Standard name | |
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Human Ortholog | |
Description | High-mobility group (HMG) protein; binds to and remodels nucleosomes; involved in recruiting FACT and other chromatin remodelling complexes to chromosomes; functionally redundant with Nhp6Bp; required for transcriptional initiation fidelity of some tRNA genes; homologous to mammalian HMGB1 and HMGB2; NHP6A has a paralog, NHP6B, that arose from the whole genome duplication; protein abundance increases in response to DNA replication stress |
ensLOC | DeepLoc | |||||||||||||||||||||||
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Localization | WT1 | WT2 | WT3 | RAP60 | RAP140 | RAP220 | RAP300 | RAP380 | RAP460 | RAP540 | RAP620 | RAP700 | HU80 | HU120 | HU160 | rpd3Δ_1 | rpd3Δ_2 | rpd3Δ_3 | WT1 | WT2 | WT3 | AF100 | AF140 | AF180 |
Cortical Patches | 0 | 1 | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 2 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Bud | 0 | 1 | 0 | 0 | 1 | 0 | – | 0 | 0 | 1 | 0 | 1 | 0 | 2 | 1 | 0 | 0 | 0 | 8 | 0 | 0 | 1 | 3 | 6 |
Bud Neck | 0 | 0 | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Bud Site | 0 | 0 | 1 | 1 | 0 | 1 | – | 3 | 1 | 5 | 3 | 12 | 0 | 1 | 0 | 0 | 0 | 0 | – | – | – | – | – | – |
Cell Periphery | 1 | 0 | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Cytoplasm | 82 | 5 | 11 | 5 | 11 | 12 | – | 4 | 10 | 10 | 7 | 11 | 24 | 49 | 63 | 5 | 15 | 9 | 1 | 0 | 0 | 0 | 0 | 0 |
Endoplasmic Reticulum | 0 | 0 | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 1 | 2 | 1 | 1 | 0 | 0 | 0 | 0 |
Endosome | 1 | 0 | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 1 | 5 | 5 | 0 | 1 | 0 | 1 | 2 | 0 | 2 | 0 | 4 |
Golgi | 0 | 0 | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 2 | 2 |
Mitochondria | 9 | 4 | 10 | 12 | 17 | 44 | – | 64 | 41 | 58 | 62 | 50 | 0 | 4 | 2 | 9 | 18 | 17 | 1 | 0 | 0 | 1 | 6 | 9 |
Nucleus | 539 | 293 | 261 | 255 | 230 | 249 | – | 242 | 219 | 262 | 224 | 192 | 320 | 368 | 317 | 142 | 128 | 102 | 573 | 291 | 254 | 178 | 119 | 133 |
Nuclear Periphery | 0 | 0 | 1 | 0 | 0 | 0 | – | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 8 |
Nucleolus | 50 | 35 | 57 | 69 | 120 | 191 | – | 268 | 187 | 293 | 243 | 198 | 47 | 134 | 121 | 43 | 45 | 42 | 26 | 24 | 35 | 68 | 92 | 131 |
Peroxisomes | 1 | 0 | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 1 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
SpindlePole | 1 | 0 | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 4 | 7 | 0 | 0 | 0 | 3 | 0 | 2 | 0 | 4 | 2 |
Vac/Vac Membrane | 5 | 2 | 3 | 0 | 5 | 0 | – | 3 | 3 | 2 | 1 | 2 | 7 | 8 | 13 | 6 | 2 | 0 | 15 | 9 | 9 | 67 | 93 | 147 |
Unique Cell Count | 625 | 316 | 295 | 294 | 322 | 373 | 423 | 330 | 450 | 374 | 332 | 376 | 492 | 471 | 179 | 175 | 144 | 641 | 336 | 306 | 329 | 324 | 448 | |
Labelled Cell Count | 689 | 341 | 344 | 342 | 384 | 497 | 584 | 461 | 631 | 541 | 467 | 401 | 578 | 531 | 206 | 211 | 172 | 641 | 336 | 306 | 329 | 324 | 448 |
Screen | WT1 | WT2 | WT3 | RAP60 | RAP140 | RAP220 | RAP300 | RAP380 | RAP460 | RAP540 | RAP620 | RAP700 | HU80 | HU120 | HU160 | rpd3Δ_1 | rpd3Δ_2 | rpd3Δ_3 | AF100 | AF140 | AF180 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Mean Cell GFP Intensity (1e-4) | 40.4 | 43.5 | 21.7 | 30.9 | 30.7 | 29.1 | – | 26.2 | 27.1 | 25.6 | 25.3 | 25.2 | 39.2 | 38.8 | 37.3 | 55.0 | 53.3 | 48.9 | 37.6 | 40.8 | 38.3 |
