Standard name | |
---|---|
Human Ortholog | |
Description | Subunit of the SWI/SNF chromatin remodeling complex; involved in transcriptional regulation; interacts with a highly conserved 40-residue sequence of Snf2p; relocates to the cytosol under hypoxic conditions |
ensLOC | DeepLoc | |||||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Localization | WT1 | WT2 | WT3 | RAP60 | RAP140 | RAP220 | RAP300 | RAP380 | RAP460 | RAP540 | RAP620 | RAP700 | HU80 | HU120 | HU160 | rpd3Δ_1 | rpd3Δ_2 | rpd3Δ_3 | WT1 | WT2 | WT3 | AF100 | AF140 | AF180 |
Cortical Patches | 0 | 0 | 0 | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Bud | 0 | 0 | 0 | 1 | 1 | 1 | 4 | – | 4 | 6 | 1 | 0 | 0 | 1 | 0 | 3 | 0 | 1 | 1 | 0 | 0 | 0 | 4 | 4 |
Bud Neck | 0 | 0 | 0 | 0 | 0 | 1 | 0 | – | 1 | 3 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 2 | 3 |
Bud Site | 0 | 0 | 0 | 1 | 0 | 8 | 1 | – | 8 | 10 | 5 | 10 | 0 | 0 | 0 | 1 | 0 | 1 | – | – | – | – | – | – |
Cell Periphery | 1 | 0 | 0 | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Cytoplasm | 3 | 1 | 3 | 12 | 20 | 16 | 24 | – | 14 | 12 | 14 | 4 | 18 | 59 | 114 | 22 | 20 | 20 | 0 | 0 | 0 | 0 | 2 | 2 |
Endoplasmic Reticulum | 0 | 0 | 0 | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 2 | 4 | 4 | 8 | 0 | 0 | 0 | 0 | 1 | 0 |
Endosome | 2 | 2 | 0 | 6 | 8 | 2 | 9 | – | 2 | 1 | 1 | 0 | 1 | 2 | 11 | 9 | 8 | 12 | 7 | 1 | 1 | 2 | 11 | 6 |
Golgi | 0 | 0 | 0 | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 1 | 1 | 1 | 0 | 1 | 1 | 1 | 0 |
Mitochondria | 27 | 23 | 4 | 21 | 16 | 156 | 31 | – | 106 | 100 | 79 | 48 | 13 | 11 | 2 | 33 | 19 | 23 | 1 | 1 | 1 | 2 | 3 | 7 |
Nucleus | 157 | 79 | 78 | 259 | 397 | 270 | 487 | – | 273 | 349 | 189 | 141 | 458 | 571 | 624 | 302 | 237 | 222 | 148 | 89 | 78 | 166 | 422 | 377 |
Nuclear Periphery | 1 | 0 | 0 | 0 | 3 | 1 | 6 | – | 3 | 4 | 3 | 0 | 0 | 2 | 2 | 1 | 1 | 3 | 2 | 0 | 0 | 0 | 1 | 3 |
Nucleolus | 12 | 3 | 0 | 3 | 12 | 8 | 20 | – | 26 | 40 | 34 | 31 | 17 | 9 | 23 | 5 | 4 | 5 | 23 | 12 | 17 | 52 | 120 | 126 |
Peroxisomes | 0 | 0 | 0 | 0 | 0 | 0 | 1 | – | 0 | 0 | 0 | 0 | 0 | 2 | 3 | 0 | 1 | 3 | 0 | 0 | 0 | 0 | 0 | 1 |
SpindlePole | 3 | 1 | 6 | 16 | 12 | 12 | 23 | – | 4 | 7 | 5 | 2 | 11 | 15 | 8 | 17 | 18 | 14 | 4 | 3 | 7 | 8 | 31 | 32 |
Vac/Vac Membrane | 3 | 6 | 0 | 2 | 9 | 2 | 6 | – | 3 | 1 | 0 | 1 | 1 | 0 | 6 | 11 | 12 | 5 | 10 | 10 | 12 | 16 | 45 | 44 |
Unique Cell Count | 179 | 100 | 85 | 290 | 447 | 347 | 559 | 348 | 428 | 263 | 172 | 495 | 647 | 771 | 352 | 282 | 278 | 205 | 121 | 125 | 256 | 651 | 618 | |
Labelled Cell Count | 209 | 115 | 91 | 321 | 478 | 477 | 612 | 444 | 533 | 331 | 237 | 520 | 673 | 795 | 409 | 326 | 318 | 205 | 121 | 125 | 256 | 651 | 618 |
Screen | WT1 | WT2 | WT3 | RAP60 | RAP140 | RAP220 | RAP300 | RAP380 | RAP460 | RAP540 | RAP620 | RAP700 | HU80 | HU120 | HU160 | rpd3Δ_1 | rpd3Δ_2 | rpd3Δ_3 | AF100 | AF140 | AF180 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Mean Cell GFP Intensity (1e-4) | 5.0 | 4.8 | 5.0 | 5.4 | 6.1 | 4.4 | 5.3 | – | 4.9 | 5.0 | 5.3 | 4.9 | 5.5 | 5.2 | 5.9 | 6.2 | 6.6 | 6.4 | 4.8 | 5.2 | 5.3 |
Std Deviation (1e-4) | 0.7 | 0.7 | 1.0 | 1.3 | 1.6 | 1.5 | 1.2 | – | 1.5 | 1.3 | 1.7 | 1.1 | 0.9 | 1.1 | 1.4 | 1.1 | 1.1 | 1.4 | 1.1 | 1.1 | 1.3 |
Intensity Change (Log2) | – | – | – | 0.11 | 0.3 | -0.19 | 0.1 | – | -0.01 | 0.01 | 0.1 | -0.04 | 0.15 | 0.07 | 0.23 | 0.31 | 0.4 | 0.35 | -0.05 | 0.05 | 0.08 |
Localization | RAP60 | RAP140 | RAP220 | RAP300 | RAP380 | RAP460 | RAP540 | RAP620 | RAP700 | HU80 | HU120 | HU160 | rpd3Δ_1 | rpd3Δ_2 | rpd3Δ_3 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Actin | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – |
Bud | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – |
Bud Neck | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – |
Bud Site | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – |
Cell Periphery | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – |
Cyto | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – |
Endoplasmic Reticulum | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – |
Endosome | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – |
Golgi | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – |
Mitochondria | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – |
Nuclear Periphery | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – |
Nuc | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – |
Nucleolus | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – |
Peroxisomes | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – |
SpindlePole | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – |
Vac | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – |
Cortical Patches | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – |
Cytoplasm | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – |
Nucleus | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – |
Vacuole | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – |