Standard name | |
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Human Ortholog | |
Description | Translational activator for mRNAs with internal ribosome entry sites; associates with polysomes and binds to a specific subset of mRNAs; localizes to RNA processing bodies (P bodies) and to stress granules; may have a role in translation regulation under stress conditions; ortholog of human ZNF9/CNBP, a gene involved in myotonic dystrophy type 2 |
ensLOC | DeepLoc | |||||||||||||||||||||||
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Localization | WT1 | WT2 | WT3 | RAP60 | RAP140 | RAP220 | RAP300 | RAP380 | RAP460 | RAP540 | RAP620 | RAP700 | HU80 | HU120 | HU160 | rpd3Δ_1 | rpd3Δ_2 | rpd3Δ_3 | WT1 | WT2 | WT3 | AF100 | AF140 | AF180 |
Cortical Patches | 0 | 0 | 0 | 0 | 1 | 1 | – | 4 | 4 | 11 | 0 | 12 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Bud | 0 | 0 | 1 | 0 | 0 | 0 | – | 1 | 0 | 2 | 0 | 3 | 0 | 0 | 1 | 0 | 0 | 1 | 0 | 1 | 0 | 0 | 2 | 2 |
Bud Neck | 0 | 0 | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Bud Site | 0 | 0 | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | – | – | – | – | – | – |
Cell Periphery | 1 | 1 | 1 | 1 | 7 | 10 | – | 14 | 12 | 17 | 6 | 23 | 0 | 10 | 8 | 8 | 1 | 2 | 0 | 0 | 0 | 0 | 0 | 0 |
Cytoplasm | 400 | 188 | 167 | 142 | 222 | 310 | – | 356 | 206 | 323 | 191 | 269 | 151 | 381 | 499 | 281 | 205 | 200 | 384 | 182 | 153 | 142 | 275 | 355 |
Endoplasmic Reticulum | 1 | 2 | 1 | 1 | 5 | 9 | – | 37 | 20 | 66 | 21 | 51 | 0 | 2 | 4 | 9 | 8 | 9 | 0 | 2 | 1 | 3 | 2 | 4 |
Endosome | 0 | 0 | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Golgi | 0 | 0 | 0 | 0 | 0 | 0 | – | 1 | 1 | 8 | 2 | 7 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Mitochondria | 0 | 0 | 1 | 0 | 0 | 1 | – | 4 | 9 | 15 | 10 | 24 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 |
Nucleus | 0 | 0 | 0 | 0 | 0 | 0 | – | 0 | 2 | 2 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 1 | 2 |
Nuclear Periphery | 0 | 0 | 0 | 0 | 0 | 0 | – | 1 | 1 | 3 | 0 | 3 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Nucleolus | 0 | 0 | 0 | 0 | 0 | 0 | – | 1 | 2 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Peroxisomes | 0 | 0 | 0 | 0 | 0 | 0 | – | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
SpindlePole | 0 | 0 | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Vac/Vac Membrane | 0 | 1 | 0 | 0 | 0 | 1 | – | 5 | 4 | 17 | 1 | 3 | 1 | 0 | 1 | 1 | 0 | 2 | 0 | 0 | 0 | 0 | 6 | 5 |
Unique Cell Count | 401 | 190 | 167 | 143 | 228 | 323 | 414 | 243 | 436 | 222 | 355 | 151 | 383 | 501 | 283 | 206 | 202 | 391 | 191 | 160 | 153 | 296 | 376 | |
Labelled Cell Count | 402 | 192 | 171 | 144 | 235 | 332 | 424 | 262 | 465 | 231 | 396 | 152 | 393 | 513 | 299 | 215 | 215 | 391 | 191 | 160 | 153 | 296 | 376 |
Screen | WT1 | WT2 | WT3 | RAP60 | RAP140 | RAP220 | RAP300 | RAP380 | RAP460 | RAP540 | RAP620 | RAP700 | HU80 | HU120 | HU160 | rpd3Δ_1 | rpd3Δ_2 | rpd3Δ_3 | AF100 | AF140 | AF180 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Mean Cell GFP Intensity (1e-4) | 68.1 | 81.8 | 36.7 | 47.6 | 43.3 | 32.7 | – | 29.2 | 27.0 | 26.2 | 26.1 | 24.7 | 67.5 | 67.7 | 64.2 | 87.5 | 85.6 | 86.7 | 66.4 | 69.4 | 70.1 |
Std Deviation (1e-4) | 12.6 | 17.0 | 9.0 | 11.8 | 8.4 | 6.6 | – | 6.8 | 7.6 | 6.6 | 7.2 | 6.0 | 15.3 | 14.6 | 13.8 | 26.0 | 27.1 | 23.7 | 16.9 | 20.5 | 19.0 |