Std Deviation (1e-4) | 18.4 | 13.2 | 7.9 | 12.3 | 11.2 | 12.4 | – | 9.5 | 12.4 | 11.1 | 10.5 | 13.4 | 14.0 | 15.7 | 15.5 | 21.5 | 23.0 | 23.6 | 12.7 | 13.8 | 11.9 |
Intensity Change (Log2) | – | – | – | 0.51 | 0.5 | 0.42 | – | 0.27 | 0.32 | 0.23 | 0.22 | 0.21 | 0.85 | 0.84 | 0.78 | 1.34 | 1.29 | 1.17 | 0.79 | 0.91 | 0.82 |
Localization | RAP60 | RAP140 | RAP220 | RAP300 | RAP380 | RAP460 | RAP540 | RAP620 | RAP700 | HU80 | HU120 | HU160 | rpd3Δ_1 | rpd3Δ_2 | rpd3Δ_3 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Cortical Patches | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Bud | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Bud Neck | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Bud Site | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 2.9 | 0 | 0 | 0 | 0 | 0 | 0 |
Cell Periphery | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Cytoplasm | -1.5 | -0.2 | -0.4 | – | -2.6 | -0.5 | -1.2 | -1.5 | -0.3 | 1.5 | 3.2 | 4.4 | -0.5 | 2.2 | 1.2 |
Endoplasmic Reticulum | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Endosome | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Golgi | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Mitochondria | 0.4 | 1.1 | 4.0 | – | 5.1 | 4.1 | 4.4 | 5.5 | 5.0 | 0 | -2.6 | 0 | 0.9 | 3.1 | 3.4 |
Nucleus | -0.6 | -5.2 | -6.6 | – | -9.0 | -6.5 | -8.8 | -8.2 | -8.6 | -1.3 | -4.6 | -6.6 | -2.7 | -4.3 | -4.6 |
Nuclear Periphery | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Nucleolus | 1.2 | 4.9 | 8.5 | – | 11.7 | 9.6 | 12.2 | 11.8 | 10.3 | -2.4 | 2.5 | 2.0 | 1.2 | 1.6 | 2.3 |
Peroxisomes | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
SpindlePole | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Vacuole | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1.6 | 0 | 0 | 0 |
R1 | R2 | R3 | ||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
G1 Pre-START | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | G1 Pre-START | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | G1 Pre-START | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | |
Concentration | 47.4194 | 37.7149 | 38.2691 | 38.0886 | 36.8427 | 36.2152 | 37.5153 | 34.1859 | 32.314 | 31.7571 | 29.6904 | 31.7681 | 48.8346 | 42.5478 | 40.3615 | 42.634 | 39.7615 | 40.123 |
Actin | 0.0002 | 0 | 0 | 0 | 0 | 0 | 0.0239 | 0 | 0.0081 | 0 | 0.0003 | 0.0007 | 0.0031 | 0 | 0.0032 | 0 | 0.0001 | 0.0053 |
Bud | 0 | 0 | 0 | 0 | 0 | 0 | 0.0005 | 0 | 0.0002 | 0 | 0.0001 | 0 | 0.0001 | 0 | 0.0001 | 0 | 0.0001 | 0.0001 |
Bud Neck | 0 | 0 | 0 | 0 | 0.0001 | 0.0001 | 0.0004 | 0 | 0.0002 | 0 | 0.0002 | 0.0002 | 0 | 0 | 0.0001 | 0 | 0.0001 | 0.0001 |
Bud Periphery | 0 | 0 | 0 | 0.0001 | 0.0001 | 0.0001 | 0.0003 | 0 | 0.0001 | 0 | 0.0001 | 0.0001 | 0.0001 | 0 | 0.0001 | 0 | 0.0001 | 0.0001 |
Bud Site | 0 | 0 | 0 | 0 | 0 | 0 | 0.0007 | 0 | 0.007 | 0 | 0.0002 | 0 | 0.0001 | 0 | 0.0003 | 0 | 0.0001 | 0 |
Cell Periphery | 0.0001 | 0 | 0 | 0.0001 | 0.0002 | 0.0002 | 0.0004 | 0 | 0.0002 | 0.0001 | 0.0005 | 0.0001 | 0.0003 | 0 | 0.0002 | 0 | 0.0004 | 0.0002 |
Cytoplasm | 0.0006 | 0 | 0 | 0 | 0 | 0 | 0.0028 | 0 | 0.0007 | 0 | 0.0009 | 0.0001 | 0.0002 | 0 | 0.0016 | 0 | 0.001 | 0 |
