Standard name
Human Ortholog
Description Mitochondrial inner membrane half-type ABC transporter; required for respiratory growth at high temperature; localizes to vacuole membrane in response to H2O2; similar to human TAP1 and TAP2 implicated in bare lymphocyte syndrome and Wegener-like granulomatosis

Micrographs

ensLOC DeepLoc
Localization WT1 WT2 WT3 RAP60 RAP140 RAP220 RAP300 RAP380 RAP460 RAP540 RAP620 RAP700 HU80 HU120 HU160 rpd3Δ_1 rpd3Δ_2 rpd3Δ_3 WT1 WT2 WT3 AF100 AF140 AF180
Cortical Patches 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0.05
Bud 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Bud Neck 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Bud Site 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Cell Periphery 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Cytoplasm 0 0 0 0 0 0 0 0 0 0 0 0.05 0.05 0 0.31 0 0 0 0 0 0
Endoplasmic Reticulum 0 0 0 0 0 0 0 0 0 0 0 0.05 0.07 0 0.12 0 0 0 0 0 0
Endosome 0 0 0 0 0 0 0 0 0 0 0 0.07 0.08 0 0 0 0.06 0 0.06 0 0
Golgi 0.06 0 0 0 0 0 0 0 0 0 0 0.35 0.36 0.56 0.15 0.06 0.1 0 0 0.09 0.08
Mitochondria 0.85 0.94 0.93 0.94 0.86 0.94 0.91 0.92 0.95 0.95 0.93 0.57 0.55 0.35 0 0.79 0.71 0.75 0.65 0.63 0.61
Nucleus 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Nuclear Periphery 0.06 0 0.05 0 0.08 0.1 0.07 0.05 0.08 0.09 0.12 0 0 0 0.08 0 0 0 0 0 0
Nucleolus 0.05 0 0.05 0 0.08 0.12 0.12 0.1 0.12 0.07 0.13 0 0 0 0 0 0 0 0 0 0
Peroxisomes 0 0 0.06 0.06 0 0 0 0 0 0 0 0 0 0 0 0.07 0 0.12 0.12 0.13 0.1
SpindlePole 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0.08 0 0 0 0 0 0
Vac/Vac Membrane 0.16 0.08 0 0 0.1 0 0 0 0 0 0 0.23 0.23 0.25 0.27 0 0 0 0 0 0.05
ensLOC DeepLoc
Localization WT1 WT2 WT3 RAP60 RAP140 RAP220 RAP300 RAP380 RAP460 RAP540 RAP620 RAP700 HU80 HU120 HU160 rpd3Δ_1 rpd3Δ_2 rpd3Δ_3 WT1 WT2 WT3 AF100 AF140 AF180
Cortical Patches 1 2 1 2 0 0 0 0 0 0 1 2 2 1 0 5 10 7 4 11 11
Bud 3 4 7 5 4 9 11 16 15 11 13 0 0 0 0 0 2 0 2 1 3
Bud Neck 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 3
Bud Site 0 2 0 0 1 5 5 5 12 9 10 0 0 0 0
Cell Periphery 12 13 7 4 2 1 4 1 2 1 2 1 1 1 1 0 0 0 0 1 0
Cytoplasm 2 3 9 4 6 5 5 10 2 3 4 7 7 4 8 0 0 0 1 0 0
Endoplasmic Reticulum 0 4 0 1 0 2 0 3 4 6 4 6 9 1 3 0 0 1 1 1 1
Endosome 13 3 7 1 10 8 6 6 0 1 0 9 11 3 0 10 22 15 12 12 10
Golgi 19 9 4 3 5 0 0 2 0 2 0 45 47 53 4 21 41 17 7 24 20
Mitochondria 272 364 383 212 272 403 508 509 520 440 505 73 73 33 0 272 283 311 123 176 147
Nucleus 0 1 0 0 0 4 4 3 2 1 1 0 0 0 1 0 0 0 0 0 0
Nuclear Periphery 19 12 22 10 24 42 41 26 45 44 67 4 3 1 2 3 2 4 4 4 3
Nucleolus 17 12 19 3 25 50 69 54 65 34 68 3 3 2 0 1 1 0 1 1 1
Peroxisomes 11 2 25 14 4 2 9 10 8 8 11 4 4 0 0 22 12 50 22 36 23
SpindlePole 2 2 8 1 1 5 10 12 10 7 7 2 2 1 2 1 0 1 2 0 1
Vac/Vac Membrane 52 31 14 9 33 14 23 13 11 19 9 30 30 24 7 2 15 1 2 6 11
Unique Cell Count 321 389 414 225 318 429 559 554 550 464 541 128 132 95 26 343 398 417 190 282 241
Labelled Cell Count 423 464 506 269 387 550 695 670 696 586 702 186 192 124 28 343 398 417 190 282 241


