Standard name | |
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Human Ortholog | |
Description | Translation initiation factor eIF-4B; contains an RNA recognition motif and binds to single-stranded RNA; has RNA annealing activity; interacts with Rps20p at the head of the 40S ribosomal subunit and alters the structure of the mRNA entry channel |
ensLOC | DeepLoc | |||||||||||||||||||||||
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Localization | WT1 | WT2 | WT3 | RAP60 | RAP140 | RAP220 | RAP300 | RAP380 | RAP460 | RAP540 | RAP620 | RAP700 | HU80 | HU120 | HU160 | rpd3Δ_1 | rpd3Δ_2 | rpd3Δ_3 | WT1 | WT2 | WT3 | AF100 | AF140 | AF180 |
Cortical Patches | 0 | 0 | 0 | 0 | 6 | 24 | 20 | 29 | 41 | 70 | 93 | 91 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 |
Bud | 1 | 0 | 0 | 2 | 0 | 2 | 4 | 4 | 2 | 6 | 1 | 3 | 1 | 2 | 1 | 0 | 0 | 0 | 0 | 5 | 1 | 8 | 9 | 12 |
Bud Neck | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Bud Site | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | – | – | – | – | – | – |
Cell Periphery | 2 | 9 | 11 | 20 | 6 | 18 | 44 | 43 | 47 | 72 | 67 | 72 | 4 | 12 | 20 | 14 | 10 | 6 | 0 | 1 | 4 | 0 | 0 | 2 |
Cytoplasm | 152 | 545 | 500 | 382 | 300 | 485 | 436 | 375 | 358 | 375 | 321 | 299 | 388 | 318 | 448 | 515 | 446 | 291 | 153 | 530 | 513 | 378 | 565 | 468 |
Endoplasmic Reticulum | 0 | 6 | 36 | 18 | 36 | 82 | 174 | 192 | 199 | 301 | 210 | 222 | 7 | 7 | 8 | 30 | 28 | 13 | 1 | 3 | 38 | 2 | 4 | 11 |
Endosome | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 2 |
Golgi | 0 | 0 | 1 | 6 | 2 | 6 | 4 | 38 | 36 | 48 | 56 | 92 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Mitochondria | 1 | 1 | 0 | 0 | 2 | 29 | 31 | 25 | 34 | 81 | 77 | 91 | 0 | 0 | 0 | 1 | 0 | 1 | 0 | 1 | 2 | 0 | 0 | 2 |
Nucleus | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 2 | 0 | 0 | 0 | 0 | 1 | 1 | 0 | 1 | 1 | 0 | 0 | 1 | 0 | 1 | 0 | 1 |
Nuclear Periphery | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 2 | 0 | 0 | 3 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Nucleolus | 0 | 0 | 0 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Peroxisomes | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
SpindlePole | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Vac/Vac Membrane | 0 | 1 | 0 | 4 | 4 | 1 | 1 | 12 | 5 | 6 | 3 | 10 | 1 | 0 | 1 | 3 | 3 | 4 | 0 | 2 | 4 | 6 | 2 | 6 |
Unique Cell Count | 153 | 553 | 534 | 413 | 349 | 603 | 668 | 653 | 644 | 804 | 670 | 697 | 393 | 327 | 456 | 527 | 452 | 295 | 159 | 553 | 570 | 400 | 587 | 515 |
Labelled Cell Count | 156 | 563 | 548 | 433 | 357 | 648 | 714 | 720 | 724 | 959 | 828 | 884 | 402 | 341 | 478 | 565 | 488 | 315 | 159 | 553 | 570 | 400 | 587 | 515 |
Screen | WT1 | WT2 | WT3 | RAP60 | RAP140 | RAP220 | RAP300 | RAP380 | RAP460 | RAP540 | RAP620 | RAP700 | HU80 | HU120 | HU160 | rpd3Δ_1 | rpd3Δ_2 | rpd3Δ_3 | AF100 | AF140 | AF180 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Mean Cell GFP Intensity (1e-4) | 47.1 | 71.0 | 56.1 | 47.3 | 38.2 | 35.6 | 33.5 | 33.1 | 32.9 | 32.2 | 31.4 | 30.3 | 67.0 | 59.8 | 56.7 | 80.4 | 73.8 | 78.0 | 63.9 | 67.7 | 69.0 |
Std Deviation (1e-4) | 11.2 | 13.6 | 9.8 | 9.1 | 8.0 | 6.6 | 6.4 | 7.2 | 5.9 | 6.0 | 5.5 | 6.0 | 15.0 | 14.0 | 12.3 | 29.2 | 23.0 | 25.8 | 19.0 | 16.1 | 19.8 |
Intensity Change (Log2) | – | – | – | -0.24 | -0.55 | -0.66 | -0.74 | -0.76 | -0.77 | -0.8 | -0.84 | -0.89 | 0.26 | 0.09 | 0.02 | 0.52 | 0.4 | 0.48 | 0.19 | 0.27 | 0.3 |
