Standard name | |
---|---|
Human Ortholog | |
Description | Member of the ChAPs family (Chs5p-Arf1p-binding proteins); members include Bch1p, Bch2p, Bud7p, and Chs6p; ChAPs family proteins form the exomer complex with Chs5p to mediate export of specific cargo proteins from the Golgi to the plasma membrane; interacts selectively with the activated, GTP-bound form of Arf1p; may interact with ribosomes; protein abundance increases and forms cytoplasmic foci in response to DNA replication stress |
ensLOC | DeepLoc | |||||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Localization | WT1 | WT2 | WT3 | RAP60 | RAP140 | RAP220 | RAP300 | RAP380 | RAP460 | RAP540 | RAP620 | RAP700 | HU80 | HU120 | HU160 | rpd3Δ_1 | rpd3Δ_2 | rpd3Δ_3 | WT1 | WT2 | WT3 | AF100 | AF140 | AF180 |
Cortical Patches | 73 | 73 | 156 | 79 | 92 | 39 | 90 | 70 | 56 | 60 | 76 | 117 | 19 | 11 | 13 | – | – | – | 31 | 26 | 23 | 22 | 26 | 34 |
Bud | 11 | 7 | 16 | 11 | 22 | 34 | 42 | 24 | 34 | 39 | 42 | 49 | 14 | 9 | 6 | – | – | – | 0 | 2 | 0 | 1 | 1 | 0 |
Bud Neck | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | – | – | – | 0 | 0 | 0 | 0 | 0 | 0 |
Bud Site | 0 | 0 | 0 | 0 | 0 | 2 | 3 | 2 | 5 | 7 | 5 | 2 | 0 | 0 | 0 | – | – | – | – | – | – | – | – | – |
Cell Periphery | 3 | 6 | 1 | 5 | 2 | 5 | 2 | 2 | 5 | 1 | 4 | 8 | 2 | 3 | 1 | – | – | – | 0 | 0 | 0 | 0 | 0 | 0 |
Cytoplasm | 8 | 23 | 20 | 22 | 19 | 13 | 10 | 14 | 15 | 22 | 29 | 17 | 14 | 16 | 18 | – | – | – | 0 | 5 | 2 | 2 | 0 | 1 |
Endoplasmic Reticulum | 14 | 52 | 29 | 13 | 14 | 14 | 21 | 7 | 17 | 11 | 36 | 40 | 21 | 12 | 11 | – | – | – | 2 | 5 | 2 | 1 | 3 | 1 |
Endosome | 40 | 30 | 56 | 44 | 58 | 121 | 97 | 90 | 59 | 77 | 66 | 145 | 15 | 49 | 43 | – | – | – | 77 | 81 | 159 | 33 | 29 | 26 |
Golgi | 200 | 164 | 293 | 238 | 163 | 136 | 138 | 138 | 73 | 68 | 65 | 127 | 161 | 228 | 207 | – | – | – | 244 | 212 | 345 | 141 | 197 | 200 |
Mitochondria | 177 | 127 | 74 | 106 | 132 | 300 | 358 | 174 | 403 | 428 | 366 | 267 | 111 | 63 | 91 | – | – | – | 11 | 22 | 29 | 9 | 12 | 6 |
Nucleus | 0 | 0 | 0 | 1 | 1 | 1 | 1 | 2 | 2 | 2 | 2 | 0 | 0 | 1 | 0 | – | – | – | 1 | 0 | 0 | 0 | 0 | 0 |
Nuclear Periphery | 0 | 0 | 1 | 1 | 0 | 2 | 6 | 3 | 8 | 4 | 5 | 6 | 1 | 1 | 1 | – | – | – | 1 | 0 | 1 | 0 | 0 | 0 |
Nucleolus | 3 | 2 | 4 | 1 | 8 | 14 | 34 | 50 | 31 | 32 | 40 | 51 | 0 | 11 | 9 | – | – | – | 0 | 0 | 0 | 0 | 0 | 0 |
Peroxisomes | 1 | 0 | 2 | 1 | 5 | 29 | 13 | 7 | 10 | 9 | 6 | 17 | 3 | 4 | 5 | – | – | – | 15 | 8 | 23 | 9 | 21 | 24 |
SpindlePole | 4 | 2 | 29 | 19 | 40 | 34 | 43 | 43 | 18 | 34 | 28 | 64 | 1 | 9 | 3 | – | – | – | 3 | 4 | 5 | 3 | 1 | 0 |
