Standard name
Human Ortholog
Description SUMO E3 ligase; catalyzes sumoylation of Yku70p/80p and Sir4p promoting telomere anchoring to the nuclear envelope and regulating telomerase activity; DNA-bound form catalyzes a DNA-damaged triggered sumoylation wave resulting in multisite modification of several DNA repair proteins, enhancing interactions between these proteins and accelerating repair; sumoylates Cse4p, a prerequisite for STUbL-mediated Ub-dependent degradation; role in telomere length maintenance

Micrographs

ensLOC DeepLoc
Localization WT1 WT2 WT3 RAP60 RAP140 RAP220 RAP300 RAP380 RAP460 RAP540 RAP620 RAP700 HU80 HU120 HU160 rpd3Δ_1 rpd3Δ_2 rpd3Δ_3 WT1 WT2 WT3 AF100 AF140 AF180
Cortical Patches 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Bud 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Bud Neck 0 0 0.09 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Bud Site 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Cell Periphery 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Cytoplasm 0.14 0.12 0.36 0.34 0.34 0.34 0.3 0.47 0.31 0.24 0.34 0.13 0.27 0.4 0.08 0.08 0.1 0.08 0.1 0.16
Endoplasmic Reticulum 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Endosome 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Golgi 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Mitochondria 0.19 0.12 0 0.21 0.11 0.42 0.4 0.21 0.61 0.73 0.51 0.2 0.05 0.07 0 0 0.06 0.08 0.08 0.08
Nucleus 0.71 0.61 0.51 0.48 0.5 0.36 0.39 0.33 0.24 0.24 0.25 0.72 0.55 0.39 0.59 0.6 0.4 0.33 0.23 0.14
Nuclear Periphery 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Nucleolus 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Peroxisomes 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
SpindlePole 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0.07 0.07
Vac/Vac Membrane 0.09 0.21 0 0 0.06 0 0 0 0 0 0 0.05 0.12 0.16 0.22 0.18 0.31 0.37 0.37 0.41
ensLOC DeepLoc
Localization WT1 WT2 WT3 RAP60 RAP140 RAP220 RAP300 RAP380 RAP460 RAP540 RAP620 RAP700 HU80 HU120 HU160 rpd3Δ_1 rpd3Δ_2 rpd3Δ_3 WT1 WT2 WT3 AF100 AF140 AF180
Cortical Patches 0 0 0 0 0 0 1 2 0 0 0 0 0 0 0 1 1 0 1 1
Bud 0 0 0 0 1 2 4 4 15 9 11 0 0 0 3 2 5 2 4 8
Bud Neck 2 0 26 6 12 6 16 16 14 4 11 0 0 0 1 3 4 2 5 6
Bud Site 0 0 0 2 0 2 10 1 7 2 6 0 0 0
Cell Periphery 0 1 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
Cytoplasm 36 30 107 83 95 135 146 179 125 73 124 28 60 109 25 22 54 8 26 41
Endoplasmic Reticulum 2 0 2 0 0 0 0 0 0 1 0 1 3 1 0 1 1 1 2 2
Endosome 0 9 1 2 3 1 0 0 1 0 0 1 7 6 5 6 3 0 7 3
Golgi 0 1 0 1 0 0 0 0 0 0 0 1 0 0 0 1 1 0 1 0
Mitochondria 49 31 13 52 30 165 190 79 249 225 186 43 12 19 6 6 28 8 21 20
Nucleus 187 155 150 119 141 141 188 124 99 73 91 153 124 106 196 175 208 38 64 38
Nuclear Periphery 0 0 0 0 0 0 0 1 2 1 0 0 1 0 0 1 0 0 1 0
Nucleolus 0 0 0 0 0 0 0 0 0 1 0 0 0 0 3 3 1 1 3 1
Peroxisomes 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
SpindlePole 2 2 10 10 8 7 11 13 7 5 13 0 2 1 12 6 20 3 20 18
Vac/Vac Membrane 25 52 11 7 18 16 13 13 15 4 9 10 26 45 74 52 161 42 102 108
Unique Cell Count 264 253 297 247 280 396 479 380 406 309 368 213 225 273 336 293 520 114 276 263
Labelled Cell Count 303 281 320 282 309 475 580 432 534 398 451 237 235 287 336 293 520 114 276 263


