Standard name
Human Ortholog
Description Putative high affinity iron transporter; involved in transport of intravacuolar stores of iron; forms complex with Fet5p; expression is regulated by iron; proposed to play indirect role in endocytosis; protein abundance increases in response to DNA replication stress

Micrographs

ensLOC DeepLoc
Localization WT1 WT2 WT3 RAP60 RAP140 RAP220 RAP300 RAP380 RAP460 RAP540 RAP620 RAP700 HU80 HU120 HU160 rpd3Δ_1 rpd3Δ_2 rpd3Δ_3 WT1 WT2 WT3 AF100 AF140 AF180
Cortical Patches 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Bud 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Bud Neck 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Bud Site 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Cell Periphery 0 0 0 0 0 0 0 0.05 0.05 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Cytoplasm 0 0.07 0.05 0.09 0.12 0.21 0.25 0.31 0.37 0.27 0.33 0.07 0.07 0.06 0.17 0.23 0.23 0 0 0 0 0 0
Endoplasmic Reticulum 0 0 0 0 0 0 0.07 0.06 0.05 0.07 0.08 0 0.05 0 0 0.05 0 0 0 0 0 0 0
Endosome 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0.07 0 0
Golgi 0 0 0.13 0.12 0.08 0 0 0 0 0 0 0.41 0.42 0.36 0 0 0.1 0 0 0.06 0 0 0
Mitochondria 0 0.05 0 0 0 0 0 0 0.07 0.08 0.1 0 0 0 0 0 0 0 0 0 0 0 0
Nucleus 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Nuclear Periphery 0 0 0.05 0.09 0 0.06 0.13 0.07 0.1 0.05 0 0 0 0 0 0 0 0 0 0.05 0 0 0
Nucleolus 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Peroxisomes 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
SpindlePole 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Vac/Vac Membrane 0.94 0.92 0.92 0.87 0.87 0.72 0.57 0.56 0.46 0.58 0.48 0.8 0.8 0.92 0.81 0.76 0.73 0.91 0.95 0.79 0.83 0.88 0.91
ensLOC DeepLoc
Localization WT1 WT2 WT3 RAP60 RAP140 RAP220 RAP300 RAP380 RAP460 RAP540 RAP620 RAP700 HU80 HU120 HU160 rpd3Δ_1 rpd3Δ_2 rpd3Δ_3 WT1 WT2 WT3 AF100 AF140 AF180
Cortical Patches 0 0 0 0 0 0 3 1 2 2 5 9 9 1 0 0 0 0 1 1 0 2 0
Bud 0 0 0 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 1 2
Bud Neck 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Bud Site 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Cell Periphery 0 0 1 1 2 1 12 10 15 12 15 1 1 0 2 0 0 0 0 0 0 0 0
Cytoplasm 5 7 13 20 31 55 79 59 103 79 124 18 18 14 29 38 36 1 1 1 0 2 1
Endoplasmic Reticulum 0 1 3 1 2 2 23 12 13 22 29 10 13 4 4 8 5 0 0 1 1 2 2
Endosome 1 0 1 0 2 0 1 1 0 2 1 1 1 0 4 5 0 7 1 11 12 5 9
Golgi 2 0 35 27 20 8 5 4 6 2 10 105 110 91 6 1 16 3 0 14 6 4 9
Mitochondria 9 5 5 6 1 6 8 8 19 25 38 1 1 0 6 3 2 2 0 6 3 4 2
Nucleus 6 2 0 0 6 8 2 4 5 4 3 0 0 1 7 7 6 5 0 0 0 5 3
Nuclear Periphery 2 1 13 21 2 15 40 14 28 14 14 0 0 1 5 5 4 4 0 14 3 7 5
Nucleolus 3 3 6 5 3 4 3 2 1 2 2 1 1 0 4 1 3 1 0 0 0 1 1
Peroxisomes 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
SpindlePole 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Vac/Vac Membrane 234 91 248 199 220 186 176 108 128 172 183 206 207 232 137 126 116 275 100 210 147 314 407
Unique Cell Count 248 99 269 228 254 259 310 192 279 296 378 259 260 252 169 166 158 304 106 266 178 357 449
Labelled Cell Count 262 110 325 280 289 285 352 223 320 339 424 352 361 344 204 194 188 304 106 266 178 357 449


