Standard name | |
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Human Ortholog | |
Description | Citrate synthase; catalyzes the condensation of acetyl coenzyme A and oxaloacetate to form citrate; the rate-limiting enzyme of the TCA cycle; nuclear encoded mitochondrial protein; CIT1 has a paralog, CIT2, that arose from the whole genome duplication |
ensLOC | DeepLoc | |||||||||||||||||||||||
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Localization | WT1 | WT2 | WT3 | RAP60 | RAP140 | RAP220 | RAP300 | RAP380 | RAP460 | RAP540 | RAP620 | RAP700 | HU80 | HU120 | HU160 | rpd3Δ_1 | rpd3Δ_2 | rpd3Δ_3 | WT1 | WT2 | WT3 | AF100 | AF140 | AF180 |
Cortical Patches | 0 | 1 | 0 | 0 | 3 | 2 | 1 | 3 | 1 | 0 | 0 | 0 | 2 | 5 | 1 | 0 | 3 | 3 | 1 | 1 | 1 | 2 | 2 | 18 |
Bud | 2 | 2 | 1 | 1 | 0 | 2 | 3 | 5 | 0 | 3 | 4 | 1 | 2 | 1 | 0 | 2 | 3 | 5 | 0 | 1 | 0 | 1 | 0 | 1 |
Bud Neck | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 |
Bud Site | 1 | 0 | 1 | 0 | 0 | 1 | 2 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 1 | – | – | – | – | – | – |
Cell Periphery | 1 | 6 | 0 | 4 | 0 | 0 | 0 | 2 | 1 | 1 | 1 | 0 | 8 | 14 | 7 | 14 | 19 | 9 | 0 | 0 | 0 | 0 | 0 | 0 |
Cytoplasm | 0 | 2 | 1 | 2 | 1 | 4 | 4 | 5 | 5 | 2 | 2 | 1 | 4 | 5 | 9 | 25 | 18 | 13 | 0 | 1 | 0 | 0 | 0 | 0 |
Endoplasmic Reticulum | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 1 | 0 | 2 | 0 | 1 | 3 | 1 | 4 | 4 | 6 | 0 | 0 | 0 | 0 | 1 | 2 |
Endosome | 1 | 3 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 6 | 7 | 7 | 20 | 6 | 14 | 3 | 4 | 2 | 7 | 7 | 6 |
Golgi | 0 | 9 | 0 | 3 | 7 | 0 | 4 | 2 | 1 | 1 | 1 | 1 | 26 | 44 | 58 | 54 | 97 | 40 | 4 | 17 | 4 | 12 | 20 | 34 |
Mitochondria | 145 | 170 | 78 | 118 | 131 | 229 | 300 | 341 | 220 | 240 | 199 | 203 | 201 | 314 | 245 | 17 | 26 | 12 | 125 | 148 | 65 | 106 | 178 | 204 |
Nucleus | 0 | 1 | 0 | 0 | 0 | 1 | 1 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 14 | 4 | 3 | 0 | 0 | 0 | 0 | 0 | 0 |
Nuclear Periphery | 7 | 11 | 2 | 2 | 6 | 8 | 14 | 14 | 8 | 10 | 6 | 1 | 1 | 3 | 1 | 17 | 7 | 4 | 1 | 0 | 1 | 2 | 0 | 3 |
Nucleolus | 15 | 6 | 4 | 5 | 12 | 32 | 54 | 46 | 37 | 41 | 21 | 25 | 3 | 2 | 4 | 17 | 9 | 11 | 1 | 0 | 0 | 1 | 3 | 1 |
Peroxisomes | 3 | 9 | 11 | 1 | 2 | 1 | 4 | 4 | 0 | 2 | 2 | 1 | 22 | 32 | 13 | 41 | 14 | 27 | 9 | 4 | 14 | 8 | 8 | 21 |
SpindlePole | 1 | 0 | 0 | 1 | 0 | 1 | 0 | 1 | 1 | 1 | 2 | 0 | 2 | 2 | 1 | 19 | 5 | 10 | 1 | 0 | 0 | 0 | 0 | 1 |
Vac/Vac Membrane | 11 | 34 | 3 | 1 | 5 | 6 | 8 | 3 | 7 | 9 | 2 | 1 | 9 | 25 | 54 | 35 | 48 | 33 | 2 | 13 | 0 | 2 | 6 | 13 |
Unique Cell Count | 151 | 184 | 81 | 120 | 138 | 240 | 334 | 354 | 231 | 250 | 213 | 208 | 219 | 359 | 318 | 234 | 216 | 151 | 151 | 195 | 92 | 144 | 233 | 312 |
Labelled Cell Count | 187 | 254 | 101 | 138 | 167 | 288 | 396 | 427 | 282 | 310 | 243 | 234 | 287 | 457 | 401 | 279 | 264 | 191 | 151 | 195 | 92 | 144 | 233 | 312 |
Screen | WT1 | WT2 | WT3 | RAP60 | RAP140 | RAP220 | RAP300 | RAP380 | RAP460 | RAP540 | RAP620 | RAP700 | HU80 | HU120 | HU160 | rpd3Δ_1 | rpd3Δ_2 | rpd3Δ_3 | AF100 | AF140 | AF180 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Mean Cell GFP Intensity (1e-4) | 9.0 | 10.3 | 9.3 | 12.4 | 23.0 | 23.6 | 23.6 | 25.5 | 26.4 | 27.6 | 27.4 | 33.0 | 13.3 | 13.7 | 14.1 | 10.9 | 13.1 | 11.9 | 8.9 | 10.3 | 11.9 |
Std Deviation (1e-4) | 2.2 | 3.0 | 3.3 | 3.3 | 6.6 | 8.3 | 10.0 | 10.4 | 11.5 | 12.6 | 13.6 | 16.2 | 4.8 | 4.2 | 4.1 | 4.2 | 4.2 | 4.8 | 3.0 | 3.3 | 3.6 |
Intensity Change (Log2) | – | – | – | 0.41 | 1.3 | 1.34 | 1.34 | 1.45 | 1.5 | 1.57 | 1.55 | 1.82 | 0.51 | 0.55 | 0.6 | 0.22 | 0.49 | 0.36 | -0.07 | 0.14 | 0.36 |
Localization | RAP60 | RAP140 | RAP220 | RAP300 | RAP380 | RAP460 | RAP540 | RAP620 | RAP700 | HU80 | HU120 | HU160 | rpd3Δ_1 | rpd3Δ_2 | rpd3Δ_3 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Cortical Patches | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Bud | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Bud Neck | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Bud Site | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Cell Periphery | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 2.8 | 0 |
Cytoplasm | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 2.7 | 2.2 | 0 |
Endoplasmic Reticulum | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Endosome | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 2.7 | 0 | 0 |
Golgi | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 3.2 | 3.3 | 4.2 | 4.7 | 7.3 | 5.1 |
Mitochondria | 0.9 | -0.5 | -0.3 | -1.8 | 0 | -0.4 | -0.1 | -0.9 | 0.6 | -1.4 | -2.3 | -3.9 | -15.0 | -13.6 | -13.2 |
Nucleus | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Nuclear Periphery | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Nucleolus | 0 | 1.0 | 2.1 | 2.6 | 2.1 | 2.5 | 2.6 | 1.4 | 1.8 | 0 | 0 | 0 | 0.7 | 0 | 0.7 |
Peroxisomes | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | -0.9 | -1.3 | 0 | 0.8 | -2.0 | 0.8 |
SpindlePole | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Vacuole | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1.1 | 3.0 | 2.7 | 3.8 | 3.6 |
