Standard name | |
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Human Ortholog | |
Description | Subunit of the heterodimeric FACT complex (Spt16p-Pob3p); FACT associates with chromatin via interaction with Nhp6Ap and Nhp6Bp, and reorganizes nucleosomes to facilitate access to DNA by RNA and DNA polymerases; protein abundance increases in response to DNA replication stress |
ensLOC | DeepLoc | |||||||||||||||||||||||
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Localization | WT1 | WT2 | WT3 | RAP60 | RAP140 | RAP220 | RAP300 | RAP380 | RAP460 | RAP540 | RAP620 | RAP700 | HU80 | HU120 | HU160 | rpd3Δ_1 | rpd3Δ_2 | rpd3Δ_3 | WT1 | WT2 | WT3 | AF100 | AF140 | AF180 |
Cortical Patches | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 |
Bud | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 3 | 0 | 4 | 0 | 0 | 6 | 1 | 0 | 0 | 0 | 0 | 0 | 2 | 3 | 4 | 7 | 25 |
Bud Neck | 0 | 1 | 0 | 0 | 1 | 1 | 0 | 0 | 3 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Bud Site | 0 | 0 | 0 | 0 | 2 | 2 | 19 | 16 | 17 | 10 | 6 | 8 | 6 | 14 | 16 | 0 | 0 | 1 | – | – | – | – | – | – |
Cell Periphery | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Cytoplasm | 6 | 3 | 4 | 5 | 5 | 5 | 10 | 10 | 11 | 5 | 7 | 5 | 72 | 92 | 102 | 49 | 50 | 30 | 0 | 0 | 0 | 0 | 0 | 2 |
Endoplasmic Reticulum | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 2 | 8 | 1 | 0 | 0 | 1 | 0 | 1 | 1 |
Endosome | 1 | 0 | 0 | 1 | 1 | 1 | 0 | 2 | 0 | 0 | 0 | 0 | 3 | 3 | 5 | 3 | 0 | 1 | 1 | 0 | 2 | 2 | 5 | 3 |
Golgi | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 1 | 1 | 0 | 0 | 0 | 2 | 2 | 0 | 1 |
Mitochondria | 3 | 5 | 4 | 7 | 11 | 11 | 45 | 40 | 58 | 67 | 29 | 33 | 1 | 1 | 1 | 2 | 4 | 10 | 1 | 0 | 2 | 3 | 7 | 0 |
Nucleus | 242 | 504 | 411 | 263 | 301 | 301 | 363 | 479 | 301 | 302 | 142 | 165 | 776 | 733 | 674 | 220 | 218 | 148 | 225 | 491 | 409 | 479 | 653 | 735 |
Nuclear Periphery | 0 | 0 | 1 | 0 | 0 | 0 | 9 | 3 | 5 | 13 | 0 | 3 | 0 | 2 | 1 | 1 | 0 | 0 | 0 | 1 | 0 | 0 | 1 | 0 |
Nucleolus | 74 | 141 | 144 | 71 | 135 | 135 | 260 | 403 | 262 | 262 | 164 | 190 | 145 | 147 | 125 | 19 | 29 | 24 | 32 | 43 | 64 | 135 | 160 | 89 |
Peroxisomes | 2 | 0 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 3 | 11 | 12 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
SpindlePole | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 1 | 1 | 0 | 2 | 0 | 22 | 49 | 54 | 2 | 2 | 1 | 0 | 1 | 1 | 2 | 8 | 8 |
Vac/Vac Membrane | 1 | 4 | 2 | 0 | 3 | 3 | 2 | 7 | 3 | 5 | 0 | 0 | 4 | 2 | 6 | 9 | 17 | 11 | 3 | 15 | 12 | 53 | 63 | 58 |
