Standard name
Human Ortholog
Description Microtubule associated protein; regulates microtubule dynamics; required for accurate meiotic chromosome segregation; null mutant displays large budded cells due to delayed mitotic progression, increased levels of spontaneous Rad52 foci; IRC15 has a paralog, LPD1, that arose from the whole genome duplication
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Micrographs

ensLOC DeepLoc
Localization WT1 WT2 WT3 RAP60 RAP140 RAP220 RAP300 RAP380 RAP460 RAP540 RAP620 RAP700 HU80 HU120 HU160 rpd3Δ_1 rpd3Δ_2 rpd3Δ_3 WT1 WT2 WT3 AF100 AF140 AF180
Cortical Patches 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Bud 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Bud Neck 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Bud Site 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 – – – – – –
Cell Periphery 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Cytoplasm 0.97 0.98 0.96 0.94 0.94 0.84 0.73 0.62 0.64 0.57 0.47 0.49 0.99 0.99 1.0 0.95 0.89 0.89 0.87 0.92 0.72 0.89 0.88 0.84
Endoplasmic Reticulum 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0.06 0.05 0 0 0 0 0 0
Endosome 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Golgi 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Mitochondria 0.12 0 0.05 0.25 0.06 0.36 0.5 0.54 0.56 0.6 0.75 0.68 0 0 0 0 0 0 0.05 0 0.14 0 0 0
Nucleus 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Nuclear Periphery 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Nucleolus 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Peroxisomes 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
SpindlePole 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Vac/Vac Membrane 0 0 0 0 0 0 0 0.07 0 0 0 0.06 0 0 0 0 0.09 0.11 0 0 0 0 0 0
ensLOC DeepLoc
Localization WT1 WT2 WT3 RAP60 RAP140 RAP220 RAP300 RAP380 RAP460 RAP540 RAP620 RAP700 HU80 HU120 HU160 rpd3Δ_1 rpd3Δ_2 rpd3Δ_3 WT1 WT2 WT3 AF100 AF140 AF180
Cortical Patches 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 2 0 2 2 1 0 1 2
Bud 0 0 1 0 1 1 0 0 3 3 1 4 0 0 0 0 0 0 0 4 1 0 1 2
Bud Neck 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 2 1
Bud Site 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 – – – – – –
Cell Periphery 0 2 0 0 0 1 0 0 1 3 0 2 0 0 0 5 8 4 0 1 0 0 0 0
Cytoplasm 222 319 123 102 118 152 120 102 109 142 64 85 202 201 188 444 332 227 199 301 99 84 187 156
Endoplasmic Reticulum 1 1 0 0 0 0 1 0 2 0 1 1 1 1 0 16 22 14 0 0 1 0 0 1
Endosome 0 0 1 0 1 0 1 1 1 0 0 0 0 0 0 11 11 8 2 0 1 0 1 4
Golgi 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 5 2 1 1 1 0 0 0
Mitochondria 28 5 7 27 7 65 82 89 96 149 102 119 1 3 0 7 2 5 11 4 19 2 7 8
Nucleus 0 2 3 1 1 1 2 4 2 5 1 5 1 0 0 3 3 0 0 1 0 0 0 0
Nuclear Periphery 0 1 0 0 0 0 0 2 0 3 2 3 0 0 0 0 0 0 0 0 0 0 0 0
Nucleolus 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0 0 1 0
Peroxisomes 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
SpindlePole 0 0 1 0 1 0 0 1 0 0 0 0 0 0 0 3 4 5 3 1 0 0 1 2
Vac/Vac Membrane 1 1 0 0 3 3 6 11 7 10 3 11 0 1 0 15 35 27 2 3 5 2 2 3
Unique Cell Count 230 324 128 109 125 180 165 164 170 247 136 175 204 204 188 467 373 256 229 329 138 95 212 187
Labelled Cell Count 252 332 137 130 132 223 212 210 221 316 175 230 205 207 188 505 424 295 229 329 138 95 212 187


Cytoplasm

(Huh et al. Nature 2003 425:686)
Screen WT1 WT2 WT3 RAP60 RAP140 RAP220 RAP300 RAP380 RAP460 RAP540 RAP620 RAP700 HU80 HU120 HU160 rpd3Δ_1 rpd3Δ_2 rpd3Δ_3 AF100 AF140 AF180
Mean Cell GFP Intensity (1e-4) 3.4 4.5 4.3 3.9 4.3 4.3 3.7 4.1 4.0 3.8 3.8 3.9 4.9 5.0 5.2 6.3 7.7 7.9 3.9 4.0 4.9
Std Deviation (1e-4) 0.5 1.9 1.5 1.1 1.4 2.1 1.9 1.7 1.6 2.0 1.0 1.5 1.1 1.3 1.3 1.5 1.6 2.8 1.2 1.3 1.5
Intensity Change (Log2) – – – -0.12 0.01 0.02 -0.19 -0.07 -0.1 -0.16 -0.16 -0.14 0.19 0.22 0.29 0.55 0.85 0.88 -0.14 -0.08 0.2