Vacuole Periphery

(Huh et al. Nature 2003 425:686)
Screen WT1 WT2 WT3 RAP60 RAP140 RAP220 RAP300 RAP380 RAP460 RAP540 RAP620 RAP700 HU80 HU120 HU160 rpd3Δ_1 rpd3Δ_2 rpd3Δ_3 AF100 AF140 AF180
Mean Cell GFP Intensity (1e-4) 17.5 16.2 23.1 21.4 20.4 16.5 13.7 13.5 12.6 12.9 13.3 28.5 28.5 33.1 14.2 13.6 16.9 19.0 21.3 23.9
Std Deviation (1e-4) 8.2 4.0 6.8 5.8 5.7 5.8 4.3 3.5 3.8 3.7 3.8 8.4 8.4 8.0 4.8 5.3 6.1 6.2 7.0 7.6
Intensity Change (Log2) -0.11 -0.18 -0.49 -0.75 -0.77 -0.88 -0.84 -0.8 0.3 0.3 0.52 -0.71 -0.76 -0.45 -0.28 -0.12 0.05


Localization RAP60 RAP140 RAP220 RAP300 RAP380 RAP460 RAP540 RAP620 RAP700 HU80 HU120 HU160 rpd3Δ_1 rpd3Δ_2 rpd3Δ_3
Cortical Patches 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Bud 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Bud Neck 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Bud Site 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Cell Periphery 0 0 0 2.8 0 3.5 2.9 2.9 0 0 0 0 0 0
Cytoplasm 1.8 3.0 5.6 6.8 7.6 9.2 7.0 8.6 1.0 1.0 0.4 4.3 5.7 5.6
Endoplasmic Reticulum 0 0 0 3.7 3.1 2.5 3.6 3.8 2.0 2.6 0 0 0 0
Endosome 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Golgi -0.4 -1.9 -4.2 -5.4 -4.2 -4.8 -5.9 -5.1 7.2 7.6 6.2 -3.3 -4.6 -0.9
Mitochondria 0.6 0 0.4 0.6 1.5 2.8 3.5 4.1 0 0 0 0 0 0
Nucleus 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Nuclear Periphery 1.9 -2.8 0.5 3.4 1.1 2.3 -0.1 -0.7 -3.6 -3.6 -3.1 -1.0 -0.9 -1.2
Nucleolus 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Peroxisomes 0 0 0 0 0 0 0 0 0 0 0 0 0 0
SpindlePole 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Vacuole -1.8 -2.1 -6.1 -9.6 -9.1 -11.7 -9.3 -11.6 -4.2 -4.2 -0.1 -3.5 -4.8 -5.3