Unique Cell Count | 263 | 538 | 463 | 301 | 383 | 382 | 534 | 737 | 483 | 488 | 254 | 294 | 904 | 917 | 884 | 295 | 305 | 208 | 266 | 560 | 504 | 689 | 915 | 937 |
Labelled Cell Count | 329 | 658 | 568 | 349 | 459 | 459 | 708 | 964 | 661 | 668 | 350 | 404 | 1039 | 1058 | 996 | 309 | 331 | 227 | 266 | 560 | 504 | 689 | 915 | 937 |
Screen | WT1 | WT2 | WT3 | RAP60 | RAP140 | RAP220 | RAP300 | RAP380 | RAP460 | RAP540 | RAP620 | RAP700 | HU80 | HU120 | HU160 | rpd3Δ_1 | rpd3Δ_2 | rpd3Δ_3 | AF100 | AF140 | AF180 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Mean Cell GFP Intensity (1e-4) | 21.4 | 24.1 | 15.5 | 14.9 | 15.4 | 15.4 | 12.3 | 12.9 | 12.9 | 11.6 | 11.6 | 12.0 | 25.1 | 25.8 | 25.3 | 25.7 | 29.9 | 27.1 | 16.5 | 17.3 | 17.8 |
Std Deviation (1e-4) | 8.7 | 6.8 | 4.4 | 4.3 | 4.6 | 4.6 | 4.0 | 4.6 | 4.6 | 4.4 | 3.6 | 3.6 | 10.0 | 12.2 | 13.6 | 16.3 | 16.9 | 16.2 | 4.7 | 4.8 | 5.3 |
Intensity Change (Log2) | – | – | – | -0.05 | -0.01 | -0.01 | -0.34 | -0.26 | -0.27 | -0.41 | -0.42 | -0.36 | 0.7 | 0.74 | 0.71 | 0.73 | 0.95 | 0.81 | 0.09 | 0.16 | 0.21 |
Localization | RAP60 | RAP140 | RAP220 | RAP300 | RAP380 | RAP460 | RAP540 | RAP620 | RAP700 | HU80 | HU120 | HU160 | rpd3Δ_1 | rpd3Δ_2 | rpd3Δ_3 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Cortical Patches | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Bud | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Bud Neck | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Bud Site | 0 | 0 | 0 | 4.1 | 3.2 | 4.1 | 0 | 0 | 0 | 0 | 0 | 2.9 | 0 | 0 | 0 |
Cell Periphery | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Cytoplasm | 0 | 0 | 0 | 1.4 | 0.8 | 1.7 | 0 | 0 | 0 | 5.4 | 6.3 | 6.9 | 8.3 | 8.2 | 7.4 |
Endoplasmic Reticulum | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Endosome | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Golgi | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Mitochondria | 0 | 2.2 | 2.2 | 5.5 | 4.1 | 6.9 | 7.5 | 6.5 | 6.4 | 0 | 0 | 0 | 0 | 0 | 0 |
Nucleus | -0.6 | -4.0 | -4.0 | -7.9 | -9.2 | -9.4 | -9.6 | -10.0 | -10.3 | -1.5 | -4.1 | -5.5 | -5.1 | -6.1 | -5.7 |
Nuclear Periphery | 0 | 0 | 0 | 0 | 0 | 0 | 3.1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Nucleolus | -2.3 | 1.3 | 1.3 | 5.6 | 8.0 | 7.2 | 7.0 | 8.7 | 9.1 | -6.5 | -6.5 | -7.4 | -8.1 | -7.0 | -5.4 |
Peroxisomes | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
SpindlePole | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 3.0 | 4.8 | 5.2 | 0 | 0 | 0 |