Localization RAP60 RAP140 RAP220 RAP300 RAP380 RAP460 RAP540 RAP620 RAP700 HU80 HU120 HU160 rpd3Δ_1 rpd3Δ_2 rpd3Δ_3
Actin – – – – – – – – – – – – – – –
Bud – – – – – – – – – – – – – 0 0
Bud Neck – – – – – – – – – – – – – 0 0
Bud Site – – – – – – – – – – – – – 0 0
Cell Periphery – – – – – – – – – – – – – 0 0
Cyto – – – – – – – – – – – – – – –
Endoplasmic Reticulum – – – – – – – – – – – – – 0 0
Endosome – – – – – – – – – – – – – 0 0
Golgi – – – – – – – – – – – – – 0 0
Mitochondria – – – – – – – – – – – – – 0 0
Nuclear Periphery – – – – – – – – – – – – – 0 0
Nuc – – – – – – – – – – – – – – –
Nucleolus – – – – – – – – – – – – – 0 0
Peroxisomes – – – – – – – – – – – – – 0 0
SpindlePole – – – – – – – – – – – – – 0 0
Vac – – – – – – – – – – – – – – –
Cortical Patches – – – – – – – – – – – – – 0 0
Cytoplasm – – – – – – – – – – – – – 0 0
Nucleus – – – – – – – – – – – – – 0 0
Vacuole – – – – – – – – – – – – – 3.6 3.8