Mitochondria

(Huh et al. Nature 2003 425:686)
Screen WT1 WT2 WT3 RAP60 RAP140 RAP220 RAP300 RAP380 RAP460 RAP540 RAP620 RAP700 HU80 HU120 HU160 rpd3Δ_1 rpd3Δ_2 rpd3Δ_3 AF100 AF140 AF180
Mean Cell GFP Intensity (1e-4) 8.9 8.0 7.2 7.1 7.3 6.1 6.1 6.5 5.8 6.0 6.2 8.7 8.7 8.9 7.1 9.1 10.1 10.6
Std Deviation (1e-4) 1.5 1.5 1.6 1.6 1.4 1.6 1.8 1.8 1.6 1.8 1.8 1.4 1.4 1.5 1.9 2.8 2.7 2.6
Intensity Change (Log2) -0.04 0.01 -0.24 -0.26 -0.16 -0.31 -0.28 -0.22 0.27 0.27 0.31 -0.03 0.33 0.48 0.56


Localization RAP60 RAP140 RAP220 RAP300 RAP380 RAP460 RAP540 RAP620 RAP700 HU80 HU120 HU160 rpd3Δ_1 rpd3Δ_2 rpd3Δ_3
Cortical Patches 0 0 0 0 0 0 0 0 0 0 0 0
Bud 0 0 0.4 0.3 1.2 1.1 0.7 0.8 0 0 0 0
Bud Neck 0 0 0 0 0 0 0 0 0 0 0 0
Bud Site 0 0 0 0 0 3.0 0 0 0 0 0 0
Cell Periphery 0 0 0 0 0 0 0 0 0 0 0 0
Cytoplasm 0 -0.3 -1.1 -1.7 -0.4 0 -1.9 -1.9 0 0 0 0
Endoplasmic Reticulum 0 0 0 0 0 0 0 0 0 0 0 0
Endosome 0 1.3 0.2 -0.8 -0.8 0 0 0 0 0 0 0
Golgi 0 0 0 0 0 0 0 0 11.8 11.9 15.3 0
Mitochondria 0.8 -3.1 0.8 -0.9 -0.4 1.3 1.4 0.5 -9.6 -10.0 -13.1 -13.6
Nucleus 0 0 0 0 0 0 0 0 0 0 0 0
Nuclear Periphery -0.5 1.2 2.5 1.3 -0.4 1.7 2.3 3.7 -1.0 -1.5 0 0
Nucleolus -2.2 1.8 3.7 4.2 3.0 3.9 1.7 4.2 -1.1 -1.2 0 0
Peroxisomes 0.1 -3.3 -4.6 -3.7 -3.5 -3.9 -3.4 -3.2 -1.3 -1.3 0 0
SpindlePole 0 0 -0.9 -0.2 0.3 -0.1 -0.5 -0.8 0 0 0 0
Vacuole 0.4 3.8 -0.1 0.6 -1.0 -1.3 0.6 -1.7 7.3 7.1 7.3 0

