 0.0043 | 0 | 0.0012 | 0.0014 | 0.0001 | 0.0001 | 0.0003 | 0.0001 | 0.0001 | 0 | 0 | 0.0001 |
Bud Periphery | 0.0005 | 0.0011 | 0.0014 | 0.0008 | 0.0001 | 0.0015 | 0.0008 | 0.0002 | 0.0003 | 0.0005 | 0.0001 | 0.0038 | 0.0005 | 0 | 0.0002 | 0.0006 | 0.0001 | 0 |
Bud Site | 0.0081 | 0.0113 | 0.0019 | 0.0003 | 0.0001 | 0.0004 | 0.0026 | 0.0014 | 0.0007 | 0.0016 | 0.0001 | 0.0001 | 0.0011 | 0.0002 | 0.0002 | 0.0002 | 0 | 0 |
Cell Periphery | 0.0002 | 0.0003 | 0.0001 | 0.0001 | 0 | 0.0001 | 0.0006 | 0.0001 | 0.0001 | 0.0003 | 0 | 0.0001 | 0.0001 | 0.0001 | 0 | 0 | 0 | 0 |
Cytoplasm | 0.0135 | 0.0243 | 0.0123 | 0.0124 | 0.0294 | 0.0166 | 0.0273 | 0.0083 | 0.0237 | 0.0112 | 0.0115 | 0.014 | 0.0168 | 0.0076 | 0.0176 | 0.0086 | 0.0134 | 0.0186 |
Cytoplasmic Foci | 0.0045 | 0.0027 | 0.0043 | 0.0016 | 0.0077 | 0.0051 | 0.0117 | 0.0018 | 0.0041 | 0.0066 | 0.0154 | 0.0026 | 0.0045 | 0.0013 | 0.0059 | 0.003 | 0.0028 | 0.0021 |
Eisosomes | 0.0005 | 0.0001 | 0.0002 | 0.0001 | 0.0002 | 0.0002 | 0.0005 | 0.0002 | 0.0003 | 0.0008 | 0 | 0.0002 | 0.0005 | 0.0005 | 0.0005 | 0.0001 | 0.0001 | 0.0001 |
Endoplasmic Reticulum | 0.0022 | 0.0003 | 0.0009 | 0.0004 | 0.0005 | 0.0005 | 0.0026 | 0.0001 | 0.0005 | 0.0005 | 0.0001 | 0.003 | 0.0003 | 0.0001 | 0.0003 | 0.0003 | 0.0001 | 0.0001 |
Endosome | 0.0046 | 0.0003 | 0.0029 | 0.0128 | 0.0055 | 0.0024 | 0.0115 | 0 | 0.002 | 0.0019 | 0.0012 | 0.004 | 0.0011 | 0.0001 | 0.0006 | 0.0001 | 0.0003 | 0.0001 |
Golgi | 0.0019 | 0 | 0.0013 | 0.0055 | 0.0019 | 0.0019 | 0.0033 | 0 | 0.0013 | 0.0024 | 0.0012 | 0.0004 | 0.0003 | 0 | 0.0001 | 0 | 0 | 0 |
Lipid Particles | 0.0016 | 0.0001 | 0.0029 | 0.0005 | 0.0025 | 0.0008 | 0.0037 | 0.0001 | 0.0008 | 0.0076 | 0.0063 | 0.0003 | 0.0005 | 0.0003 | 0.0002 | 0.0001 | 0.0003 | 0.0001 |
Mitochondria | 0.0012 | 0.0002 | 0.001 | 0.0158 | 0.0006 | 0.0009 | 0.001 | 0.0001 | 0.0005 | 0.0009 | 0.0001 | 0.0004 | 0.0003 | 0.0004 | 0.0003 | 0.0005 | 0.0001 | 0.0001 |
None | 0.8974 | 0.9511 | 0.9496 | 0.9055 | 0.9102 | 0.9492 | 0.8809 | 0.9868 | 0.9331 | 0.9184 | 0.9202 | 0.9606 | 0.9657 | 0.9883 | 0.9638 | 0.9779 | 0.9819 | 0.9773 |
Nuclear Periphery | 0.0166 | 0.0002 | 0.004 | 0.0003 | 0.0026 | 0.0005 | 0.0081 | 0 | 0.002 | 0.0002 | 0.0004 | 0.0014 | 0.0006 | 0 | 0.0003 | 0.0013 | 0.0001 | 0.0001 |
Nucleolus | 0.0005 | 0.0004 | 0.0003 | 0.0001 | 0.0002 | 0.0004 | 0.0003 | 0.0001 | 0.0005 | 0.0003 | 0.0002 | 0 | 0.0005 | 0.0002 | 0.0005 | 0.0006 | 0.0001 | 0.0001 |
Nucleus | 0.014 | 0.0009 | 0.0026 | 0.0002 | 0.0005 | 0.0013 | 0.005 | 0.0001 | 0.0059 | 0.0002 | 0.0001 | 0.0002 | 0.0009 | 0.0001 | 0.0023 | 0.0017 | 0.0001 | 0.0002 |
Peroxisomes | 0.004 | 0.0001 | 0.0035 | 0.0006 | 0.0048 | 0.0013 | 0.0075 | 0.0001 | 0.0023 | 0.0094 | 0.0124 | 0.0004 | 0.0013 | 0.0003 | 0.0002 | 0.0002 | 0.0001 | 0.0001 |
Punctate Nuclear | 0.0043 | 0.0038 | 0.0036 | 0.0002 | 0.0095 | 0.0026 | 0.0021 | 0.0001 | 0.0016 | 0.0007 | 0.0277 | 0.0005 | 0.0026 | 0.0002 | 0.0061 | 0.0034 | 0.0003 | 0.0007 |
Vacuole | 0.0006 | 0.0003 | 0.0003 | 0.0015 | 0.0002 | 0.0002 | 0.003 | 0.0001 | 0.0006 | 0.0004 | 0 | 0.0001 | 0.0002 | 0.0001 | 0.0003 | 0.0002 | 0.0001 | 0 |
Vacuole Periphery | 0.0004 | 0 | 0.0002 | 0.0017 | 0.0002 | 0.0001 | 0.0005 | 0 | 0.0001 | 0.0001 | 0 | 0.0001 | 0.0001 | 0 | 0.0001 | 0.0001 | 0 | 0 |
R1 | R2 | |||||||||
---|---|---|---|---|---|---|---|---|---|---|
G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | |
Gene Expression | 33.2043 | 28.9215 | 32.7563 | 46.8119 | 17.6619 | 42.546 | 40.4009 | 44.148 | 39.583 | 43.8158 |
Translational Efficiency | 1.7957 | 2.588 | 1.802 | 1.2148 | 3.2874 | 1.5417 | 2.1127 | 1.6076 | 1.8915 | 1.7804 |
Dataset | Hit |
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Protein Concentration | ✘ |
Protein Localization | ✘ |
Gene Expression | ✘ |
Translational Efficiency | ✘ |
Temp | Actin Patch (Sac6-tdTomato) | Cortical Patch (Sla1-GFP) | Late Endosome (Snf7-GFP) | Vacuole (Vph1-GFP) |
---|---|---|---|---|
37℃ | ||||
RT |
Gene / Allele | Actin Patch (Sac6-tdTomato) | Cortical Patch (Sla1-GFP) | Late Endosome (Snf7-GFP) | Vacuole (Sac6-tdTomato) |
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Gene | Images |
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Gene | Images |
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