Intensity Change (Log2) | – | – | – | 0.38 | 0.24 | -0.17 | – | -0.33 | -0.44 | -0.49 | -0.49 | -0.57 | 0.88 | 0.88 | 0.81 | 1.25 | 1.22 | 1.24 | 0.86 | 0.92 | 0.93 |
Localization | RAP60 | RAP140 | RAP220 | RAP300 | RAP380 | RAP460 | RAP540 | RAP620 | RAP700 | HU80 | HU120 | HU160 | rpd3Δ_1 | rpd3Δ_2 | rpd3Δ_3 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Cortical Patches | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Bud | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Bud Neck | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Bud Site | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Cell Periphery | 0 | 0 | 0 | – | 0 | 2.5 | 0 | 0 | 3.0 | 0 | 0 | 0 | 0 | 0 | 0 |
Cytoplasm | -1.1 | -2.1 | -2.6 | – | -5.1 | -5.3 | -7.3 | -5.0 | -7.0 | 0 | -0.9 | -0.8 | -1.1 | -0.9 | -1.3 |
Endoplasmic Reticulum | 0 | 0 | 0 | – | 3.7 | 3.4 | 5.1 | 3.7 | 4.9 | 0 | 0 | 0 | 0 | 0 | 0 |
Endosome | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Golgi | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Mitochondria | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 3.1 | 0 | 0 | 0 | 0 | 0 | 0 |
Nucleus | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Nuclear Periphery | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Nucleolus | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Peroxisomes | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
SpindlePole | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Vacuole | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
R1 | R2 | R3 | ||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
G1 Pre-START | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | G1 Pre-START | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | G1 Pre-START | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | |
Concentration | 53.7253 | 65.4042 | 60.9704 | 57.1948 | 48.9921 | 58.8217 | 56.4684 | 72.2576 | 65.3228 | 63.6022 | 56.5655 | 60.5939 | 68.4076 | 83.4781 | 77.0548 | 73.8614 | 75.9977 | 71.8434 |
Actin | 0.0039 | 0.0006 | 0.0013 | 0.0002 | 0.0005 | 0.0008 | 0.0163 | 0.0001 | 0.0032 | 0.0002 | 0.0002 | 0.0398 | 0.0006 | 0 | 0.0002 | 0.0346 | 0 | 0.0004 |
Bud | 0.0003 | 0.0003 | 0.0002 | 0.0005 | 0.0007 | 0.0007 | 0.0011 | 0.0002 | 0.0005 | 0.0002 | 0 | 0.0005 | 0.0011 | 0 | 0.0002 | 0.0002 | 0 | 0.0001 |
Bud Neck | 0.0003 | 0.0002 | 0.0002 | 0.0005 | 0.0003 | 0.0009 | 0.0011 | 0.0001 | 0.0002 | 0.0002 | 0.0005 | 0.0017 | 0.0002 | 0.0001 | 0.0001 | 0.0003 | 0.0001 | 0.0002 |
Bud Periphery | 0.0003 | 0.0002 | 0.0002 | 0.0008 | 0.0005 | 0.0003 | 0.0007 | 0.0001 | 0.0006 | 0 | 0 | 0.0009 | 0.001 | 0 | 0.0001 | 0.0001 | 0 | 0.0002 |
Bud Site | 0.0004 | 0.0005 | 0.0003 | 0.0001 | 0.0007 | 0.0001 | 0.0035 | 0.0001 | 0.0007 | 0 | 0 | 0.0029 | 0.0003 | 0 | 0.0001 | 0.0005 | 0 | 0.0001 |
Cell Periphery | 0.0003 | 0.0005 | 0.0002 | 0.0007 | 0.0013 | 0.0001 | 0.0007 | 0.0001 | 0.0003 | 0 | 0 | 0.0004 | 0.0004 | 0 | 0.0001 | 0 | 0 | 0.0002 |
Cytoplasm | 0.8794 | 0.9901 | 0.9622 | 0.9277 | 0.8633 | 0.9376 | 0.8801 | 0.9886 | 0.973 | 0.986 | 0.8667 | 0.9155 | 0.9201 | 0.9983 | 0.9668 | 0.9429 | 0.9894 | 0.8649 |
Cytoplasmic Foci | 0.011 | 0.0006 | 0.0058 | 0.0011 | 0.0117 | 0.0032 | 0.0132 | 0.0017 | 0.0022 | 0.0011 | 0.0004 | 0.0028 | 0.0164 | 0.0001 | 0.0025 | 0.0015 | 0.0006 | 0.0107 |