Images

Circle plot not available

Protein Concentration and Protein Localization Data

R1 R2 R3
G1 Pre-START G1 Post-START S/G2 Metaphase Anaphase Telophase G1 Pre-START G1 Post-START S/G2 Metaphase Anaphase Telophase G1 Pre-START G1 Post-START S/G2 Metaphase Anaphase Telophase
Concentration 19.0657 27.6122 25.1703 25.1229 20.151 24.2993 15.5875 20.017 18.3359 18.8294 13.5456 18.2242 23.5087 32.6848 27.1126 26.3334 23.0855 27.0188
Actin 0.0165 0 0.0004 0 0.0545 0.0013 0.0104 0 0.0067 0 0.0044 0.0015 0.001 0 0.0061 0.0005 0.0043 0.0028
Bud 0.0005 0 0.0002 0 0.0027 0.0008 0.0002 0 0.0002 0 0.0001 0 0.0003 0 0.0002 0.0001 0.0003 0.0001
Bud Neck 0.0011 0 0.0036 0 0.0013 0.0002 0.0003 0 0.0001 0 0.0002 0.0001 0.0002 0 0.0001 0 0.0001 0.0001
Bud Periphery 0.0008 0.0001 0.0003 0.0001 0.0066 0.0005 0.0004 0.0001 0.0004 0 0.0002 0.0002 0.0009 0.0001 0.0004 0.0002 0.0006 0.0003
Bud Site 0.0073 0 0.0003 0 0.0019 0.0002 0.0004 0 0.0003 0 0.0001 0 0.0006 0 0.0002 0.0001 0.0005 0.0002
Cell Periphery 0.0013 0.0009 0.0007 0.0002 0.0004 0.0009 0.0007 0.0005 0.0007 0.0001 0.0003 0.0003 0.0012 0.0004 0.0009 0.0011 0.0004 0.0002
Cytoplasm 0.0098 0.0006 0.0018 0.0001 0.0028 0.005 0.0045 0.0003 0.0006 0 0.0016 0.0005 0.0002 0.0002 0.0006 0.0003 0.0017 0.0003
Cytoplasmic Foci 0.0116 0.0002 0.0027 0 0.0096 0.001 0.0037 0.0002 0.0042 0 0.0153 0.0006 0.0003 0.0001 0.0055 0.002 0.0061 0.0014
Eisosomes 0.0002 0 0 0 0.0003 0.0001 0.0001 0 0 0 0.0001 0 0 0 0 0 0.0001 0
Endoplasmic Reticulum 0.0037 0.0002 0.0004 0 0.0041 0.0004 0.0043 0.0005 0.0008 0.0001 0.0013 0.0003 0.0004 0.0004 0.0006 0.0008 0.0032 0.0009
Endosome 0.0252 0.0046 0.0119 0.0032 0.0341 0.0104 0.0262 0.0192 0.0281 0.0021 0.0254 0.0078 0.0122 0.0081 0.0282 0.0067 0.0349 0.0066
Golgi 0.0046 0.0001 0.0012 0 0.0142 0.005 0.0048 0.0023 0.0029 0 0.0025 0.0016 0.0044 0.0005 0.0083 0.0008 0.0077 0.0012
Lipid Particles 0.0149 0.0002 0.0017 0.0002 0.0184 0.0012 0.0068 0.0006 0.0027 0 0.0187 0.0035 0.0016 0.0005 0.0052 0.0077 0.0138 0.0021
Mitochondria 0.0172 0.0005 0.0061 0.0001 0.005 0.0031 0.0182 0.0064 0.0077 0 0.0131 0.002 0.0152 0.0006 0.0138 0.0076 0.023 0.0046
None 0.0034 0 0.0004 0 0.0028 0.0045 0.0008 0 0.0004 0 0.0044 0.001 0.0001 0 0.0004 0.0009 0.0007 0.0002
Nuclear Periphery 0.0203 0.0034 0.0065 0.0007 0.0185 0.019 0.0091 0.0083 0.0067 0.0011 0.005 0.009 0.0095 0.0122 0.0072 0.0058 0.0126 0.012
Nucleolus 0.0053 0.0017 0.0016 0.0001 0.0013 0.0018 0.0024 0.0005 0.0009 0 0.0004 0.0003 0.0016 0.0001 0.0004 0.0007 0.0004 0.0001
Nucleus 0.0064 0.0028 0.006 0.0003 0.0049 0.0074 0.0032 0.0007 0.0008 0.0001 0.001 0.0006 0.0022 0.0004 0.0007 0.0011 0.0031 0.0004
Peroxisomes 0.0042 0 0.0015 0 0.0056 0.0003 0.0013 0 0.0006 0 0.0173 0.0003 0.0001 0 0.0025 0.0004 0.0016 0.0011
Punctate Nuclear 0.0097 0 0.0029 0 0.041 0.003 0.0023 0 0.0002 0 0.0109 0.0023 0 0 0.0003 0.0007 0.0006 0.0004
Vacuole 0.2399 0.3135 0.3132 0.328 0.2457 0.2356 0.2526 0.2155 0.2692 0.2421 0.2374 0.1769 0.226 0.2467 0.2575 0.2597 0.2073 0.1628
Vacuole Periphery 0.5964 0.6711 0.6365 0.667 0.5244 0.6981 0.6473 0.7447 0.6658 0.7543 0.6405 0.7912 0.722 0.7297 0.661 0.7027 0.677 0.8021

