Standard name | |
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Human Ortholog | |
Description | Cytoplasmic malate dehydrogenase; one of three isozymes that catalyze interconversion of malate and oxaloacetate; involved in the glyoxylate cycle and gluconeogenesis during growth on two-carbon compounds; interacts with Pck1p and Fbp1 |
ensLOC | DeepLoc | |||||||||||||||||||||||
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Localization | WT1 | WT2 | WT3 | RAP60 | RAP140 | RAP220 | RAP300 | RAP380 | RAP460 | RAP540 | RAP620 | RAP700 | HU80 | HU120 | HU160 | rpd3Δ_1 | rpd3Δ_2 | rpd3Δ_3 | WT1 | WT2 | WT3 | AF100 | AF140 | AF180 |
Cortical Patches | 1 | 12 | 12 | 15 | 40 | 35 | 65 | 28 | 45 | 58 | 22 | 37 | 19 | 26 | 12 | 5 | 5 | 5 | 4 | 15 | 7 | 13 | 21 | 39 |
Bud | 22 | 17 | 39 | 36 | 64 | 89 | 124 | 110 | 89 | 110 | 84 | 81 | 22 | 22 | 13 | 10 | 8 | 8 | 2 | 7 | 7 | 7 | 9 | 7 |
Bud Neck | 0 | 1 | 3 | 5 | 0 | 3 | 2 | 1 | 2 | 2 | 2 | 1 | 1 | 1 | 1 | 1 | 3 | 0 | 2 | 4 | 4 | 6 | 5 | 2 |
Bud Site | 27 | 14 | 18 | 10 | 19 | 40 | 51 | 22 | 34 | 27 | 28 | 34 | 8 | 4 | 3 | 8 | 7 | 12 | – | – | – | – | – | – |
Cell Periphery | 0 | 1 | 0 | 0 | 0 | 2 | 3 | 4 | 6 | 7 | 3 | 2 | 1 | 0 | 2 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Cytoplasm | 2 | 3 | 9 | 3 | 20 | 5 | 15 | 22 | 8 | 15 | 7 | 7 | 6 | 12 | 10 | 12 | 4 | 13 | 0 | 0 | 0 | 2 | 0 | 3 |
Endoplasmic Reticulum | 0 | 0 | 0 | 0 | 4 | 1 | 0 | 0 | 0 | 0 | 0 | 2 | 3 | 0 | 0 | 4 | 1 | 1 | 0 | 0 | 1 | 1 | 1 | 1 |
Endosome | 11 | 21 | 24 | 30 | 104 | 60 | 72 | 92 | 47 | 53 | 32 | 32 | 15 | 25 | 43 | 46 | 41 | 31 | 25 | 32 | 21 | 27 | 52 | 25 |
Golgi | 0 | 0 | 0 | 0 | 10 | 3 | 0 | 2 | 2 | 0 | 0 | 1 | 3 | 8 | 4 | 10 | 8 | 1 | 4 | 7 | 5 | 6 | 6 | 10 |
Mitochondria | 101 | 116 | 58 | 71 | 46 | 105 | 187 | 121 | 175 | 188 | 271 | 223 | 24 | 27 | 36 | 20 | 26 | 16 | 2 | 8 | 1 | 6 | 10 | 5 |
Nucleus | 2 | 2 | 1 | 1 | 0 | 2 | 2 | 6 | 0 | 1 | 1 | 1 | 2 | 0 | 2 | 1 | 2 | 3 | 1 | 0 | 0 | 1 | 0 | 0 |
Nuclear Periphery | 2 | 1 | 0 | 0 | 0 | 2 | 0 | 1 | 1 | 2 | 3 | 3 | 0 | 0 | 0 | 2 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Nucleolus | 10 | 18 | 4 | 10 | 20 | 27 | 32 | 22 | 23 | 26 | 23 | 29 | 10 | 10 | 10 | 19 | 18 | 15 | 1 | 0 | 0 | 2 | 0 | 0 |
Peroxisomes | 180 | 135 | 249 | 213 | 244 | 333 | 395 | 397 | 298 | 332 | 224 | 292 | 154 | 175 | 225 | 146 | 142 | 109 | 200 | 156 | 259 | 128 | 209 | 293 |
SpindlePole | 92 | 44 | 181 | 110 | 122 | 151 | 200 | 213 | 142 | 122 | 85 | 106 | 91 | 102 | 122 | 96 | 104 | 75 | 34 | 35 | 47 | 48 | 49 | 21 |
Vac/Vac Membrane | 0 | 2 | 0 | 3 | 4 | 2 | 5 | 18 | 6 | 10 | 8 | 9 | 1 | 1 | 3 | 3 | 3 | 5 | 0 | 2 | 0 | 0 | 2 | 3 |