Vac/Vac Membrane | 13 | 23 | 36 | 14 | 14 | 38 | 21 | 42 | 18 | 27 | 38 | 52 | 12 | 21 | 14 | – | – | – | 6 | 14 | 7 | 2 | 0 | 0 |
Unique Cell Count | 333 | 329 | 480 | 358 | 382 | 544 | 581 | 488 | 539 | 612 | 594 | 664 | 273 | 348 | 312 | 401 | 387 | 605 | 230 | 299 | 297 | |||
Labelled Cell Count | 547 | 509 | 717 | 555 | 571 | 782 | 879 | 668 | 754 | 821 | 809 | 962 | 374 | 438 | 422 | 401 | 387 | 605 | 230 | 299 | 297 |
Screen | WT1 | WT2 | WT3 | RAP60 | RAP140 | RAP220 | RAP300 | RAP380 | RAP460 | RAP540 | RAP620 | RAP700 | HU80 | HU120 | HU160 | rpd3Δ_1 | rpd3Δ_2 | rpd3Δ_3 | AF100 | AF140 | AF180 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Mean Cell GFP Intensity (1e-4) | 11.0 | 10.2 | 10.1 | 9.6 | 9.3 | 8.8 | 8.5 | 8.9 | 8.0 | 7.9 | 7.7 | 8.5 | 11.6 | 12.0 | 12.1 | – | – | – | 9.7 | 10.2 | 10.5 |
Std Deviation (1e-4) | 1.7 | 1.7 | 1.2 | 1.2 | 1.5 | 1.3 | 1.2 | 1.4 | 1.4 | 1.5 | 1.4 | 1.5 | 1.7 | 1.7 | 1.9 | – | – | – | 1.6 | 1.4 | 1.6 |
Intensity Change (Log2) | – | – | – | -0.06 | -0.12 | -0.2 | -0.24 | -0.18 | -0.33 | -0.36 | -0.38 | -0.24 | 0.21 | 0.26 | 0.26 | – | – | – | -0.05 | 0.02 | 0.06 |
Localization | RAP60 | RAP140 | RAP220 | RAP300 | RAP380 | RAP460 | RAP540 | RAP620 | RAP700 | HU80 | HU120 | HU160 | rpd3Δ_1 | rpd3Δ_2 | rpd3Δ_3 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Cortical Patches | -3.3 | -2.7 | -10.3 | -6.5 | -6.7 | -8.7 | -9.3 | -7.8 | -5.8 | -8.0 | -10.4 | -9.5 | – | – | – |
Bud | -0.2 | 1.7 | 2.2 | 2.8 | 1.2 | 2.2 | 2.3 | 2.7 | 2.9 | 1.2 | -0.6 | -1.2 | – | – | – |
Bud Neck | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | – | – | – |
Bud Site | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | – | – | – |
Cell Periphery | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | – | – | – |
Cytoplasm | 1.3 | 0.6 | -1.6 | -2.4 | -1.1 | -1.2 | -0.5 | 0.6 | -1.5 | 0.6 | 0.3 | 1.0 | – | – | – |
Endoplasmic Reticulum | -1.6 | -1.6 | -2.8 | -1.9 | -3.8 | -2.2 | -3.7 | 0 | 0 | 0.9 | -1.7 | -1.6 | – | – | – |
Endosome | 0.3 | 1.5 | 4.5 | 2.3 | 2.9 | -0.4 | 0.5 | -0.3 | 4.5 | -2.8 | 1.0 | 0.9 | – | – | – |
Golgi | 1.6 | -5.4 | -11.7 | -12.3 | -10.3 | -15.8 | -17.4 | -17.3 | -14.5 | -0.6 | 1.3 | 1.5 | – | – | – |
Mitochondria | 4.9 | 6.5 | 13.2 | 15.2 | 7.2 | 19.0 | 17.9 | 15.3 | 9.0 | 7.7 | 1.0 | 4.7 | – | – | – |
Nucleus | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | – | – | – |
Nuclear Periphery | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | – | – | – |
Nucleolus | 0 | 1.6 | 2.1 | 4.4 | 6.4 | 4.3 | 4.0 | 4.9 | 5.3 | 0 | 2.5 | 2.2 | – | – | – |