Sequencing Data

R1 R2
G1 Post-START S/G2 Metaphase Anaphase Telophase G1 Post-START S/G2 Metaphase Anaphase Telophase
Gene Expression 31.1763 41.6282 31.4135 43.7865 33.2581 34.7088 63.6704 75.8351 70.8765 66.6772
Translational Efficiency 1.0009 0.8864 1.059 0.9308 0.6756 1.1865 0.8696 0.72 0.796 0.7505

Hit Data

Dataset Hit
Protein Concentration
Protein Localization
Gene Expression
Translational Efficiency

Micrographs

Cell Count

R1 R2 R1 & R2
WT UBP2 UBP14 UBP2UBP14 WT UBP2 UBP14 UBP2UBP14 WT UBP2 UBP14 UBP2UBP14
112 369 1956 185 276 888 2870 1114 388 1257 4826 1299

Protein Abundance

R1 R2 R1 & R2
WT UBP2 UBP14 UBP2UBP14 WT UBP2 UBP14 UBP2UBP14 WT UBP2 UBP14 UBP2UBP14
Mean 1718.86 1529.13 2041.66 2005.23 1728.37 1390.12 2038.64 1984.00 1725.62 1430.93 2039.86 1987.02
Standard Deviation 267.98 449.43 362.13 432.02 303.34 313.62 436.92 407.36 293.60 364.40 408.27 411.03
Intensity Change Log 2 -0.168741 0.248291 0.222316 -0.314203 0.238195 0.199000 -0.239840 0.243238 0.210673

Localization Score (DeepLoc)