R1 | R2 | R3 | ||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
G1 Pre-START | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | G1 Pre-START | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | G1 Pre-START | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | |
Concentration | 22.8834 | 41.9449 | 36.228 | 35.795 | 25.7828 | 37.6385 | 50.5137 | 47.9015 | 46.5719 | 39.8878 | 45.5067 | 46.5086 | 33.9131 | 60.1822 | 51.7433 | 56.8814 | 48.6877 | 51.0757 |
Actin | 0.0764 | 0.0069 | 0.0028 | 0.0062 | 0.0132 | 0.0057 | 0.0031 | 0.0031 | 0.0079 | 0.0167 | 0.0234 | 0.0011 | 0.0374 | 0.0024 | 0.0039 | 0.0002 | 0.0692 | 0.0005 |
Bud | 0.0017 | 0.0003 | 0.0003 | 0.0002 | 0.0011 | 0.0002 | 0 | 0 | 0.0001 | 0.0006 | 0.0001 | 0 | 0.001 | 0.0001 | 0.0001 | 0 | 0.0003 | 0 |
Bud Neck | 0.002 | 0.0004 | 0.0002 | 0.0001 | 0.0005 | 0.0001 | 0 | 0 | 0.0002 | 0.0002 | 0 | 0 | 0.0004 | 0.0002 | 0.0002 | 0 | 0.0009 | 0 |
Bud Periphery | 0.0022 | 0.0005 | 0.0004 | 0.0004 | 0.0043 | 0.0004 | 0 | 0 | 0.0002 | 0.001 | 0.0001 | 0.0001 | 0.0011 | 0.0001 | 0.0002 | 0.0001 | 0.0005 | 0 |
Bud Site | 0.0108 | 0.0036 | 0.0014 | 0.0005 | 0.0006 | 0.0005 | 0.0002 | 0.0001 | 0.0028 | 0.0027 | 0.0003 | 0.0001 | 0.004 | 0.0009 | 0.0003 | 0 | 0.0009 | 0 |
Cell Periphery | 0.001 | 0.0016 | 0.0014 | 0.0001 | 0.0008 | 0.0001 | 0.0002 | 0.0002 | 0.0002 | 0.0001 | 0.0002 | 0.0002 | 0.0012 | 0.0023 | 0.0007 | 0.0001 | 0.0009 | 0.0001 |
Cytoplasm | 0.0034 | 0 | 0.0002 | 0.0032 | 0.0004 | 0.0002 | 0.0001 | 0 | 0.0001 | 0.0004 | 0.0003 | 0.0007 | 0.0044 | 0 | 0 | 0 | 0.0005 | 0 |
Cytoplasmic Foci | 0.0451 | 0.0008 | 0.0033 | 0.0082 | 0.0144 | 0.001 | 0.0058 | 0.0001 | 0.002 | 0.0018 | 0.0102 | 0.0037 | 0.0459 | 0.0001 | 0.0019 | 0 | 0.0062 | 0 |
Eisosomes | 0.0013 | 0.0045 | 0.0007 | 0.0006 | 0.0009 | 0.0002 | 0.0007 | 0.0013 | 0.0004 | 0.0003 | 0.0004 | 0.0003 | 0.0021 | 0.0111 | 0.0134 | 0.0001 | 0.001 | 0.0002 |
Endoplasmic Reticulum | 0.0045 | 0 | 0.0001 | 0.0012 | 0.0009 | 0.0008 | 0 | 0 | 0.0001 | 0.0019 | 0.0002 | 0.0015 | 0.007 | 0 | 0 | 0 | 0.0022 | 0 |
Endosome | 0.0102 | 0.0013 | 0.0013 | 0.0053 | 0.0009 | 0.0074 | 0.0007 | 0.0003 | 0.0021 | 0.0093 | 0.0006 | 0.0014 | 0.0278 | 0.0003 | 0.0026 | 0.0001 | 0.0048 | 0 |
Golgi | 0.0081 | 0.0051 | 0.0025 | 0.0019 | 0.0004 | 0.0041 | 0.0011 | 0.0018 | 0.0014 | 0.004 | 0.0015 | 0.0054 | 0.0125 | 0.0004 | 0.0201 | 0.0001 | 0.0075 | 0.0001 |
Lipid Particles | 0.0661 | 0.0151 | 0.0087 | 0.0021 | 0.0119 | 0.0046 | 0.0135 | 0.0032 | 0.0107 | 0.0055 | 0.0064 | 0.0044 | 0.0526 | 0.0025 | 0.0092 | 0.0007 | 0.0109 | 0.0019 |