Peroxisomes | 0 | 0 | 4.6 | 2.5 | 0 | 2.1 | 0 | 0 | 2.8 | 0 | 0 | 0 | – | – | – |
SpindlePole | -0.5 | 2.4 | 0.1 | 0.9 | 1.6 | -2.1 | -0.3 | -1.0 | 2.2 | -3.8 | -2.3 | -3.5 | – | – | – |
Vacuole | -2.2 | -2.4 | -0.3 | -2.8 | 0.6 | -3.0 | -2.2 | -0.7 | 0.2 | -1.7 | -0.8 | -1.7 | – | – | – |
R1 | R2 | R3 | ||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
G1 Pre-START | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | G1 Pre-START | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | G1 Pre-START | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | |
Concentration | 5.7304 | 7.7774 | 7.0218 | 6.6468 | 5.7725 | 6.4576 | 8.3015 | 9.9889 | 9.0251 | 9.0616 | 8.5232 | 9.4413 | 7.2186 | 9.2846 | 8.6351 | 7.7728 | 8.2601 | 8.5175 |
Actin | 0.047 | 0.0115 | 0.009 | 0.0026 | 0.0301 | 0.0202 | 0.0426 | 0.0105 | 0.0137 | 0.0015 | 0.0015 | 0.0071 | 0.0488 | 0.0321 | 0.0286 | 0.0047 | 0.0145 | 0.0156 |
Bud | 0.0004 | 0.0008 | 0.0004 | 0.0001 | 0.0008 | 0.0005 | 0.0003 | 0.0003 | 0.0002 | 0.0001 | 0.0001 | 0.0001 | 0.0006 | 0.0005 | 0.0018 | 0.0001 | 0.0017 | 0.0001 |
Bud Neck | 0.0013 | 0.0005 | 0.0005 | 0.0003 | 0.0014 | 0.0009 | 0.0008 | 0.0003 | 0.0004 | 0.0002 | 0.0001 | 0.0002 | 0.002 | 0.0006 | 0.0006 | 0.0003 | 0.0012 | 0.0004 |
Bud Periphery | 0.0005 | 0.0005 | 0.0002 | 0.0001 | 0.0007 | 0.0005 | 0.0004 | 0.0001 | 0.0001 | 0.0001 | 0 | 0 | 0.0005 | 0.0002 | 0.0019 | 0.0001 | 0.0038 | 0.0001 |
Bud Site | 0.0019 | 0.0071 | 0.0014 | 0.0003 | 0.0018 | 0.0005 | 0.0021 | 0.0006 | 0.0003 | 0.0001 | 0.0001 | 0.0001 | 0.0047 | 0.0027 | 0.0017 | 0.0002 | 0.0027 | 0.0002 |
Cell Periphery | 0.0002 | 0.0001 | 0.0001 | 0.0001 | 0.0001 | 0.0001 | 0.0002 | 0 | 0 | 0 | 0 | 0 | 0.0002 | 0.0001 | 0.0001 | 0 | 0.0007 | 0 |
Cytoplasm | 0.0137 | 0.012 | 0.0045 | 0.0025 | 0.0047 | 0.0044 | 0.0037 | 0.0093 | 0.0041 | 0.0024 | 0.0092 | 0.002 | 0.0068 | 0.0217 | 0.0243 | 0.0029 | 0.0036 | 0.0021 |
Cytoplasmic Foci | 0.1207 | 0.1963 | 0.1583 | 0.1303 | 0.1214 | 0.0973 | 0.1299 | 0.1901 | 0.1455 | 0.0852 | 0.12 | 0.0994 | 0.1362 | 0.1969 | 0.1442 | 0.1006 | 0.1086 | 0.0864 |
Eisosomes | 0.0007 | 0 | 0 | 0 | 0.0001 | 0.0001 | 0.0004 | 0 | 0 | 0 | 0 | 0 | 0.0002 | 0 | 0 | 0 | 0.0001 | 0 |
Endoplasmic Reticulum | 0.0039 | 0.0003 | 0.0009 | 0.0004 | 0.0012 | 0.0023 | 0.0016 | 0.0003 | 0.0003 | 0.0004 | 0.0003 | 0.0003 | 0.0051 | 0.0012 | 0.0027 | 0.0004 | 0.0017 | 0.0009 |
Endosome | 0.2349 | 0.2323 | 0.2556 | 0.3432 | 0.2584 | 0.1878 | 0.2211 | 0.2476 | 0.1977 | 0.2554 | 0.2395 | 0.1382 | 0.2372 | 0.2694 | 0.2557 | 0.3243 | 0.327 | 0.1762 |