Unique Cell Count | 267 | 245 | 358 | 292 | 422 | 507 | 693 | 650 | 509 | 567 | 505 | 537 | 245 | 274 | 324 | 255 | 253 | 188 | 281 | 277 | 358 | 257 | 375 | 421 |
Labelled Cell Count | 450 | 387 | 598 | 507 | 697 | 860 | 1153 | 1059 | 878 | 953 | 793 | 860 | 360 | 413 | 486 | 384 | 373 | 294 | 281 | 277 | 358 | 257 | 375 | 421 |
Screen | WT1 | WT2 | WT3 | RAP60 | RAP140 | RAP220 | RAP300 | RAP380 | RAP460 | RAP540 | RAP620 | RAP700 | HU80 | HU120 | HU160 | rpd3Δ_1 | rpd3Δ_2 | rpd3Δ_3 | AF100 | AF140 | AF180 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Mean Cell GFP Intensity (1e-4) | 5.5 | 7.1 | 6.0 | 6.7 | 9.5 | 8.1 | 7.3 | 7.7 | 7.6 | 7.9 | 7.1 | 7.5 | 9.1 | 9.7 | 10.3 | 10.5 | 10.0 | 9.3 | 8.6 | 8.3 | 8.5 |
Std Deviation (1e-4) | 1.0 | 1.5 | 1.4 | 1.5 | 2.5 | 2.2 | 1.9 | 2.1 | 2.2 | 2.4 | 2.1 | 2.4 | 2.1 | 2.4 | 3.1 | 3.0 | 3.1 | 2.4 | 2.7 | 2.2 | 2.4 |
Intensity Change (Log2) | – | – | – | 0.17 | 0.65 | 0.43 | 0.28 | 0.36 | 0.33 | 0.39 | 0.24 | 0.31 | 0.6 | 0.68 | 0.77 | 0.8 | 0.74 | 0.63 | 0.52 | 0.47 | 0.49 |
Localization | RAP60 | RAP140 | RAP220 | RAP300 | RAP380 | RAP460 | RAP540 | RAP620 | RAP700 | HU80 | HU120 | HU160 | rpd3Δ_1 | rpd3Δ_2 | rpd3Δ_3 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Cortical Patches | 1.1 | 3.4 | 2.3 | 3.6 | 0.7 | 3.2 | 3.9 | 0.7 | 2.3 | 2.4 | 3.2 | 0.2 | -1.0 | -1.0 | -0.4 |
Bud | 0.6 | 1.8 | 2.7 | 3.0 | 2.6 | 2.7 | 3.4 | 2.4 | 1.8 | -0.8 | -1.2 | -3.4 | -3.1 | -3.5 | -2.6 |
Bud Neck | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Bud Site | -1.0 | -0.3 | 1.7 | 1.4 | -1.3 | 1.0 | -0.2 | 0.3 | 0.8 | -1.0 | -2.4 | -3.1 | -1.1 | -1.4 | 0.7 |
Cell Periphery | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Cytoplasm | -1.4 | 1.6 | -1.8 | -0.4 | 0.8 | -1.0 | 0.1 | -1.2 | -1.3 | -0.1 | 1.3 | 0.5 | 1.5 | -0.8 | 2.5 |
Endoplasmic Reticulum | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Endosome | 1.6 | 6.7 | 2.5 | 2.0 | 3.5 | 1.3 | 1.4 | -0.2 | -0.5 | -0.3 | 1.1 | 2.9 | 4.3 | 3.8 | 3.6 |
Golgi | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Mitochondria | 2.6 | -2.2 | 1.7 | 3.9 | 1.0 | 5.9 | 5.7 | 11.2 | 8.0 | -2.3 | -2.3 | -1.9 | -3.1 | -2.1 | -2.5 |
Nucleus | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Nuclear Periphery | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Nucleolus | 2.0 | 2.9 | 3.3 | 3.0 | 2.2 | 2.8 | 2.9 | 2.9 | 3.3 | 2.4 | 2.1 | 1.8 | 4.1 | 3.9 | 4.2 |
Peroxisomes | 0.9 | -3.4 | -1.2 | -4.0 | -2.7 | -3.3 | -3.4 | -7.3 | -4.5 | -1.7 | -1.5 | 0 | -3.1 | -3.4 | -2.7 |
SpindlePole | -3.3 | -6.2 | -6.2 | -6.9 | -5.5 | -6.8 | -9.2 | -10.6 | -9.7 | -3.3 | -3.3 | -3.4 | -3.2 | -2.3 | -2.4 |