Images

Circle plot not available

Protein Concentration and Protein Localization Data

R1 R2 R3
G1 Pre-START G1 Post-START S/G2 Metaphase Anaphase Telophase G1 Pre-START G1 Post-START S/G2 Metaphase Anaphase Telophase G1 Pre-START G1 Post-START S/G2 Metaphase Anaphase Telophase
Concentration
Actin 0.0378 0.019 0.0303 0.0158 0.0027 0.007 0.0684 0.0328 0.0405 0.0006 0.0015 0.0055
Bud 0.0006 0.0025 0.0015 0.001 0.0006 0.0002 0.0008 0.0008 0.0004 0.0002 0.0012 0.0001
Bud Neck 0.0009 0.0016 0.004 0.0026 0.0006 0.0003 0.0006 0.0004 0.0002 0.0001 0.0002 0.0001
Bud Periphery 0.001 0.0043 0.0019 0.0023 0.0004 0.0004 0.0012 0.0011 0.0006 0.0008 0.0017 0.0001
Bud Site 0.0053 0.0162 0.0046 0.0028 0.0107 0.0003 0.0021 0.0039 0.0007 0.0001 0.0043 0.0001
Cell Periphery 0.0005 0.0013 0.0011 0.0017 0.0001 0.0001 0.0003 0.0008 0.0002 0.0001 0.0003 0.0001
Cytoplasm 0.0101 0.0011 0.0012 0.0047 0.002 0.0002 0.006 0.002 0.0023 0.0001 0.0006 0
Cytoplasmic Foci 0.0149 0.0131 0.0106 0.0073 0.0165 0.0034 0.0211 0.0122 0.0047 0.0047 0.0068 0.0038
Eisosomes 0.0008 0.0007 0.0025 0.0003 0.0001 0.0002 0.0065 0.0005 0.0009 0.0001 0.0001 0.0002
Endoplasmic Reticulum 0.005 0.0005 0.0012 0.0056 0.0003 0.0004 0.0047 0.003 0.0013 0.0001 0.0002 0
Endosome 0.0236 0.0329 0.0273 0.0272 0.0701 0.0126 0.086 0.0385 0.0249 0.0279 0.0214 0.0038
Golgi 0.0247 0.0455 0.023 0.0308 0.0201 0.0216 0.038 0.0664 0.0233 0.0759 0.0136 0.0198
Lipid Particles 0.0338 0.0127 0.01 0.009 0.0048 0.0066 0.0258 0.0107 0.0093 0.0021 0.0059 0.0016
Mitochondria 0.7795 0.7937 0.846 0.8279 0.8388 0.9292 0.6082 0.7755 0.8487 0.8786 0.921 0.9363
None 0.0043 0.0002 0.0003 0.0022 0.0001 0.0001 0.0078 0.0002 0.0011 0.0001 0.0003 0
Nuclear Periphery 0.0165 0.0004 0.0016 0.0118 0.0002 0.0008 0.0551 0.0019 0.0134 0.0001 0.0005 0
Nucleolus 0.0013 0.0022 0.0003 0.0088 0.0002 0.0001 0.0015 0.0004 0.0002 0.0001 0.0014 0
Nucleus 0.0056 0.0008 0.0005 0.0084 0.0002 0.0001 0.007 0.0003 0.0035 0.0001 0.0015 0
Peroxisomes 0.0107 0.014 0.0154 0.0046 0.0166 0.0076 0.0138 0.0368 0.0062 0.0012 0.005 0.0273
Punctate Nuclear 0.009 0.0004 0.0004 0.0026 0.0005 0.0002 0.0309 0.0001 0.0012 0 0.0005 0
Vacuole 0.0047 0.0226 0.0084 0.0174 0.0075 0.0032 0.0059 0.0056 0.0035 0.0031 0.0093 0.0002
Vacuole Periphery 0.0092 0.0141 0.0079 0.0051 0.0068 0.0053 0.0084 0.0064 0.0132 0.004 0.0029 0.0008

Sequencing Data

R1 R2
G1 Post-START S/G2 Metaphase Anaphase Telophase G1 Post-START S/G2 Metaphase Anaphase Telophase
Gene Expression 27.7989 16.9918 19.8587 29.6924 32.0378 34.6701 33.2871 37.106 36.7709 34.864
Translational Efficiency 0.4725 0.6016 0.6348 0.419 0.3477 0.4888 0.3939 0.3579 0.4154 0.3816

Hit Data

Dataset Hit
Protein Concentration
Protein Localization
Gene Expression
Translational Efficiency
Standard name
Human Ortholog
Description Mitochondrial inner membrane half-type ABC transporter; required for respiratory growth at high temperature; localizes to vacuole membrane in response to H2O2; similar to human TAP1 and TAP2 implicated in bare lymphocyte syndrome and Wegener-like granulomatosis
Localization
Cell Percentages mitochondrion (96%)
Cell Cycle Regulation No
Subcompartmental Group mito-2

Mdl2

Mdl2


Nearest neighbours ( genes)

correlation threshold

0.6

1.0

0.80


Biological Process (Gene Ontology)

Molecular Function (Gene Ontology)

Cellular Component (Gene Ontology)


Endocytosis
Temp Actin Patch (Sac6-tdTomato) Cortical Patch (Sla1-GFP) Late Endosome (Snf7-GFP) Vacuole (Vph1-GFP)
37℃
RT
Cell Cycle Omics

CYCLoPs (Mdl2-GFP)
Gene / Allele Actin Patch (Sac6-tdTomato) Cortical Patch (Sla1-GFP) Late Endosome (Snf7-GFP) Vacuole (Sac6-tdTomato)
Gene Images
Gene Images
Images are not yet available
Images are not yet available