Golgi | 0.4794 | 0.5024 | 0.5092 | 0.494 | 0.5115 | 0.6201 | 0.5435 | 0.5215 | 0.5975 | 0.6463 | 0.6196 | 0.7401 | 0.4224 | 0.4262 | 0.5125 | 0.553 | 0.4463 | 0.6884 |
Lipid Particles | 0.0258 | 0.0056 | 0.0154 | 0.0069 | 0.004 | 0.0248 | 0.0146 | 0.0021 | 0.0067 | 0.0018 | 0.0018 | 0.0016 | 0.0154 | 0.007 | 0.0025 | 0.0026 | 0.0169 | 0.0047 |
Mitochondria | 0.0188 | 0.0056 | 0.0132 | 0.0023 | 0.0515 | 0.0223 | 0.0107 | 0.0027 | 0.0047 | 0.0028 | 0.0008 | 0.0037 | 0.0271 | 0.0021 | 0.0043 | 0.0018 | 0.025 | 0.0041 |
None | 0.0087 | 0.0001 | 0.0001 | 0.0001 | 0.0001 | 0.0003 | 0.0012 | 0 | 0.0001 | 0 | 0 | 0.0001 | 0.002 | 0.0001 | 0.0003 | 0 | 0.0003 | 0.0002 |
Nuclear Periphery | 0.0078 | 0.0001 | 0.0031 | 0.0002 | 0.0003 | 0.0018 | 0.0035 | 0.0001 | 0.0002 | 0.0001 | 0.0001 | 0.0007 | 0.0087 | 0.0004 | 0.0011 | 0.0001 | 0.0019 | 0.0092 |
Nucleolus | 0.0036 | 0 | 0.0002 | 0.0002 | 0.0001 | 0.0001 | 0.0004 | 0 | 0 | 0 | 0 | 0 | 0.0011 | 0.0003 | 0 | 0 | 0.0004 | 0.0001 |
Nucleus | 0.0026 | 0.0001 | 0.0005 | 0.0001 | 0.0001 | 0.0003 | 0.0009 | 0 | 0.0001 | 0 | 0 | 0.0001 | 0.0031 | 0.0002 | 0.0024 | 0 | 0.0015 | 0.0007 |
Peroxisomes | 0.0144 | 0.0224 | 0.0209 | 0.0041 | 0.0065 | 0.0116 | 0.0135 | 0.0122 | 0.0259 | 0.001 | 0.0049 | 0.0046 | 0.0592 | 0.0275 | 0.0086 | 0.0045 | 0.0059 | 0.0053 |
Punctate Nuclear | 0.0097 | 0.0002 | 0.0025 | 0.0001 | 0.0003 | 0.0008 | 0.0057 | 0.0002 | 0.001 | 0.0001 | 0.0001 | 0.0007 | 0.0059 | 0.0004 | 0.0003 | 0.0001 | 0.0004 | 0.0032 |
Vacuole | 0.0017 | 0.0012 | 0.002 | 0.0099 | 0.0026 | 0.0016 | 0.0013 | 0.0009 | 0.0006 | 0.0012 | 0.0008 | 0.0004 | 0.0087 | 0.0085 | 0.004 | 0.0019 | 0.0256 | 0.0008 |
Vacuole Periphery | 0.0022 | 0.0009 | 0.002 | 0.0023 | 0.0023 | 0.0017 | 0.0014 | 0.0009 | 0.0008 | 0.0014 | 0.0009 | 0.0006 | 0.0041 | 0.0019 | 0.0022 | 0.0023 | 0.0102 | 0.0011 |
R1 | R2 | |||||||||
---|---|---|---|---|---|---|---|---|---|---|
G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | |
Gene Expression | 63.1604 | 33.5595 | 48.4591 | 65.2215 | 51.6336 | 46.1399 | 53.076 | 57.0997 | 56.9456 | 73.9282 |
Translational Efficiency | 0.8483 | 1.1547 | 0.8867 | 0.7943 | 0.8763 | 1.1585 | 0.9174 | 0.7271 | 0.8934 | 0.735 |
Dataset | Hit |
---|---|
Protein Concentration | ✘ |
Protein Localization | ✘ |
Gene Expression | ✘ |
Translational Efficiency | ✘ |
Temp | Actin Patch (Sac6-tdTomato) | Cortical Patch (Sla1-GFP) | Late Endosome (Snf7-GFP) | Vacuole (Vph1-GFP) |
---|---|---|---|---|
37℃ | ||||
RT |
Gene / Allele | Actin Patch (Sac6-tdTomato) | Cortical Patch (Sla1-GFP) | Late Endosome (Snf7-GFP) | Vacuole (Sac6-tdTomato) |
---|
Gene | Images |
---|
Gene | Images |
---|