Mitochondria | 0.5436 | 0.9218 | 0.8988 | 0.9179 | 0.7925 | 0.9541 | 0.9413 | 0.976 | 0.9476 | 0.937 | 0.9451 | 0.9666 | 0.6156 | 0.9414 | 0.9001 | 0.9962 | 0.8051 | 0.9925 |
None | 0.0167 | 0 | 0.0003 | 0.0011 | 0.0012 | 0.0001 | 0.0061 | 0 | 0.0002 | 0.001 | 0.0006 | 0.0004 | 0.0125 | 0 | 0 | 0 | 0.0007 | 0 |
Nuclear Periphery | 0.0368 | 0.0002 | 0.0003 | 0.0094 | 0.0557 | 0.0019 | 0.0003 | 0 | 0.0003 | 0.0094 | 0.0001 | 0.0005 | 0.0187 | 0.0001 | 0.0001 | 0 | 0.0009 | 0 |
Nucleolus | 0.0482 | 0.0053 | 0.0062 | 0.0003 | 0.0452 | 0.0002 | 0.0019 | 0.0006 | 0.0014 | 0.0004 | 0.0054 | 0.0023 | 0.0508 | 0.002 | 0.0039 | 0.0001 | 0.0628 | 0.0002 |
Nucleus | 0.0632 | 0.0005 | 0.0199 | 0.0032 | 0.0196 | 0.0004 | 0.0005 | 0.0001 | 0.0005 | 0.0012 | 0.0003 | 0.0004 | 0.008 | 0.0003 | 0.0003 | 0 | 0.0016 | 0 |
Peroxisomes | 0.0192 | 0.0061 | 0.0049 | 0.0017 | 0.006 | 0.0011 | 0.0118 | 0.0019 | 0.0068 | 0.0019 | 0.0019 | 0.0007 | 0.0343 | 0.0025 | 0.005 | 0.0003 | 0.0025 | 0.0006 |
Punctate Nuclear | 0.0244 | 0 | 0.0249 | 0.0341 | 0.0013 | 0.0004 | 0.0009 | 0 | 0.0005 | 0.0024 | 0.0002 | 0.0001 | 0.0195 | 0 | 0 | 0 | 0.0004 | 0 |
Vacuole | 0.0043 | 0.0051 | 0.0056 | 0.0004 | 0.0055 | 0.0012 | 0.0016 | 0.0011 | 0.0021 | 0.0008 | 0.0005 | 0.0011 | 0.008 | 0.0056 | 0.0055 | 0.0003 | 0.003 | 0.0004 |
Vacuole Periphery | 0.0108 | 0.0207 | 0.0159 | 0.0018 | 0.0228 | 0.0153 | 0.01 | 0.01 | 0.0124 | 0.0012 | 0.0022 | 0.0091 | 0.0354 | 0.0279 | 0.0324 | 0.0017 | 0.0173 | 0.0034 |
R1 | R2 | |||||||||
---|---|---|---|---|---|---|---|---|---|---|
G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | |
Gene Expression | 168.5757 | 98.6376 | 96.5746 | 171.1733 | 109.2829 | 178.4381 | 170.3762 | 164.0746 | 183.0034 | 157.2073 |
Translational Efficiency | 1.5082 | 1.8302 | 1.4466 | 1.6086 | 1.4926 | 2.0086 | 1.6471 | 1.445 | 1.4744 | 1.3568 |
Dataset | Hit |
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Protein Concentration | ✘ |
Protein Localization | ✘ |
Gene Expression | ✘ |
Translational Efficiency | ✘ |
Temp | Actin Patch (Sac6-tdTomato) | Cortical Patch (Sla1-GFP) | Late Endosome (Snf7-GFP) | Vacuole (Vph1-GFP) |
---|---|---|---|---|
37℃ | ||||
RT |
Gene / Allele | Actin Patch (Sac6-tdTomato) | Cortical Patch (Sla1-GFP) | Late Endosome (Snf7-GFP) | Vacuole (Sac6-tdTomato) |
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Gene | Images |
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Gene | Images |
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