Vacuole | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 4.5 | 0 |
R1 | R2 | R3 | ||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
G1 Pre-START | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | G1 Pre-START | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | G1 Pre-START | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | |
Concentration | 16.3694 | 21.5438 | 19.7702 | 19.3609 | 21.1461 | 20.3979 | 17.4783 | 21.6904 | 21.2355 | 19.9169 | 16.7542 | 19.686 | 19.0444 | 24.0203 | 21.856 | 18.6676 | 19.274 | 21.3575 |
Actin | 0.0285 | 0.001 | 0.0067 | 0 | 0.0002 | 0 | 0.0214 | 0 | 0.0049 | 0 | 0.0176 | 0 | 0.0088 | 0 | 0.0114 | 0.0426 | 0.0315 | 0 |
Bud | 0.0016 | 0.0004 | 0.0001 | 0 | 0.0001 | 0 | 0.0005 | 0 | 0.0005 | 0.0001 | 0.0009 | 0 | 0.0011 | 0 | 0.0001 | 0.0015 | 0.0006 | 0 |
Bud Neck | 0.0021 | 0.0001 | 0.001 | 0 | 0.0002 | 0.0001 | 0.0002 | 0 | 0.0001 | 0 | 0.0005 | 0.0002 | 0.0005 | 0 | 0.0001 | 0.0013 | 0.0002 | 0.0001 |
Bud Periphery | 0.0022 | 0.0003 | 0.0002 | 0 | 0.0002 | 0 | 0.0005 | 0 | 0.0005 | 0.0001 | 0.0011 | 0.0001 | 0.0013 | 0 | 0.0002 | 0.0011 | 0.0008 | 0 |
Bud Site | 0.0038 | 0.004 | 0.0053 | 0 | 0.0006 | 0 | 0.0009 | 0 | 0.0013 | 0 | 0.0013 | 0 | 0.0036 | 0.0001 | 0.0012 | 0.0107 | 0.0011 | 0 |
Cell Periphery | 0.0011 | 0.0001 | 0.0002 | 0 | 0.0004 | 0.0001 | 0.0001 | 0 | 0.0003 | 0.0002 | 0.0003 | 0.0001 | 0.0008 | 0.0002 | 0.0001 | 0.0004 | 0.0005 | 0.0001 |
Cytoplasm | 0.0148 | 0.0007 | 0.004 | 0 | 0.0002 | 0 | 0.0186 | 0 | 0.0005 | 0 | 0.0034 | 0.0001 | 0.0132 | 0.0001 | 0 | 0.005 | 0.0006 | 0 |
Cytoplasmic Foci | 0.0207 | 0.0006 | 0.0094 | 0 | 0.0097 | 0 | 0.0072 | 0 | 0.0038 | 0.001 | 0.0095 | 0.0017 | 0.0302 | 0.0047 | 0.0001 | 0.0126 | 0.0245 | 0 |
Eisosomes | 0.0008 | 0 | 0.0002 | 0 | 0.0001 | 0 | 0.0001 | 0 | 0.0001 | 0 | 0.0002 | 0 | 0.0002 | 0 | 0.0001 | 0.0004 | 0.0001 | 0 |
Endoplasmic Reticulum | 0.008 | 0.0001 | 0.0009 | 0 | 0.0001 | 0 | 0.0019 | 0 | 0.0001 | 0 | 0.004 | 0 | 0.0046 | 0 | 0 | 0.0006 | 0.0001 | 0 |
Endosome | 0.0382 | 0.0028 | 0.0042 | 0 | 0.0072 | 0 | 0.0145 | 0 | 0.0015 | 0 | 0.0157 | 0.0002 | 0.0242 | 0 | 0.0001 | 0.0053 | 0.0019 | 0 |
Golgi | 0.0096 | 0.0013 | 0.0017 | 0 | 0.0022 | 0 | 0.0093 | 0 | 0.0011 | 0 | 0.0033 | 0 | 0.0065 | 0 | 0.0002 | 0.0052 | 0.0048 | 0 |
Lipid Particles | 0.0132 | 0 | 0.0074 | 0 | 0.0256 | 0 | 0.0121 | 0 | 0.0014 | 0.0021 | 0.0059 | 0.0008 | 0.0172 | 0.0002 | 0.0001 | 0.0032 | 0.0047 | 0 |