Vacuole | 0 | 0 | 0 | 0 | 3.2 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
R1 | R2 | R3 | ||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
G1 Pre-START | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | G1 Pre-START | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | G1 Pre-START | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | |
Concentration | 6.8109 | 7.9354 | 7.891 | 7.0558 | 8.3726 | 7.9376 | 3.4306 | 5.1644 | 4.307 | 3.4433 | 4.0376 | 4.4724 | 3.8392 | 5.4795 | 4.8737 | 5.3389 | 4.0066 | 4.6555 |
Actin | 0.1042 | 0.0547 | 0.0957 | 0.017 | 0.0124 | 0.0034 | 0.0375 | 0.046 | 0.0616 | 0.0016 | 0.0296 | 0.0405 | 0.0212 | 0.032 | 0.0256 | 0.0019 | 0.0347 | 0.0353 |
Bud | 0.0004 | 0.0024 | 0.0009 | 0.0001 | 0.0001 | 0.0001 | 0.0013 | 0.0029 | 0.0026 | 0.0001 | 0.0005 | 0.0004 | 0.0002 | 0.003 | 0.0012 | 0 | 0.0032 | 0.0003 |
Bud Neck | 0.0023 | 0.008 | 0.0027 | 0.0006 | 0.0007 | 0.0003 | 0.0016 | 0.004 | 0.009 | 0.0001 | 0.0112 | 0.0215 | 0.0004 | 0.0035 | 0.0019 | 0.0048 | 0.0004 | 0.0006 |
Bud Periphery | 0.0005 | 0.0029 | 0.0009 | 0.0001 | 0.0001 | 0.0003 | 0.0015 | 0.0019 | 0.0014 | 0.0001 | 0.0005 | 0.0005 | 0.0002 | 0.0026 | 0.0012 | 0.0001 | 0.0031 | 0.0004 |
Bud Site | 0.0035 | 0.0376 | 0.0136 | 0.0005 | 0.0003 | 0.0003 | 0.0128 | 0.0458 | 0.0104 | 0.0003 | 0.0022 | 0.001 | 0.0035 | 0.0294 | 0.0045 | 0.0003 | 0.0013 | 0.0008 |
Cell Periphery | 0.0004 | 0.0005 | 0.0001 | 0 | 0.0001 | 0 | 0.0003 | 0.0002 | 0.0003 | 0 | 0.0001 | 0.0001 | 0.0001 | 0.0002 | 0.0001 | 0 | 0.0002 | 0.0001 |
Cytoplasm | 0.0077 | 0.0005 | 0.0001 | 0 | 0.0001 | 0.0001 | 0.0068 | 0.0003 | 0.0002 | 0.0002 | 0.0003 | 0.0002 | 0.0009 | 0.0006 | 0.0002 | 0 | 0.0009 | 0.0001 |
Cytoplasmic Foci | 0.2274 | 0.1935 | 0.1883 | 0.2586 | 0.2947 | 0.2029 | 0.232 | 0.278 | 0.2405 | 0.2376 | 0.3253 | 0.2234 | 0.1996 | 0.1947 | 0.2079 | 0.1471 | 0.343 | 0.2633 |
Eisosomes | 0.0006 | 0.0001 | 0.0002 | 0 | 0 | 0 | 0.0003 | 0.0001 | 0.0001 | 0 | 0.0001 | 0.0001 | 0.0001 | 0.0001 | 0.0001 | 0 | 0.0001 | 0.0001 |
Endoplasmic Reticulum | 0.0067 | 0.0001 | 0 | 0 | 0 | 0 | 0.0068 | 0 | 0 | 0.0007 | 0.0001 | 0 | 0.0007 | 0 | 0 | 0 | 0.0012 | 0.0003 |
Endosome | 0.0343 | 0.0123 | 0.0033 | 0.0024 | 0.0097 | 0.003 | 0.0565 | 0.0095 | 0.0118 | 0.0247 | 0.0177 | 0.0111 | 0.0188 | 0.0164 | 0.0048 | 0.0057 | 0.0133 | 0.0053 |
Golgi | 0.0103 | 0.0201 | 0.0103 | 0.0091 | 0.0408 | 0.0077 | 0.0319 | 0.0154 | 0.0235 | 0.0218 | 0.0359 | 0.0182 | 0.0158 | 0.0216 | 0.0191 | 0.0145 | 0.0192 | 0.0133 |
