Standard name | |
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Human Ortholog | |
Description | Protein of unknown function that influences nuclear pore distribution; co-purifies with ribosomes; contains a GYF domain, which bind proline-rich sequences; deletion extends chronological lifespan; SYH1 has a paralog, SMY2, that arose from the whole genome duplication |
ensLOC | DeepLoc | |||||||||||||||||||||||
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Localization | WT1 | WT2 | WT3 | RAP60 | RAP140 | RAP220 | RAP300 | RAP380 | RAP460 | RAP540 | RAP620 | RAP700 | HU80 | HU120 | HU160 | rpd3Δ_1 | rpd3Δ_2 | rpd3Δ_3 | WT1 | WT2 | WT3 | AF100 | AF140 | AF180 |
Cortical Patches | 0 | 0 | 1 | 2 | 0 | 2 | 6 | 1 | 0 | 0 | 2 | 3 | 1 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 1 | 0 | 2 | 1 |
Bud | 0 | 0 | 4 | 1 | 2 | 0 | 2 | 0 | 6 | 8 | 8 | 5 | 0 | 2 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 2 | 0 |
Bud Neck | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 1 | 0 | 0 |
Bud Site | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | – | – | – | – | – | – |
Cell Periphery | 8 | 3 | 7 | 5 | 13 | 15 | 19 | 6 | 15 | 11 | 12 | 15 | 7 | 9 | 7 | 18 | 18 | 14 | 0 | 0 | 0 | 0 | 0 | 0 |
Cytoplasm | 154 | 267 | 215 | 226 | 366 | 320 | 508 | 333 | 264 | 279 | 195 | 255 | 274 | 369 | 552 | 346 | 173 | 138 | 138 | 268 | 198 | 140 | 411 | 350 |
Endoplasmic Reticulum | 2 | 8 | 3 | 2 | 3 | 10 | 13 | 14 | 1 | 1 | 3 | 4 | 3 | 3 | 2 | 12 | 4 | 7 | 7 | 1 | 2 | 18 | 68 | 47 |
Endosome | 0 | 1 | 0 | 0 | 2 | 0 | 0 | 0 | 2 | 2 | 0 | 6 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 1 | 0 | 1 | 0 |
Golgi | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 1 | 1 | 3 | 0 | 0 | 1 | 3 | 3 |
Mitochondria | 3 | 3 | 1 | 3 | 10 | 30 | 56 | 28 | 126 | 116 | 120 | 104 | 2 | 0 | 2 | 3 | 1 | 2 | 4 | 1 | 6 | 5 | 16 | 9 |
Nucleus | 6 | 0 | 1 | 4 | 1 | 0 | 3 | 4 | 3 | 0 | 1 | 3 | 2 | 1 | 1 | 6 | 2 | 4 | 3 | 0 | 2 | 0 | 0 | 0 |
Nuclear Periphery | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 5 | 0 | 0 | 0 | 1 | 0 |
Nucleolus | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Peroxisomes | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 1 |
SpindlePole | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 |
Vac/Vac Membrane | 3 | 1 | 1 | 1 | 3 | 5 | 1 | 9 | 10 | 12 | 6 | 8 | 1 | 3 | 0 | 19 | 5 | 8 | 27 | 5 | 10 | 25 | 41 | 28 |
Unique Cell Count | 163 | 276 | 219 | 228 | 378 | 348 | 557 | 372 | 356 | 362 | 280 | 353 | 281 | 375 | 553 | 368 | 185 | 157 | 194 | 281 | 227 | 200 | 558 | 450 |
Labelled Cell Count | 177 | 284 | 234 | 244 | 400 | 382 | 609 | 395 | 427 | 430 | 349 | 404 | 291 | 388 | 565 | 404 | 204 | 176 | 194 | 281 | 227 | 200 | 558 | 450 |
Screen | WT1 | WT2 | WT3 | RAP60 | RAP140 | RAP220 | RAP300 | RAP380 | RAP460 | RAP540 | RAP620 | RAP700 | HU80 | HU120 | HU160 | rpd3Δ_1 | rpd3Δ_2 | rpd3Δ_3 | AF100 | AF140 | AF180 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Mean Cell GFP Intensity (1e-4) | 8.9 | 8.3 | 7.8 | 7.3 | 7.9 | 6.3 | 6.2 | 6.3 | 5.4 | 5.2 | 5.1 | 5.6 | 8.0 | 8.1 | 8.1 | 11.7 | 12.6 | 11.4 | 7.7 | 7.6 | 8.0 |
Std Deviation (1e-4) | 1.2 | 1.1 | 1.0 | 1.1 | 1.1 | 1.1 | 1.0 | 1.1 | 1.2 | 1.0 | 0.9 | 0.8 | 1.1 | 1.0 | 1.0 | 1.9 | 1.7 | 1.8 | 1.2 | 1.2 | 1.3 |
Intensity Change (Log2) | – | – | – | -0.1 | 0.03 | -0.3 | -0.32 | -0.3 | -0.52 | -0.57 | -0.61 | -0.47 | 0.05 | 0.07 | 0.06 | 0.6 | 0.7 | 0.56 | -0.01 | -0.04 | 0.04 |