Mitochondria | 0.036 | 0.0007 | 0.0141 | 0.0001 | 0.0528 | 0.0003 | 0.0057 | 0.0012 | 0.0154 | 0.0027 | 0.033 | 0.0002 | 0.0063 | 0.0005 | 0.0007 | 0.0104 | 0.0088 | 0.0003 |
None | 0.0134 | 0 | 0.0028 | 0 | 0.0004 | 0 | 0.0026 | 0 | 0.0005 | 0.0001 | 0.0018 | 0 | 0.0113 | 0.0001 | 0 | 0.0014 | 0.0012 | 0 |
Nuclear Periphery | 0.0074 | 0.0005 | 0.0017 | 0.0003 | 0.0013 | 0.0001 | 0.0252 | 0.0007 | 0.002 | 0.0004 | 0.0504 | 0.0008 | 0.0245 | 0.0005 | 0.001 | 0.0015 | 0.0014 | 0.0002 |
Nucleolus | 0.1289 | 0.0277 | 0.0319 | 0.0311 | 0.3444 | 0.1782 | 0.1026 | 0.0262 | 0.0406 | 0.0935 | 0.3222 | 0.1834 | 0.0991 | 0.0411 | 0.046 | 0.0711 | 0.2526 | 0.1476 |
Nucleus | 0.6112 | 0.9587 | 0.8997 | 0.9683 | 0.5396 | 0.8209 | 0.6938 | 0.9712 | 0.9202 | 0.8972 | 0.4945 | 0.7998 | 0.7047 | 0.9491 | 0.9381 | 0.8081 | 0.629 | 0.8508 |
Peroxisomes | 0.0058 | 0 | 0.0025 | 0 | 0.0091 | 0 | 0.0033 | 0 | 0.0011 | 0.0001 | 0.0014 | 0 | 0.0073 | 0 | 0.0002 | 0.0137 | 0.0196 | 0 |
Punctate Nuclear | 0.0411 | 0.0001 | 0.0026 | 0 | 0.0006 | 0.0001 | 0.0705 | 0 | 0.0011 | 0.0002 | 0.0257 | 0.0122 | 0.028 | 0.003 | 0 | 0.0019 | 0.0067 | 0.0007 |
Vacuole | 0.0087 | 0.0007 | 0.0013 | 0 | 0.0031 | 0.0001 | 0.0075 | 0.0001 | 0.001 | 0.0006 | 0.0023 | 0.0002 | 0.0034 | 0.0002 | 0.0001 | 0.0009 | 0.0035 | 0.0001 |
Vacuole Periphery | 0.0029 | 0.0002 | 0.0019 | 0 | 0.0019 | 0.0001 | 0.0017 | 0.0003 | 0.0021 | 0.0016 | 0.0052 | 0.0002 | 0.0031 | 0.0001 | 0.0002 | 0.0013 | 0.0057 | 0.0001 |
R1 | R2 | |||||||||
---|---|---|---|---|---|---|---|---|---|---|
G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | |
Gene Expression | 46.8897 | 26.7552 | 37.9423 | 53.8081 | 59.0699 | 45.8666 | 45.2373 | 46.2546 | 53.0544 | 65.3456 |
Translational Efficiency | 3.4886 | 3.7985 | 2.1457 | 1.9238 | 2.2266 | 3.6317 | 2.0699 | 1.7358 | 1.7895 | 1.7953 |
Dataset | Hit |
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Protein Concentration | ✘ |
Protein Localization | ✘ |
Gene Expression | ✔ |
Translational Efficiency | ✔ |
Temp | Actin Patch (Sac6-tdTomato) | Cortical Patch (Sla1-GFP) | Late Endosome (Snf7-GFP) | Vacuole (Vph1-GFP) |
---|---|---|---|---|
37℃ | ||||
RT |
Gene / Allele | Actin Patch (Sac6-tdTomato) | Cortical Patch (Sla1-GFP) | Late Endosome (Snf7-GFP) | Vacuole (Sac6-tdTomato) |
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Gene | Images |
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Gene | Images |
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