Lipid Particles | 0.0774 | 0.0584 | 0.097 | 0.0484 | 0.1742 | 0.1542 | 0.1245 | 0.0727 | 0.0617 | 0.1857 | 0.2673 | 0.134 | 0.1189 | 0.0636 | 0.058 | 0.2055 | 0.1922 | 0.22 |
Mitochondria | 0.0033 | 0.015 | 0.0233 | 0.0091 | 0.0123 | 0.0104 | 0.0183 | 0.0092 | 0.0205 | 0.0044 | 0.0039 | 0.0049 | 0.0179 | 0.0224 | 0.0222 | 0.0122 | 0.0579 | 0.0231 |
None | 0.0044 | 0.0002 | 0.0003 | 0.0001 | 0 | 0.0001 | 0.0025 | 0.0001 | 0.0001 | 0.0001 | 0.0001 | 0 | 0.0009 | 0.0001 | 0.0001 | 0 | 0.0008 | 0.0002 |
Nuclear Periphery | 0.0205 | 0.0001 | 0 | 0 | 0 | 0.0007 | 0.01 | 0.0002 | 0 | 0.0015 | 0 | 0 | 0.001 | 0.0001 | 0 | 0 | 0.018 | 0.0013 |
Nucleolus | 0.0007 | 0.0159 | 0.0004 | 0.0001 | 0.0005 | 0.0028 | 0.0011 | 0.0096 | 0.0016 | 0.0008 | 0.0005 | 0.0003 | 0.0006 | 0.0019 | 0.0015 | 0.0004 | 0.0021 | 0.0069 |
Nucleus | 0.0017 | 0.0014 | 0.0001 | 0 | 0 | 0.0006 | 0.0014 | 0.0009 | 0.0003 | 0.0001 | 0.0001 | 0 | 0.0003 | 0.0002 | 0.0004 | 0 | 0.0043 | 0.0005 |
Peroxisomes | 0.4423 | 0.5685 | 0.5501 | 0.6502 | 0.3491 | 0.6013 | 0.4426 | 0.4917 | 0.5395 | 0.5043 | 0.3018 | 0.5419 | 0.5777 | 0.5909 | 0.6478 | 0.6059 | 0.2923 | 0.4216 |
Punctate Nuclear | 0.048 | 0.0048 | 0.0125 | 0.0035 | 0.1043 | 0.0109 | 0.004 | 0.0071 | 0.014 | 0.0142 | 0.0022 | 0.0016 | 0.02 | 0.0145 | 0.0026 | 0.001 | 0.0044 | 0.006 |
Vacuole | 0.0023 | 0.0025 | 0.0001 | 0.0001 | 0.0004 | 0.0007 | 0.0035 | 0.0036 | 0.0007 | 0.0007 | 0.0005 | 0.0002 | 0.0008 | 0.0016 | 0.0003 | 0.0001 | 0.0034 | 0.0002 |
Vacuole Periphery | 0.0011 | 0.0005 | 0.0001 | 0.0001 | 0.0003 | 0.0004 | 0.003 | 0.0008 | 0.0003 | 0.0009 | 0.0002 | 0.0001 | 0.0004 | 0.0008 | 0.0003 | 0.0002 | 0.0042 | 0.0004 |
R1 | R2 | |||||||||
---|---|---|---|---|---|---|---|---|---|---|
G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | |
Gene Expression | 28.7041 | 34.7928 | 16.7815 | 23.253 | 10.7233 | 40.8442 | 53.2082 | 45.1125 | 42.1392 | 36.6253 |
Translational Efficiency | 1.1947 | 1.1773 | 1.6531 | 0.9866 | 1.6034 | 1.5373 | 1.2612 | 1.5586 | 1.4156 | 1.2065 |
Dataset | Hit |
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Protein Concentration | ✘ |
Protein Localization | ✘ |
Gene Expression | ✔ |
Translational Efficiency | ✘ |
Temp | Actin Patch (Sac6-tdTomato) | Cortical Patch (Sla1-GFP) | Late Endosome (Snf7-GFP) | Vacuole (Vph1-GFP) |
---|---|---|---|---|
37℃ | ||||
RT |
Gene / Allele | Actin Patch (Sac6-tdTomato) | Cortical Patch (Sla1-GFP) | Late Endosome (Snf7-GFP) | Vacuole (Sac6-tdTomato) |
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Gene | Images |
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Gene | Images |
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