Eisosomes | 0.0001 | 0 | 0 | 0 | 0.0001 | 0 | 0.0002 | 0 | 0.0001 | 0 | 0 | 0.001 | 0 | 0 | 0 | 0.0001 | 0 | 0 |
Endoplasmic Reticulum | 0.02 | 0.0029 | 0.0029 | 0.0131 | 0.0069 | 0.0104 | 0.0128 | 0.001 | 0.0028 | 0.0002 | 0.0026 | 0.0099 | 0.01 | 0.0003 | 0.003 | 0.0006 | 0.0063 | 0.0287 |
Endosome | 0.0074 | 0.0003 | 0.0041 | 0.0039 | 0.0117 | 0.0117 | 0.0131 | 0.0012 | 0.003 | 0.0016 | 0.0068 | 0.0063 | 0.0034 | 0.0001 | 0.0013 | 0.0011 | 0.0006 | 0.0038 |
Golgi | 0.0039 | 0.0001 | 0.0008 | 0.0001 | 0.0009 | 0.0009 | 0.0042 | 0.0001 | 0.0011 | 0 | 0.0001 | 0.0021 | 0.0005 | 0 | 0.0005 | 0.0007 | 0 | 0.0002 |
Lipid Particles | 0.0067 | 0.0001 | 0.0021 | 0.0006 | 0.0045 | 0.0001 | 0.0037 | 0.0006 | 0.0009 | 0 | 0.0001 | 0.0016 | 0.0062 | 0 | 0.0056 | 0.0006 | 0 | 0.0027 |
Mitochondria | 0.0048 | 0.0001 | 0.0014 | 0.0021 | 0.0146 | 0.0062 | 0.0043 | 0.0004 | 0.0034 | 0 | 0.0003 | 0.0049 | 0.0038 | 0 | 0.0072 | 0.0002 | 0 | 0.0044 |
None | 0.0037 | 0.0002 | 0.0004 | 0.0004 | 0.0076 | 0.0004 | 0.0026 | 0.0004 | 0.0008 | 0.0001 | 0.0003 | 0.0009 | 0.0032 | 0 | 0.0012 | 0.0001 | 0.0001 | 0.0051 |
Nuclear Periphery | 0.0178 | 0.0013 | 0.0036 | 0.0103 | 0.0041 | 0.003 | 0.0134 | 0.0006 | 0.0012 | 0.0008 | 0.0992 | 0.002 | 0.0083 | 0.0002 | 0.001 | 0.0023 | 0.0009 | 0.0169 |
Nucleolus | 0.0043 | 0 | 0.0001 | 0.0001 | 0.0091 | 0.0002 | 0.0008 | 0.0002 | 0.0004 | 0 | 0.0001 | 0.0001 | 0.0033 | 0 | 0.002 | 0 | 0 | 0.0057 |
Nucleus | 0.0104 | 0.0008 | 0.0019 | 0.005 | 0.0068 | 0.0027 | 0.0065 | 0.0007 | 0.0011 | 0.0013 | 0.0149 | 0.0017 | 0.0047 | 0.0004 | 0.0033 | 0.0015 | 0.0009 | 0.0363 |
Peroxisomes | 0.0024 | 0 | 0.0035 | 0 | 0.0008 | 0.0001 | 0.0017 | 0.0001 | 0.0003 | 0 | 0 | 0.001 | 0.0008 | 0 | 0.0009 | 0.0033 | 0 | 0.0002 |
Punctate Nuclear | 0.005 | 0.0001 | 0.0011 | 0.0001 | 0.0006 | 0.0001 | 0.0011 | 0.0001 | 0.0001 | 0 | 0.0016 | 0.0003 | 0.004 | 0 | 0.0006 | 0.0003 | 0 | 0.0036 |
Vacuole | 0.0115 | 0.0008 | 0.0056 | 0.0196 | 0.0311 | 0.0127 | 0.0143 | 0.0029 | 0.0028 | 0.0064 | 0.0039 | 0.0022 | 0.0083 | 0.0002 | 0.0023 | 0.0072 | 0.0008 | 0.0083 |
Vacuole Periphery | 0.0063 | 0.0001 | 0.0018 | 0.0134 | 0.0221 | 0.008 | 0.0045 | 0.0007 | 0.0014 | 0.0017 | 0.0022 | 0.0015 | 0.0035 | 0 | 0.001 | 0.0019 | 0.0002 | 0.0073 |
R1 | R2 | |||||||||
---|---|---|---|---|---|---|---|---|---|---|
G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | |
Gene Expression | 421.5387 | 441.9478 | 400.8208 | 323.3564 | 360.7496 | 381.9199 | 363.2029 | 313.98 | 303.4529 | 325.4371 |
Translational Efficiency | 2.5441 | 2.476 | 2.4158 | 2.2336 | 2.7358 | 2.8765 | 2.3054 | 2.8251 | 2.4712 | 2.7261 |
Dataset | Hit |
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Protein Concentration | ✔ |
Protein Localization | ✔ |
Gene Expression | ✔ |
Translational Efficiency | ✘ |
Temp | Actin Patch (Sac6-tdTomato) | Cortical Patch (Sla1-GFP) | Late Endosome (Snf7-GFP) | Vacuole (Vph1-GFP) |
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37℃ | ||||
RT |
Gene / Allele | Actin Patch (Sac6-tdTomato) | Cortical Patch (Sla1-GFP) | Late Endosome (Snf7-GFP) | Vacuole (Sac6-tdTomato) |
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Gene | Images |
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Gene | Images |
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