Cytoplasmic Foci | 0.0003 | 0 | 0 | 0 | 0.0001 | 0 | 0.004 | 0 | 0.0057 | 0 | 0.0255 | 0.0005 | 0.0035 | 0 | 0.002 | 0 | 0.0178 | 0.0001 |
Eisosomes | 0 | 0 | 0 | 0 | 0 | 0 | 0.0002 | 0 | 0.0001 | 0 | 0.0009 | 0 | 0.0002 | 0 | 0 | 0 | 0.0004 | 0.0001 |
Endoplasmic Reticulum | 0.0002 | 0 | 0 | 0 | 0 | 0 | 0.0051 | 0 | 0.0001 | 0 | 0.0001 | 0.0001 | 0.0003 | 0 | 0.0011 | 0 | 0.0001 | 0.0003 |
Endosome | 0.002 | 0 | 0 | 0 | 0 | 0 | 0.0113 | 0 | 0.0009 | 0 | 0.0001 | 0.0021 | 0.0013 | 0 | 0.0049 | 0 | 0.0001 | 0.0008 |
Golgi | 0.0001 | 0 | 0 | 0 | 0 | 0 | 0.0026 | 0 | 0.0016 | 0 | 0.0001 | 0.0004 | 0.0007 | 0 | 0.0013 | 0 | 0.0001 | 0.0005 |
Lipid Particles | 0.0003 | 0 | 0 | 0 | 0 | 0 | 0.0038 | 0 | 0.0022 | 0 | 0.0101 | 0.001 | 0.0022 | 0 | 0.0011 | 0 | 0.0092 | 0.0002 |
Mitochondria | 0.001 | 0.0003 | 0.0004 | 0.0007 | 0.0019 | 0.0003 | 0.0022 | 0.0003 | 0.0066 | 0.0014 | 0.0165 | 0.001 | 0.0033 | 0.0004 | 0.0032 | 0.0003 | 0.0098 | 0.0004 |
None | 0.0007 | 0 | 0 | 0 | 0.0001 | 0 | 0.004 | 0 | 0.0006 | 0 | 0.0049 | 0.0003 | 0.0009 | 0 | 0.0008 | 0 | 0.0048 | 0.0002 |
Nuclear Periphery | 0.0077 | 0.0003 | 0.0005 | 0.0005 | 0.0001 | 0.0001 | 0.011 | 0.0006 | 0.0007 | 0.0002 | 0.0007 | 0.0009 | 0.003 | 0.001 | 0.0014 | 0.0003 | 0.0009 | 0.0008 |
Nucleolus | 0.046 | 0.0264 | 0.0378 | 0.0581 | 0.4625 | 0.1739 | 0.0542 | 0.0208 | 0.0353 | 0.1135 | 0.2813 | 0.1822 | 0.0867 | 0.0363 | 0.0384 | 0.0334 | 0.4182 | 0.1581 |
Nucleus | 0.9318 | 0.9728 | 0.9598 | 0.9396 | 0.5341 | 0.8245 | 0.8636 | 0.978 | 0.9269 | 0.8837 | 0.6509 | 0.8085 | 0.8915 | 0.9618 | 0.9373 | 0.9659 | 0.5317 | 0.8319 |
Peroxisomes | 0.0001 | 0 | 0 | 0 | 0 | 0 | 0.0037 | 0 | 0.0013 | 0 | 0.0021 | 0.0008 | 0.0004 | 0 | 0.0004 | 0 | 0.0004 | 0.0001 |
Punctate Nuclear | 0.0024 | 0 | 0.0013 | 0 | 0.0001 | 0 | 0.0032 | 0 | 0.0005 | 0 | 0.0005 | 0.0006 | 0.0005 | 0.0001 | 0.0011 | 0 | 0.0014 | 0.0001 |
Vacuole | 0.0007 | 0 | 0 | 0.0002 | 0.0003 | 0.0004 | 0.0011 | 0 | 0.0004 | 0.0003 | 0.0013 | 0.0002 | 0.0005 | 0 | 0.0006 | 0 | 0.0008 | 0.0003 |
Vacuole Periphery | 0.0058 | 0.0001 | 0.0001 | 0.0007 | 0.0006 | 0.0003 | 0.0011 | 0.0001 | 0.0005 | 0.0006 | 0.0026 | 0.0002 | 0.0012 | 0.0002 | 0.0007 | 0.0001 | 0.0025 | 0.0003 |
R1 | R2 | |||||||||
---|---|---|---|---|---|---|---|---|---|---|
G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | |
Gene Expression | 324.7609 | 388.2545 | 316.6522 | 256.6161 | 268.8739 | 269.8325 | 367.8074 | 335.3697 | 290.3135 | 258.5726 |
Translational Efficiency | 1.779 | 2.0152 | 1.9155 | 2.785 | 2.3723 | 2.3099 | 1.8646 | 2.5305 | 2.1241 | 2.1577 |
Dataset | Hit |
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Protein Concentration | ✘ |
Protein Localization | ✘ |
Gene Expression | ✔ |
Translational Efficiency | ✘ |
Temp | Actin Patch (Sac6-tdTomato) | Cortical Patch (Sla1-GFP) | Late Endosome (Snf7-GFP) | Vacuole (Vph1-GFP) |
---|---|---|---|---|
37℃ | ||||
RT |
Gene / Allele | Actin Patch (Sac6-tdTomato) | Cortical Patch (Sla1-GFP) | Late Endosome (Snf7-GFP) | Vacuole (Sac6-tdTomato) |
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Gene | Images |
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Gene | Images |
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