R1 R2 R1 & R2
WT UBP2 UBP14 UBP2UBP14 WT UBP2 UBP14 UBP2UBP14 WT UBP2 UBP14 UBP2UBP14
Actin 0.000130 0.000128 0.000070 0.000093 0.000049 0.000084 0.000159 0.000190 0.000073 0.000097 0.000123 0.000176
Bud Neck 0.001171 0.000455 0.000356 0.005254 0.000087 0.000341 0.000349 0.000671 0.000400 0.000374 0.000352 0.001323
Bud Site 0.001071 0.002057 0.000539 0.002998 0.000271 0.002207 0.000867 0.001383 0.000502 0.002163 0.000734 0.001613
Cell Periphery 0.000193 0.001058 0.000594 0.001809 0.002242 0.003622 0.006770 0.001317 0.001651 0.002869 0.004267 0.001387
Cytoplasm 0.000611 0.001320 0.000067 0.001132 0.000211 0.002311 0.000054 0.000534 0.000327 0.002020 0.000059 0.000619
Cytoplasmic Foci 0.007795 0.005072 0.000233 0.000880 0.000775 0.002382 0.000465 0.000655 0.002801 0.003172 0.000371 0.000687
Eisosomes 0.000012 0.000009 0.000017 0.000012 0.000005 0.000007 0.000033 0.000010 0.000007 0.000008 0.000027 0.000010
Endoplasmic Reticulum 0.000211 0.000907 0.000217 0.001184 0.000748 0.001033 0.001926 0.000929 0.000593 0.000996 0.001233 0.000966
Endosome 0.011338 0.015549 0.000722 0.003842 0.002009 0.007593 0.003331 0.003155 0.004702 0.009929 0.002274 0.003252
Golgi 0.018317 0.039655 0.003280 0.007945 0.010684 0.010458 0.017399 0.012139 0.012888 0.019029 0.011677 0.011542
Lipid Particles 0.002693 0.000519 0.001777 0.000745 0.000606 0.001014 0.002615 0.000918 0.001209 0.000869 0.002275 0.000893
Mitochondria 0.003078 0.003705 0.002936 0.004060 0.001550 0.006565 0.004374 0.001372 0.001991 0.005725 0.003791 0.001754
Mitotic Spindle 0.009015 0.000152 0.000066 0.001735 0.000171 0.000264 0.000044 0.000369 0.002724 0.000231 0.000053 0.000563
None 0.000130 0.000334 0.000210 0.000088 0.000073 0.000263 0.000262 0.000162 0.000090 0.000284 0.000241 0.000151
Nuclear Periphery 0.001953 0.001552 0.002065 0.002337 0.000558 0.000679 0.000768 0.001886 0.000961 0.000935 0.001293 0.001950
Nuclear Periphery Foci 0.003101 0.001601 0.001053 0.002045 0.000775 0.000609 0.000624 0.001440 0.001447 0.000900 0.000798 0.001526
Nucleolus 0.000870 0.000267 0.001380 0.003065 0.000244 0.000847 0.000833 0.001311 0.000424 0.000677 0.001054 0.001561
Nucleus 0.000616 0.000218 0.000202 0.002041 0.000105 0.000639 0.000186 0.000436 0.000252 0.000515 0.000192 0.000665
Peroxisomes 0.002332 0.000345 0.000032 0.000111 0.000012 0.000371 0.000041 0.000030 0.000682 0.000363 0.000037 0.000041
Vacuole 0.404177* 0.243185* 0.279040* 0.560096* 0.236428* 0.267461* 0.384076* 0.436144* 0.284850* 0.260335* 0.341505* 0.453796*
Vacuole Periphery 0.531185* 0.681912* 0.705145* 0.398530* 0.742396* 0.691249* 0.574823* 0.534952* 0.681428* 0.688508* 0.627643* 0.515523*

Localization Changes (T-score)