Localization | RAP60 | RAP140 | RAP220 | RAP300 | RAP380 | RAP460 | RAP540 | RAP620 | RAP700 | HU80 | HU120 | HU160 | rpd3Δ_1 | rpd3Δ_2 | rpd3Δ_3 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Cortical Patches | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Bud | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0.7 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Bud Neck | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Bud Site | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Cell Periphery | -0.7 | 0.2 | 0.7 | 0.1 | 0 | 0.6 | -0.1 | 0.6 | 0.6 | -0.5 | -0.6 | 0 | 1.0 | 2.7 | 2.4 |
Cytoplasm | 0.9 | -1.0 | -3.1 | -3.5 | -3.9 | -7.5 | -6.9 | -8.3 | -7.9 | -0.5 | 0.2 | 2.6 | -2.4 | -2.4 | -4.1 |
Endoplasmic Reticulum | 0 | 0 | 1.2 | 0 | 1.7 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1.4 | 0 | 0 |
Endosome | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Golgi | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Mitochondria | 0 | 0 | 4.2 | 4.6 | 3.8 | 9.8 | 9.2 | 11.0 | 8.7 | 0 | 0 | 0 | 0 | 0 | 0 |
Nucleus | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Nuclear Periphery | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Nucleolus | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Peroxisomes | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
SpindlePole | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Vacuole | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 3.0 | 0 | 0 |
R1 | R2 | R3 | ||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
G1 Pre-START | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | G1 Pre-START | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | G1 Pre-START | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | |
Concentration | 5.3722 | 6.3466 | 6.0958 | 5.9886 | 5.7027 | 6.0607 | 2.3235 | 4.5962 | 3.7684 | 3.1739 | 2.8324 | 3.4878 | 4.1302 | 6.1252 | 5.4265 | 5.012 | 3.9653 | 5.1833 |
Actin | 0.0305 | 0.001 | 0.0091 | 0.0007 | 0.039 | 0.001 | 0.0075 | 0.0026 | 0.0009 | 0.0013 | 0.0047 | 0.0009 | 0.0366 | 0.0119 | 0.0119 | 0.0071 | 0.0048 | 0.0089 |
Bud | 0.0024 | 0.0003 | 0.0006 | 0.0005 | 0.0002 | 0.0004 | 0.0005 | 0.0004 | 0.0005 | 0.0196 | 0.0027 | 0.0002 | 0.0058 | 0.023 | 0.022 | 0.0094 | 0.0009 | 0.0026 |
Bud Neck | 0.0209 | 0.0003 | 0.0004 | 0.0006 | 0.0004 | 0.0009 | 0.0007 | 0.0002 | 0.0003 | 0.0006 | 0.0016 | 0.0007 | 0.0009 | 0.0011 | 0.0014 | 0.0011 | 0.0007 | 0.0023 |
Bud Periphery | 0.0018 | 0.0002 | 0.001 | 0.0004 | 0.0002 | 0.0014 | 0.0006 | 0.0001 | 0.0001 | 0.0148 | 0.0054 | 0.0001 | 0.0044 | 0.0103 | 0.0102 | 0.0073 | 0.0007 | 0.0017 |
Bud Site | 0.0063 | 0.0037 | 0.0015 | 0.0009 | 0.0002 | 0.0002 | 0.0008 | 0.0013 | 0.0015 | 0.0011 | 0.0016 | 0.0002 | 0.0081 | 0.0605 | 0.0203 | 0.002 | 0.0008 | 0.0007 |
Cell Periphery | 0.001 | 0.0015 | 0.0014 | 0.0004 | 0.0004 | 0.0008 | 0.0002 | 0.0002 | 0.0001 | 0.0004 | 0.0002 | 0 | 0.0007 | 0.0012 | 0.0007 | 0.0003 | 0.0002 | 0.0002 |
Cytoplasm | 0.6047 | 0.9346 | 0.8677 | 0.6171 | 0.7713 | 0.8898 | 0.6843 | 0.9424 | 0.9035 | 0.7376 | 0.7124 | 0.8812 | 0.6825 | 0.803 | 0.794 | 0.7868 | 0.7132 | 0.7985 |
Cytoplasmic Foci | 0.0368 | 0.0096 | 0.0164 | 0.0665 | 0.0174 | 0.014 | 0.054 | 0.0175 | 0.0205 | 0.0269 | 0.0532 | 0.0248 | 0.0448 | 0.0172 | 0.0355 | 0.0349 | 0.0357 | 0.0385 |