Localization | RAP60 | RAP140 | RAP220 | RAP300 | RAP380 | RAP460 | RAP540 | RAP620 | RAP700 | HU80 | HU120 | HU160 | rpd3Δ_1 | rpd3Δ_2 | rpd3Δ_3 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Cortical Patches | 0 | 0 | 4.7 | 4.0 | 4.9 | 5.9 | 7.0 | 9.0 | 8.7 | 0 | 0 | 0 | 0 | 0 | 0 |
Bud | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Bud Neck | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Bud Site | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Cell Periphery | 2.4 | -0.4 | 1.0 | 3.7 | 3.7 | 4.1 | 5.1 | 5.6 | 5.7 | -1.2 | 1.4 | 2.1 | 0.6 | 0.2 | 0 |
Cytoplasm | -0.7 | -3.8 | -6.5 | -11.8 | -14.1 | -14.6 | -17.7 | -16.9 | -18.5 | 3.8 | 2.4 | 3.6 | 3.3 | 4.0 | 3.3 |
Endoplasmic Reticulum | -1.6 | 1.9 | 3.8 | 8.8 | 9.9 | 10.3 | 12.7 | 10.5 | 10.7 | -3.5 | -3.0 | -3.8 | -0.7 | -0.3 | -1.4 |
Endosome | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Golgi | 0 | 0 | 0 | 0 | 5.4 | 5.3 | 5.5 | 6.6 | 8.6 | 0 | 0 | 0 | 0 | 0 | 0 |
Mitochondria | 0 | 0 | 5.1 | 5.0 | 4.6 | 5.4 | 7.6 | 8.1 | 8.7 | 0 | 0 | 0 | 0 | 0 | 0 |
Nucleus | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Nuclear Periphery | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Nucleolus | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Peroxisomes | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
SpindlePole | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Vacuole | 0 | 0 | 0 | 0 | 3.1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
R1 | R2 | R3 | ||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
G1 Pre-START | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | G1 Pre-START | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | G1 Pre-START | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | |
Concentration | 42.6076 | 65.1223 | 59.8975 | 51.3738 | 51.5682 | 58.0934 | 65.9452 | 78.3424 | 75.7042 | 72.4578 | 61.1164 | 73.792 | 72.7364 | 80.817 | 78.1951 | 75.9165 | 69.9715 | 75.2632 |
Actin | 0.0068 | 0.0002 | 0.0167 | 0.0244 | 0.008 | 0.0041 | 0.0053 | 0.0001 | 0.0002 | 0 | 0.0012 | 0.0005 | 0.0002 | 0.0002 | 0.0001 | 0.0001 | 0.0002 | 0.0002 |
Bud | 0.001 | 0.0003 | 0.0009 | 0.0011 | 0.001 | 0.0006 | 0.0005 | 0.0002 | 0.0005 | 0.0003 | 0.0017 | 0.0003 | 0.0003 | 0.0003 | 0.0003 | 0.0003 | 0.0002 | 0.0002 |
Bud Neck | 0.0058 | 0.0003 | 0.0006 | 0.0008 | 0.0006 | 0.0016 | 0.002 | 0.0004 | 0.0007 | 0.0006 | 0.0005 | 0.0012 | 0.0005 | 0.0005 | 0.0006 | 0.001 | 0.0007 | 0.0017 |
Bud Periphery | 0.0009 | 0.0001 | 0.0007 | 0.0008 | 0.0007 | 0.0004 | 0.0014 | 0.0002 | 0.0004 | 0.0002 | 0.0008 | 0.0005 | 0.0004 | 0.0002 | 0.0003 | 0.0002 | 0.0001 | 0.0003 |
Bud Site | 0.0021 | 0.0003 | 0.0019 | 0.0006 | 0.0023 | 0.0002 | 0.001 | 0.0002 | 0.0002 | 0.0001 | 0.0007 | 0.0001 | 0.0002 | 0.0003 | 0.0001 | 0 | 0.0001 | 0 |
Cell Periphery | 0.0026 | 0.0021 | 0.0008 | 0.0014 | 0.0008 | 0.0009 | 0.0169 | 0.012 | 0.0104 | 0.0198 | 0.0004 | 0.0044 | 0.0179 | 0.0105 | 0.0167 | 0.0038 | 0.0011 | 0.0065 |
Cytoplasm | 0.7011 | 0.9587 | 0.8882 | 0.7553 | 0.8353 | 0.8716 | 0.7789 | 0.9329 | 0.8786 | 0.7833 | 0.8417 | 0.8391 | 0.7822 | 0.918 | 0.8845 | 0.7964 | 0.888 | 0.8878 |
Cytoplasmic Foci | 0.0108 | 0.0008 | 0.0068 | 0.0268 | 0.011 | 0.0061 | 0.0011 | 0.0007 | 0.0037 | 0.0014 | 0.007 | 0.0025 | 0.0008 | 0.0008 | 0.001 | 0.0015 | 0.0022 | 0.0022 |