R1 R2 R1 & R2
UBP2_WT UBP14_WT UBP2UBP14_WT UBP2UBP14_UBP2 UBP2UBP14_UBP14 UBP2_WT UBP14_WT UBP2UBP14_WT UBP2UBP14_UBP2 UBP2UBP14_UBP14 UBP2_WT UBP14_WT UBP2UBP14_WT UBP2UBP14_UBP2 UBP2UBP14_UBP14
Actin 0.03 0.86 0.40 0.37 -0.38 -0.89 -0.95 -0.89 -0.68 -0.16 -0.64 -0.69 -0.77 -0.59 -0.36
Bud Neck 1.95 2.36 -1.87 -2.15 -2.19 -3.68 -5.35 -5.05 -2.55 -2.72 0.23 0.48 -2.61 -2.72 -2.80
Bud Site -1.20 1.26 -2.13 -1.44 -2.46 -3.97 -5.77 -4.52 1.40 -2.23 -3.97 -1.42 -4.16 0.51 -3.43
Cell Periphery -2.78 -5.13 -1.65 -0.72 -1.23 -1.04 -3.88 0.99 2.33 7.09 -1.29 -3.34 0.39 2.04 5.76
Cytoplasm -1.07 1.78 -1.06 -0.54 -1.48 -2.24 0.88 -1.17 1.48 -1.57 -2.45 1.73 -1.39 1.30 -2.05
Cytoplasmic Foci 0.53 1.55 1.36 2.50 -2.82 -2.13 0.61 0.19 2.78 -0.97 -0.25 1.66 1.40 3.83 -2.04
Eisosomes 0.48 -0.72 0.07 -0.70 1.42 -1.03 -8.31 -2.39 -1.51 7.33 -0.27 -6.84 -1.26 -1.48 7.52
Endoplasmic Reticulum -2.93 -0.10 -1.62 -0.41 -1.62 -1.36 -5.42 -0.47 0.26 2.53 -2.45 -4.48 -1.11 0.10 0.81
Endosome -0.89 3.07 2.05 3.45 -3.32 -4.09 -1.84 -1.43 3.42 0.25 -3.09 2.14 1.16 4.94 -2.17
Golgi -2.77 3.06 1.88 4.86 -1.74 0.05 -1.70 -0.36 -0.62 2.40 -1.62 0.39 0.41 2.71 0.09
Lipid Particles 0.93 0.39 0.81 -0.54 2.16 -0.94 -10.79 -1.97 0.24 9.31 0.44 -1.56 0.45 -0.07 9.19
Mitochondria -0.33 0.09 -0.27 -0.09 -0.34 -3.51 -3.98 0.19 3.76 5.14 -3.23 -2.75 0.25 3.44 3.15
Mitotic Spindle 1.24 1.25 0.64 -1.43 -1.46 -0.57 0.87 -1.09 -0.83 -1.85 1.20 1.29 0.82 -1.70 -2.12
None -1.23 -1.85 0.63 1.45 3.75 -3.18 -10.99 -2.39 1.38 2.40 -3.03 -8.71 -1.93 1.79 2.46
Nuclear Periphery 0.38 -0.10 -0.42 -0.70 -0.43 -0.42 -0.90 -1.92 -1.78 -1.70 0.09 -1.13 -1.59 -1.59 -1.15
Nuclear Periphery Foci 1.07 1.74 0.71 -0.51 -1.47 0.32 0.31 -1.26 -2.77 -3.47 1.00 1.34 -0.18 -1.84 -3.20
Nucleolus 2.90 -1.46 -2.38 -3.03 -1.85 -1.86 -9.99 -3.07 -1.01 -1.41 -1.06 -4.66 -3.48 -2.30 -1.57
Nucleus 1.56 1.71 -1.31 -1.61 -1.62 -1.68 -1.75 -2.26 0.30 -1.88 -1.11 0.78 -2.09 -0.86 -2.42
Peroxisomes 0.93 1.08 1.03 0.99 -1.72 -1.86 -1.92 -2.57 1.76 0.68 0.50 1.05 1.04 2.13 -0.55
Vacuole 6.51 5.46 -5.25 -14.60 -14.32 -2.10 -10.89 -13.53 -16.44 -6.21 1.85 -4.60 -12.32 -21.18 -14.65
Vacuole Periphery -5.32 -6.84 4.39 12.40 15.91 3.20 11.56 13.28 13.98 4.66 -0.48 3.95 11.23 17.31 14.25
Standard name
Human Ortholog
Description Putative high affinity iron transporter; involved in transport of intravacuolar stores of iron; forms complex with Fet5p; expression is regulated by iron; proposed to play indirect role in endocytosis; protein abundance increases in response to DNA replication stress
Localization
Cell Percentages vacuolar membrane (55%)
Cell Cycle Regulation No
Subcompartmental Group vac memb-2

Fth1

Fth1


Nearest neighbours ( genes)

correlation threshold

0.6

1.0

0.80


Biological Process (Gene Ontology)

Molecular Function (Gene Ontology)

Cellular Component (Gene Ontology)


Endocytosis
Temp Actin Patch (Sac6-tdTomato) Cortical Patch (Sla1-GFP) Late Endosome (Snf7-GFP) Vacuole (Vph1-GFP)
37℃
RT
Cell Cycle Omics

CYCLoPs (Fth1-GFP)
Gene / Allele Actin Patch (Sac6-tdTomato) Cortical Patch (Sla1-GFP) Late Endosome (Snf7-GFP) Vacuole (Sac6-tdTomato)
Gene Images
Gene Images
Images are not yet available
Images are not yet available