Eisosomes | 0.0008 | 0.0001 | 0.0003 | 0.0001 | 0.0002 | 0 | 0.0001 | 0 | 0 | 0 | 0 | 0 | 0.0005 | 0.0001 | 0.0001 | 0.0001 | 0.0004 | 0.0002 |
Endoplasmic Reticulum | 0.0781 | 0.011 | 0.017 | 0.0879 | 0.0067 | 0.0185 | 0.0292 | 0.0093 | 0.0047 | 0.0039 | 0.0052 | 0.0045 | 0.0218 | 0.0031 | 0.0145 | 0.0158 | 0.0062 | 0.0128 |
Endosome | 0.0447 | 0.0142 | 0.0281 | 0.1709 | 0.0719 | 0.036 | 0.1251 | 0.0133 | 0.0465 | 0.1089 | 0.1258 | 0.0485 | 0.035 | 0.0067 | 0.0316 | 0.0408 | 0.0651 | 0.0465 |
Golgi | 0.0112 | 0.0024 | 0.0058 | 0.007 | 0.0099 | 0.0045 | 0.0226 | 0.0046 | 0.0061 | 0.0118 | 0.0163 | 0.0119 | 0.0052 | 0.0007 | 0.0053 | 0.0025 | 0.0056 | 0.0055 |
Lipid Particles | 0.0219 | 0.0004 | 0.001 | 0.0006 | 0.0178 | 0.0001 | 0.0081 | 0.0001 | 0.0003 | 0.0027 | 0.0051 | 0.0048 | 0.0179 | 0.0005 | 0.0015 | 0.0019 | 0.0363 | 0.0058 |
Mitochondria | 0.0105 | 0.0005 | 0.0057 | 0.0158 | 0.0015 | 0.0146 | 0.0173 | 0.0011 | 0.0015 | 0.0445 | 0.0218 | 0.0066 | 0.0355 | 0.0029 | 0.0033 | 0.0046 | 0.053 | 0.019 |
None | 0.0726 | 0.0147 | 0.026 | 0.0078 | 0.0285 | 0.0122 | 0.0116 | 0.0027 | 0.0053 | 0.0056 | 0.0031 | 0.0009 | 0.0542 | 0.0435 | 0.024 | 0.0322 | 0.017 | 0.0299 |
Nuclear Periphery | 0.0054 | 0.0006 | 0.0009 | 0.0064 | 0.0033 | 0.0007 | 0.0106 | 0.0005 | 0.001 | 0.0009 | 0.0027 | 0.0005 | 0.0104 | 0.0011 | 0.0025 | 0.013 | 0.0119 | 0.0076 |
Nucleolus | 0.0008 | 0 | 0.0001 | 0.0001 | 0.0001 | 0 | 0.0003 | 0 | 0 | 0.0001 | 0.0002 | 0 | 0.0012 | 0.0007 | 0.0008 | 0.001 | 0.0005 | 0.0016 |
Nucleus | 0.0039 | 0.0006 | 0.0008 | 0.0019 | 0.0007 | 0.0006 | 0.0044 | 0.0004 | 0.0008 | 0.001 | 0.0016 | 0.0005 | 0.0059 | 0.0039 | 0.0081 | 0.01 | 0.0032 | 0.0053 |
Peroxisomes | 0.0249 | 0.0001 | 0.0088 | 0.0003 | 0.0116 | 0.0001 | 0.0025 | 0.0005 | 0.0001 | 0.0027 | 0.0046 | 0.0084 | 0.0045 | 0.0009 | 0.0011 | 0.0008 | 0.0299 | 0.0013 |
Punctate Nuclear | 0.0131 | 0.0001 | 0.0002 | 0.0006 | 0.0049 | 0.0001 | 0.0084 | 0.0001 | 0.0003 | 0.0002 | 0.0094 | 0.0002 | 0.0051 | 0.0018 | 0.0024 | 0.0076 | 0.0017 | 0.004 |
Vacuole | 0.0063 | 0.0039 | 0.0063 | 0.0101 | 0.012 | 0.0027 | 0.0079 | 0.0022 | 0.0048 | 0.0122 | 0.0167 | 0.0037 | 0.0158 | 0.0055 | 0.0076 | 0.0165 | 0.0078 | 0.0049 |
Vacuole Periphery | 0.0014 | 0.0003 | 0.001 | 0.0035 | 0.0017 | 0.0013 | 0.0032 | 0.0005 | 0.0011 | 0.0032 | 0.0058 | 0.0014 | 0.0034 | 0.0007 | 0.0012 | 0.0042 | 0.0045 | 0.0021 |
R1 | R2 | |||||||||
---|---|---|---|---|---|---|---|---|---|---|
G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | |
Gene Expression | 32.6694 | 42.9364 | 35.018 | 36.7563 | 28.3317 | 25.5156 | 40.3818 | 41.4435 | 37.6858 | 40.7417 |
Translational Efficiency | 1.471 | 1.1703 | 1.4153 | 1.6108 | 1.7873 | 1.8065 | 1.1032 | 1.1034 | 1.1845 | 1.1644 |
Dataset | Hit |
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Protein Concentration | ✔ |
Protein Localization | ✘ |
Gene Expression | ✔ |
Translational Efficiency | ✘ |
Temp | Actin Patch (Sac6-tdTomato) | Cortical Patch (Sla1-GFP) | Late Endosome (Snf7-GFP) | Vacuole (Vph1-GFP) |
---|---|---|---|---|
37℃ | ||||
RT |
Gene / Allele | Actin Patch (Sac6-tdTomato) | Cortical Patch (Sla1-GFP) | Late Endosome (Snf7-GFP) | Vacuole (Sac6-tdTomato) |
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Gene | Images |
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Gene | Images |
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