Eisosomes | 0.0002 | 0 | 0.0001 | 0.0002 | 0.0004 | 0.0002 | 0.0001 | 0 | 0 | 0 | 0.0001 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Endoplasmic Reticulum | 0.0592 | 0.0033 | 0.0041 | 0.0047 | 0.0042 | 0.0414 | 0.0769 | 0.0184 | 0.02 | 0.0052 | 0.0055 | 0.1138 | 0.094 | 0.0207 | 0.0275 | 0.0573 | 0.0266 | 0.063 |
Endosome | 0.018 | 0.001 | 0.006 | 0.0105 | 0.0174 | 0.0165 | 0.0047 | 0.001 | 0.0027 | 0.0059 | 0.0072 | 0.0063 | 0.0031 | 0.0016 | 0.0023 | 0.0078 | 0.0088 | 0.0077 |
Golgi | 0.0026 | 0.0001 | 0.0013 | 0.0015 | 0.0019 | 0.003 | 0.0005 | 0.0001 | 0.0002 | 0.0001 | 0.0031 | 0.0006 | 0.0003 | 0.0004 | 0.0002 | 0.0004 | 0.0003 | 0.001 |
Lipid Particles | 0.0049 | 0.0002 | 0.0013 | 0.0108 | 0.0027 | 0.002 | 0.0012 | 0.0015 | 0.0043 | 0.0029 | 0.0014 | 0.001 | 0.001 | 0.0019 | 0.0017 | 0.0012 | 0.0006 | 0.0007 |
Mitochondria | 0.0047 | 0.0002 | 0.0013 | 0.015 | 0.0129 | 0.0039 | 0.0012 | 0.0001 | 0.0002 | 0.0001 | 0.0749 | 0.0007 | 0.0003 | 0.0003 | 0.0001 | 0.0001 | 0.0001 | 0.0005 |
None | 0.0116 | 0.0003 | 0.0035 | 0.0052 | 0.0066 | 0.0043 | 0.0007 | 0.0001 | 0.0005 | 0.0001 | 0.0047 | 0.0003 | 0.0003 | 0.0001 | 0.0001 | 0.0001 | 0.0003 | 0.0002 |
Nuclear Periphery | 0.021 | 0.0014 | 0.0043 | 0.0059 | 0.0101 | 0.0064 | 0.0084 | 0.0014 | 0.0026 | 0.0042 | 0.0026 | 0.006 | 0.0075 | 0.0021 | 0.0031 | 0.0049 | 0.0054 | 0.003 |
Nucleolus | 0.0067 | 0.0016 | 0.0003 | 0.0039 | 0.0176 | 0.0027 | 0.0014 | 0.0001 | 0.0004 | 0.0002 | 0.004 | 0.0001 | 0.0001 | 0 | 0.0001 | 0 | 0 | 0 |
Nucleus | 0.0213 | 0.0025 | 0.0023 | 0.0055 | 0.0091 | 0.0029 | 0.0046 | 0.0011 | 0.0019 | 0.0021 | 0.0099 | 0.0018 | 0.002 | 0.0013 | 0.0013 | 0.0017 | 0.0018 | 0.0014 |
Peroxisomes | 0.0084 | 0 | 0.0009 | 0.0037 | 0.0012 | 0.0002 | 0 | 0 | 0 | 0 | 0.0015 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Punctate Nuclear | 0.0053 | 0.0001 | 0.0009 | 0.0088 | 0.0015 | 0.0004 | 0.0001 | 0 | 0.0003 | 0 | 0.001 | 0.0001 | 0 | 0 | 0 | 0 | 0.0001 | 0 |
Vacuole | 0.0864 | 0.0245 | 0.0475 | 0.0893 | 0.0438 | 0.0236 | 0.0843 | 0.0285 | 0.0686 | 0.157 | 0.0246 | 0.0182 | 0.0854 | 0.0396 | 0.0573 | 0.1089 | 0.0559 | 0.0212 |
Vacuole Periphery | 0.0183 | 0.0021 | 0.0096 | 0.0238 | 0.0109 | 0.0072 | 0.0087 | 0.0009 | 0.0033 | 0.0166 | 0.0055 | 0.0028 | 0.0034 | 0.0011 | 0.0025 | 0.0142 | 0.0075 | 0.0025 |
R1 | R2 | |||||||||
---|---|---|---|---|---|---|---|---|---|---|
G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | |
Gene Expression | 352.6518 | 407.7924 | 400.3024 | 281.3631 | 327.3712 | 370.1214 | 294.2144 | 296.7712 | 303.124 | 244.9416 |
Translational Efficiency | 2.3443 | 2.3487 | 2.0347 | 3.1537 | 2.4031 | 1.9068 | 2.0296 | 2.1467 | 1.7251 | 2.1279 |
Dataset | Hit |
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Protein Concentration | ✘ |
Protein Localization | ✘ |
Gene Expression | ✘ |
Translational Efficiency | ✘ |
Temp | Actin Patch (Sac6-tdTomato) | Cortical Patch (Sla1-GFP) | Late Endosome (Snf7-GFP) | Vacuole (Vph1-GFP) |
---|---|---|---|---|
37℃ | ||||
RT |
Gene / Allele | Actin Patch (Sac6-tdTomato) | Cortical Patch (Sla1-GFP) | Late Endosome (Snf7-GFP) | Vacuole (Sac6-tdTomato) |
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Gene | Images |
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Gene | Images |
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