Cytoplasm, Nucleus

(Huh et al. Nature 2003 425:686)
Screen WT1 WT2 WT3 RAP60 RAP140 RAP220 RAP300 RAP380 RAP460 RAP540 RAP620 RAP700 HU80 HU120 HU160 rpd3Δ_1 rpd3Δ_2 rpd3Δ_3 AF100 AF140 AF180
Mean Cell GFP Intensity (1e-4) 4.2 4.6 4.8 4.5 4.9 3.8 4.0 4.4 3.4 3.1 3.7 4.4 4.5 4.3 3.9 4.1 4.5
Std Deviation (1e-4) 0.5 1.1 0.7 1.3 1.0 0.8 0.9 1.2 0.9 0.9 0.7 1.2 1.2 0.9 1.4 1.4 1.6
Intensity Change (Log2) -0.11 0.01 -0.34 -0.27 -0.15 -0.52 -0.62 -0.39 -0.13 -0.11 -0.17 -0.29 -0.24 -0.12


Localization RAP60 RAP140 RAP220 RAP300 RAP380 RAP460 RAP540 RAP620 RAP700 HU80 HU120 HU160 rpd3Δ_1 rpd3Δ_2 rpd3Δ_3
Actin
Bud
Bud Neck
Bud Site
Cell Periphery
Cyto
Endoplasmic Reticulum
Endosome
Golgi
Mitochondria
Nuclear Periphery
Nuc
Nucleolus
Peroxisomes
SpindlePole
Vac
Cortical Patches
Cytoplasm
Nucleus
Vacuole

Images

Circle plot not available

Protein Concentration and Protein Localization Data

R1 R2 R3
G1 Pre-START G1 Post-START S/G2 Metaphase Anaphase Telophase G1 Pre-START G1 Post-START S/G2 Metaphase Anaphase Telophase G1 Pre-START G1 Post-START S/G2 Metaphase Anaphase Telophase
Concentration -0.9809 -0.6316 -1.0161 -1.1588 -1.678 -0.8936 0.1519 0.4861 0.4494 0.316 0.1406 0.4235 -0.2911 -0.4861 -0.394 -0.6293 -0.333 -0.4096
Actin 0.0071 0.0004 0.0006 0.0002 0.0002 0.0002 0.012 0.0008 0.0024 0.0058 0.0013 0.0004 0.0077 0.0001 0.0016 0 0.0054 0.0022
Bud 0.0001 0.0001 0.0001 0 0 0 0.0003 0.0004 0.0007 0.0001 0.001 0 0.0002 0 0.0001 0 0.0003 0.0001
Bud Neck 0.0009 0.0005 0.0004 0.0003 0.0016 0.0032 0.0065 0.0009 0.0043 0.0004 0.0015 0.0015 0.0022 0.0003 0.0004 0.0004 0.0012 0.0021
Bud Periphery 0.0002 0.0001 0.0001 0 0.0001 0 0.0005 0.0004 0.0007 0.0002 0.0029 0.0001 0.0005 0 0.0004 0 0.001 0.0002
Bud Site 0.0023 0.0004 0.0003 0 0.0001 0.0001 0.0034 0.0034 0.0038 0.0002 0.0059 0.0001 0.0006 0.0005 0.0003 0 0.001 0.0001
Cell Periphery 0.0001 0 0 0 0 0 0.0002 0 0.0003 0 0.0004 0 0.0001 0 0 0 0.0001 0
Cytoplasm 0.0229 0.0513 0.0292 0.0263 0.0112 0.0197 0.0054 0.0316 0.0094 0.0151 0.0207 0.011 0.0118 0.0235 0.0171 0.0051 0.046 0.0096
Cytoplasmic Foci 0.0054 0.002 0.0029 0.002 0.001 0.0005 0.0033 0.001 0.0022 0.0006 0.0113 0.0011 0.0076 0.0005 0.0018 0.0002 0.0092 0.0013
Eisosomes 0.0002 0.0001 0 0 0 0 0.0001 0 0.0001 0.0001 0.0001 0 0.0001 0 0 0 0.0001 0.0001
Endoplasmic Reticulum 0.0023 0.0024 0.0015 0.0007 0.0008 0.0013 0.0015 0.0007 0.0005 0.0025 0.009 0.0006 0.001 0.0005 0.0005 0.0001 0.0011 0.0002
Endosome 0.0093 0.0023 0.0032 0.0011 0.001 0.0009 0.0142 0.0011 0.0012 0.0144 0.0316 0.0013 0.0062 0.001 0.0039 0.0001 0.0128 0.0015
Golgi 0.0012 0.0002 0.0004 0.0001 0 0 0.006 0.0001 0.0006 0.0034 0.0036 0.0007 0.0018 0 0.0008 0 0.005 0.001
Lipid Particles 0.0039 0.0015 0.0031 0.0002 0.0003 0.0002 0.0054 0.0003 0.0015 0.0024 0.0097 0.0066 0.0083 0.0002 0.0016 0 0.0179 0.0039
Mitochondria 0.0014 0.0007 0.002 0.0002 0.0007 0.0002 0.0023 0.0004 0.0143 0.0044 0.0236 0.0055 0.0062 0.0003 0.001 0.0001 0.0321 0.0011
None 0.0647 0.0877 0.072 0.1226 0.0434 0.0335 0.0098 0.0318 0.0272 0.0543 0.0095 0.0257 0.0269 0.0876 0.0719 0.009 0.1035 0.0443
Nuclear Periphery 0.0235 0.0223 0.0172 0.0217 0.0262 0.0188 0.0074 0.0126 0.0076 0.0219 0.0236 0.0081 0.0123 0.0078 0.0087 0.0025 0.0198 0.01
Nucleolus 0.0088 0.0101 0.0077 0.0062 0.0086 0.0167 0.0113 0.0063 0.0069 0.0032 0.0186 0.0109 0.0079 0.0082 0.0101 0.0087 0.0106 0.0153
Nucleus 0.7842 0.7385 0.8091 0.7283 0.868 0.8426 0.8726 0.8829 0.8698 0.8603 0.7884 0.8817 0.836 0.8298 0.8455 0.9338 0.6193 0.8324
Peroxisomes 0.0044 0.0059 0.0079 0.0001 0 0 0.0041 0.0001 0.0024 0.0003 0.0082 0.0019 0.0137 0 0.0012 0 0.0292 0.0027
Punctate Nuclear 0.0551 0.0711 0.0408 0.0897 0.0359 0.0613 0.0312 0.0238 0.0429 0.0078 0.0205 0.0423 0.0445 0.0388 0.0319 0.0399 0.0817 0.0715
Vacuole 0.0016 0.0017 0.001 0.0002 0.0006 0.0006 0.0019 0.0013 0.0007 0.0007 0.0067 0.0004 0.0028 0.0006 0.0009 0 0.0016 0.0002
Vacuole Periphery 0.0006 0.0004 0.0003 0.0001 0.0003 0.0002 0.0004 0.0002 0.0003 0.0019 0.002 0.0002 0.0016 0.0001 0.0003 0 0.0012 0.0002