Images

Circle plot not available

Protein Concentration and Protein Localization Data

R1 R2 R3
G1 Pre-START G1 Post-START S/G2 Metaphase Anaphase Telophase G1 Pre-START G1 Post-START S/G2 Metaphase Anaphase Telophase G1 Pre-START G1 Post-START S/G2 Metaphase Anaphase Telophase
Concentration 1.73 1.02 1.2197 0.6024 0.8922 0.9385 3.0732 2.9987 2.7973 3.3873 3.1171 2.9155 5.7065 3.8373 4.2352 4.1195 4.0862 4.1662
Actin 0.1198 0.0008 0.0067 0.0009 0.0147 0.0031 0.0695 0.0082 0.0137 0.0355 0.0155 0.0192 0.1446 0.0128 0.025 0.0161 0.0056 0.0037
Bud 0.004 0.0122 0.0022 0.0003 0.0018 0.0002 0.0007 0.0019 0.0008 0.0007 0.0032 0.0021 0.003 0.0045 0.0033 0.0056 0.0022 0.0006
Bud Neck 0.0141 0.0002 0.0004 0.0002 0.0011 0.0003 0.0076 0.002 0.001 0.0187 0.0013 0.0026 0.0025 0.0002 0.0011 0.0016 0.0004 0.0006
Bud Periphery 0.0059 0.0102 0.0051 0.0008 0.0024 0.0012 0.0017 0.0049 0.001 0.0011 0.0028 0.005 0.0172 0.0067 0.0075 0.0244 0.0042 0.0033
Bud Site 0.0286 0.004 0.0123 0.0001 0.041 0.0001 0.0149 0.0165 0.0071 0.0035 0.0092 0.0007 0.0064 0.0087 0.0083 0.0025 0.0011 0.0001
Cell Periphery 0.001 0.0003 0.0006 0.0001 0.0005 0.0001 0.0024 0.0006 0.0005 0.0005 0.0002 0.0002 0.002 0.0003 0.0005 0.0004 0.0002 0.0001
Cytoplasm 0.1378 0.353 0.3388 0.3786 0.4978 0.3198 0.2124 0.3779 0.2427 0.1429 0.3168 0.3219 0.2383 0.3257 0.298 0.2946 0.3622 0.3531
Cytoplasmic Foci 0.0218 0.0059 0.0095 0.0046 0.0191 0.0152 0.0133 0.0057 0.005 0.0266 0.0804 0.0071 0.0415 0.0108 0.0264 0.026 0.0215 0.0114
Eisosomes 0.0015 0.0001 0.0009 0.0001 0.0004 0.0002 0.0009 0.0002 0.0003 0.0002 0.0005 0.0001 0.0016 0.0001 0.0003 0.0002 0.0001 0.0001
Endoplasmic Reticulum 0.0095 0.0022 0.0039 0.002 0.0027 0.0019 0.0302 0.0059 0.0014 0.0014 0.0051 0.0012 0.02 0.0026 0.0035 0.004 0.0051 0.0024
Endosome 0.0302 0.0019 0.0067 0.0036 0.0246 0.0022 0.0328 0.0046 0.0026 0.0115 0.07 0.0041 0.0416 0.0045 0.0334 0.0111 0.0612 0.0033
Golgi 0.0112 0.0001 0.0043 0.0002 0.0037 0.0003 0.0098 0.001 0.0038 0.0066 0.0484 0.0024 0.0162 0.0008 0.0195 0.0076 0.0152 0.002
Lipid Particles 0.0158 0.0003 0.0059 0.0004 0.0059 0.0017 0.0128 0.0004 0.0026 0.0145 0.018 0.0035 0.0152 0.0011 0.0064 0.0194 0.0055 0.0015
Mitochondria 0.0188 0.0003 0.0016 0.0006 0.004 0.001 0.004 0.0208 0.0162 0.0365 0.0121 0.0007 0.0327 0.0006 0.0229 0.0097 0.0057 0.0013
None 0.5305 0.6025 0.5898 0.6013 0.3635 0.6457 0.5327 0.5375 0.6876 0.6844 0.3421 0.6184 0.3486 0.6087 0.5053 0.5226 0.4892 0.5999
Nuclear Periphery 0.0104 0.0008 0.0017 0.0013 0.0019 0.0014 0.0229 0.0054 0.0003 0.0012 0.003 0.0021 0.0158 0.0008 0.0077 0.0045 0.0055 0.0009
Nucleolus 0.0024 0.0002 0.0004 0.0001 0.0024 0.0002 0.0003 0.0002 0.0001 0.0007 0.0004 0.0003 0.0006 0.0006 0.0054 0.0003 0.0003 0.0002
Nucleus 0.0051 0.0021 0.0019 0.0022 0.0029 0.0012 0.004 0.0025 0.0006 0.0011 0.0013 0.0012 0.02 0.0028 0.0035 0.0025 0.002 0.0055
Peroxisomes 0.0154 0.0001 0.0049 0.0002 0.003 0.0006 0.0176 0.0003 0.0108 0.0078 0.0633 0.0037 0.0203 0.0035 0.0057 0.0243 0.0017 0.0019
Punctate Nuclear 0.0087 0.0016 0.0012 0.0006 0.0039 0.0028 0.0062 0.0009 0.0004 0.0025 0.0025 0.0023 0.0076 0.0022 0.0126 0.0205 0.0028 0.0075
Vacuole 0.0059 0.001 0.001 0.0014 0.0023 0.0006 0.0017 0.0019 0.0011 0.0016 0.0021 0.0008 0.0028 0.0018 0.0023 0.0014 0.005 0.0004
Vacuole Periphery 0.0016 0.0001 0.0003 0.0004 0.0007 0.0003 0.0018 0.0008 0.0003 0.0007 0.0016 0.0003 0.0016 0.0002 0.0011 0.0006 0.0031 0.0001

Sequencing Data

R1 R2
G1 Post-START S/G2 Metaphase Anaphase Telophase G1 Post-START S/G2 Metaphase Anaphase Telophase
Gene Expression 1.839 1.9728 3.4157 2.5774 0.4769 1.4704 4.8204 7.4044 6.9102 4.4583
Translational Efficiency – – – – – – – – – –

Hit Data

Dataset Hit
Protein Concentration ✘
Protein Localization ✘
Gene Expression ✘
Translational Efficiency –
Standard name
Human Ortholog
Description Microtubule associated protein; regulates microtubule dynamics; required for accurate meiotic chromosome segregation; null mutant displays large budded cells due to delayed mitotic progression, increased levels of spontaneous Rad52 foci; IRC15 has a paralog, LPD1, that arose from the whole genome duplication
Localization
Cell Percentages cytoplasm (61%)
Cell Cycle Regulation No
Subcompartmental Group cytoplasm-9

Irc15

Irc15


Nearest neighbours ( genes)

correlation threshold

0.6

1.0

0.80


Biological Process (Gene Ontology)
Molecular Function (Gene Ontology)
Cellular Component (Gene Ontology)

Endocytosis
Temp Actin Patch (Sac6-tdTomato) Cortical Patch (Sla1-GFP) Late Endosome (Snf7-GFP) Vacuole (Vph1-GFP)
37℃
RT
Cell Cycle Omics

CYCLoPs (Irc15-GFP)
Gene / Allele Actin Patch (Sac6-tdTomato) Cortical Patch (Sla1-GFP) Late Endosome (Snf7-GFP) Vacuole (Sac6-tdTomato)
Gene Images
Gene Images
Images are not yet available
Images are not yet available