Sequencing Data

R1 R2
G1 Post-START S/G2 Metaphase Anaphase Telophase G1 Post-START S/G2 Metaphase Anaphase Telophase
Gene Expression 8.8535 5.4271 4.6983 8.0678 6.8874 12.1353 9.0312 9.4133 10.4717 11.0547
Translational Efficiency 0.761 0.8412 1.0221 0.693 0.7936 0.6846 0.704 0.6893 0.6603 0.6629

Hit Data

Dataset Hit
Protein Concentration
Protein Localization
Gene Expression
Translational Efficiency
Standard name
Human Ortholog
Description SUMO E3 ligase; catalyzes sumoylation of Yku70p/80p and Sir4p promoting telomere anchoring to the nuclear envelope and regulating telomerase activity; DNA-bound form catalyzes a DNA-damaged triggered sumoylation wave resulting in multisite modification of several DNA repair proteins, enhancing interactions between these proteins and accelerating repair; sumoylates Cse4p, a prerequisite for STUbL-mediated Ub-dependent degradation; role in telomere length maintenance
Localization
Cell Percentages nucleus (70%)
Cell Cycle Regulation No
Subcompartmental Group nucleus-3

Nfi1

Nfi1


Nearest neighbours ( genes)

correlation threshold

0.6

1.0

0.80


Biological Process (Gene Ontology)

Molecular Function (Gene Ontology)

Cellular Component (Gene Ontology)


Endocytosis
Temp Actin Patch (Sac6-tdTomato) Cortical Patch (Sla1-GFP) Late Endosome (Snf7-GFP) Vacuole (Vph1-GFP)
37℃
RT
Cell Cycle Omics

CYCLoPs (Nfi1-GFP)
Gene / Allele Actin Patch (Sac6-tdTomato) Cortical Patch (Sla1-GFP) Late Endosome (Snf7-GFP) Vacuole (Sac6-tdTomato)
Gene Images
Gene Images
Images are not yet available
Images are not yet available